Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10876
- Subject:
- NR_001434.4
- Aligned Length:
- 1712
- Identities:
- 989
- Gaps:
- 621
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTTTCTCTTCTTCTCACAACCTGCGACGGGTCCTTCTTCCTTGATACTCACGAAGCGGACACAGTTCTCATTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCACTAGGTGTCGGGTTTCTAGAGAAGCCAATCGGTGCCGCCGCGGTCCCGGTTCTAAAGTCCCCACGCACCCA 148
Query 1 -------------------------------ATGCGGGTCATGGCGCCCCGAACCCTCATCCTGCTGCTCTCGG 43
|||..|.||||||||||||||||||||.|||||||||||||.|
Sbjct 149 CCGGGACTCAGATTCTCCCCAGACGCCGAGGATGGTGCTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCAG 222
Query 44 GAGCCCTGG------CCCTGACCGAGACCTGGGCCTGCTCCCACTCCATGAGGTATTTCTACACCGCCGTGTCC 111
|.||||||| ||||||||.||||||||||..|||||||||||||||||||||||||||||.||.|||||
Sbjct 223 GGGCCCTGGCCCTGACCCTGACCCAGACCTGGGCGCGCTCCCACTCCATGAGGTATTTCTACACCACCATGTCC 296
Query 112 CGGCCCGGCCGCGGAGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAG 185
||||||||||||||.|||||||||||||||.|.||.||||||||||||||.|||||||||||||||||||||||
Sbjct 297 CGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCCGTCGGCTACGTGGACGATACGCAGTTCGTGCGGTTCGACAG 370
Query 186 CGACGCCGCGAGTCCAAGAGGGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGG 259
|||||.|||||||||.||||.|||||||||||||||||||.||||||.|||||||||.|||||||||||||||.
Sbjct 371 CGACGACGCGAGTCCGAGAGAGGAGCCGCGGGCGCCGTGGATGGAGCGGGAGGGGCCAGAGTATTGGGACCGGA 444
Query 260 AGACACAGAAGTACAAGCGCCAGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAG 333
|.|||||||..|.||||..|||||||||||||||.||||.||.||||||||.|..||.|.||||||||||||||
Sbjct 445 ACACACAGATCTGCAAGGCCCAGGCACAGACTGAACGAGAGAACCTGCGGATCGCGCTCCGCTACTACAACCAG 518
Query 334 AGCGAGGCCGGGTCTCACACCCTCCAGTGGATGTATGGCTGCGACCTGGGGCCCGACGGGCGCCTCCTCCGCGG 407
|||||||.|||.|||||||||.|.|||..||||||||||||||||.|||||||||||||||||.||||||||||
Sbjct 519 AGCGAGGGCGGTTCTCACACCATGCAGGTGATGTATGGCTGCGACGTGGGGCCCGACGGGCGCTTCCTCCGCGG 592
Query 408 GTATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGG 481
||||||.|||..|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 593 GTATGAACAGCACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGG 666
Query 482 ACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGCGGCGGAGCAGCAGAGAGCCTACCTGGAG 555
|||.|||.||||||||||||.|||||||||||||||||||||||..|||||||||||.||||||||||||||||
Sbjct 667 ACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCCGTCGGGCGGAGCAGCTGAGAGCCTACCTGGAG 740
Query 556 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGA-ACACCCAA 628
|||..||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||| .|.|||.|
Sbjct 741 GGCGAGTTCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGACCCCCCCCA 814
Query 629 AGACACACGTGACCCACCATCTCGTCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCT 702
|||||||..||||||||||.|.|.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGACACATATGACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCT 888
Query 703 GCGGAGATCACACTGACCTGGCAGCGGGATGGCGAGGACCAAACTCAGGACACCGAGCTTGTGGAGACCAGGCC 776
||||||||||||||||||||||||||||||||.||||||||.||.||||||||.|||||.||||||||||||||
Sbjct 889 GCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTCGTGGAGACCAGGCC 962
Query 777 AGCAGGAGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGAGATACACGTGCC 850
.|||||.|||||||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||.||||
Sbjct 963 TGCAGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACCTGCC 1036
Query 851 ATGTGCAGCACGAGGGGCTGCCGGAGCCCCTCACCCTGAGATGGGAGCCATCTTCCCAGCCCACCATCCCCATC 924
||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||||.|.||||||||
Sbjct 1037 ATGTGCAGCATGAGGGTCTGCCCGAGCCCCTCACCCTGAGATGGGAGCCATCTTCCCAGCCCAACGTCCCCATC 1110
Query 925 GTGGGCATCGTTGCTGGCCTGGCTGTCCTGGCTGTCCTAGCTGT----CCTAGGAGCTGTGGTGGCTGTTGTTA 994
||||||||||||||||||||||.|.|.||.| ||||||| .|| |||||||||||.||||.|||.|
Sbjct 1111 GTGGGCATCGTTGCTGGCCTGGTTCTACTTG------TAGCTGTGGTCACT-GGAGCTGTGGTCGCTGCTGTAA 1177
Query 995 TGTGTAGGAGGAAGAGCTCAGGTGGAAAAGGAGGGAGCTGCTCTCAGGCTGCGTCCAGCAACAGTGCCCAGGGC 1068
||||.||||.|||||||||||.|.|||||||||||||||.||||||||||||...|||||||||||||||||||
Sbjct 1178 TGTGGAGGAAGAAGAGCTCAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGCAGCAACAGTGCCCAGGGC 1251
Query 1069 TCTGATGAGTCTCTCATCGCTTGTAA-----AGCC--------------------------------------- 1098
|||||||.||||||||..|||||.|| ||.|
Sbjct 1252 TCTGATGTGTCTCTCACGGCTTGAAAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAGGCAAGAGTTGTTCCT 1325
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1326 GCCTTCCCTTTGTGACTTGAAGAACCCTGACTTTCTTTCTACAAAGGCACCTGAATGTGTCTGTGTTCCTGTAG 1399
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1400 GCATAATGTGTGGAGGAGGGGAGACCAACCCACCCTCATGTCCACCATGACCCTCTTCCCCACGCTGATCTGTG 1473
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1474 TTCCCTCCCCAATCATCTTTCCTGTTCCAGAGAGGAGGGGCTGAGATGTCTCCATCTTTTTCTCAACTTTATGT 1547
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1548 GCACTGAGCTGTAACTTCTTACTTCCCTCTTAAAATTAGAATCTGAGTAAACATTTACTTTTTCAAATTCTTGC 1621
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1622 CATGAGAGGTTGATGACTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAACACATGAG 1695
Query 1099 ---------- 1098
Sbjct 1696 AACCTTCCAG 1705
