Nucleotide Global Alignment

Description

• Query: ccsbBroad304_10876
• Subject: NM_001098479.2
• Aligned Length: 1361
• Identities: 938
• Gaps: 298

Alignment

Query    1  ATGCGGGTCATGGCGCCCCGAACCCTCATCCTGCTGCTCTCGGGAGCCCTGGCCCTGACCGAGACCTGGGCCTG  74
                     |||||||||||||.||||.|||||||||||||.||.|||||||||||||||||.||.|||||..|
Sbjct    1  ---------ATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGGCCCTGACCGATACTTGGGCGGG  65

Query   75  CTCCCACTCCATGAGGTATTTCTACACCGCCGTGTCCCGGCCCGGCCGCGGAGAGCCCCGCTTCATCGCAGTGG  148
            ||||||||||.|||||||||||..||||||.|||||.||||||||||||||.||||||||||.||||||.||||
Sbjct   66  CTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGGGAGCCCCGCTACATCGCCGTGG  139

Query  149  GCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCAAGAGG--GGAGCCGCGGGCGC  220
            ..|||||.|||||||||||.|||.||||||||||||||||||||||||.|||  ||||  |||||||||||.||
Sbjct  140  AGTACGTAGACGACACGCAATTCCTGCGGTTCGACAGCGACGCCGCGATTCC--GAGGATGGAGCCGCGGGAGC  211

Query  221  CGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGA-CACAGAAGTA---CAAGCGCC-AGGCACAGA  289
            |||||||||||||.|||||||||.||||||||||   |..|| ||||| .|||   |||| ||| |.|||||||
Sbjct  212  CGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGA---GTGGACCACAG-GGTACGCCAAG-GCCAACGCACAGA  280

Query  290  CTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCCTCCAGTGG  363
            |||||||||||..||||.|||||||||.|.||..||||||||||||||||||.||||||||||||||||||.|.
Sbjct  281  CTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCTGGGTCTCACACCCTCCAGGGA  354

Query  364  ATGTATGGCTGCGACCTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCAGTCCGCCTACGACGGCAAGGA  437
            |||.|||||||||||.|||||||||||||.||||||||||||||||||.|||||..|||.||||||||||||||
Sbjct  355  ATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCGTACGACGGCAAGGA  428

Query  438  TTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACGGCGGCTCAGATCACCCAGCGCAAGT  511
            |||||||.|||||||||||||||||||||||||||||||.||||||||.|.|||||||||||||||||||...|
Sbjct  429  TTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAGATCACCCAGCGCTTCT  502

Query  512  GGGAGGC---GGCCCGTGCGGCGGAG--CAGCAGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCGCA  580
            ..|||||   ||....|||.|.||||  |||.|     ||||||||||||||..||||.||||||.||||||||
Sbjct  503  ATGAGGCAGAGGAATATGCAGAGGAGTTCAGGA-----CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCA  571

Query  581  GATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGAACACCCAAAGACACACGTGACCCACCATCTCGTC  654
            |||||.|||||||.||||||||||||||.||||||||.||.|..||||||.|||||||..|||||||.|.|.||
Sbjct  572  GATACTTGGAGAATGGGAAGGAGACGCTACAGCGCGCAGATCCTCCAAAGGCACACGTTGCCCACCACCCCATC  645

Query  655  TCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCG  728
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct  646  TCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACGCTGACCTGGCAGCG  719

Query  729  GGATGGCGAGGACCAAACTCAGGACACCGAGCTTGTGGAGACCAGGCCAGCAGGAGATGGAACCTTCCAGAAGT  802
            ||||||.|||||.||.||.||||||||.||||||||||||||||||||.|||||.|||||||||||||||||||
Sbjct  720  GGATGGGGAGGAACAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGT  793

Query  803  GGGCAGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGAGATACACGTGCCATGTGCAGCACGAGGGGCTGCCGGAG  876
            ||||.|||||||||||||||.|||||||.||.|||||||||||.||||||||||||||||||||||||||..||
Sbjct  794  GGGCCGCTGTGGTGGTGCCTCCTGGAGAGGAACAGAGATACACATGCCATGTGCAGCACGAGGGGCTGCCCCAG  867

Query  877  CCCCTCACCCTGAGATGGGAGCCATCTTCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTGGCTGT  950
            |||||||.||||||||||||||..|||.||||||||||||||||||||||||||||||||||||||||.|.|||
Sbjct  868  CCCCTCATCCTGAGATGGGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGT  941

Query  951  CC-TGGCTGTCCTAGCTGT----CCTAGGAGCTGTGGTGGCTGTTGTTATGTGTAGGAGGAAGAGCTCAGGTGG  1019
            || |||       ||||||    .|| |||||||||||.||||.|||.|||||.||||.|||||||||||.|.|
Sbjct  942  CCTTGG-------AGCTGTGGTCACT-GGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGATAG  1007

Query 1020  AAAAGGAGGGAGCTGCTCTCAGGCTGCGTCCAGCAACAGTGCCCAGGG----CTCTGATGAGTCTCTCATCGCT  1089
            |||..|||||||||.||||||||||||..||..| .|||||..|||.|    || ||||||   |..||| |.|
Sbjct 1008  AAACAGAGGGAGCTACTCTCAGGCTGCAGCCTAC-TCAGTGGTCAGCGGAAACT-TGATGA---TAACAT-GGT  1075

Query 1090  TGTAAAGCC-----------------------------------------------------------------  1098
            .||.||||.                                                                 
Sbjct 1076  GGTCAAGCTTATTTCTCCTGGGGGTGCTCTTCCAAGGATATTTGGGCTGCCTCCGGAGTCACAGTGTCTTGGGC  1149

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1150  CGCCGGAAGGTGGGTGACATGTGGATCTTGTTTTTTTTGTGGCTGTGGACATCTTTCAACACTGCCTTCTTGGC  1223

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1224  CTTGCAAAGCCTTCGCTTTGGCTTCGGCTTTAGGAGGGGCAGGAGCTTCCTTCTTCGTTCTTGGCACCATCTTA  1297

Query 1099  -----------------------------  1098
                                         
Sbjct 1298  TGAAAAGGGTCCAGATTAAGATTTTTGAC  1326