Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10876
Subject:
NR_001434.4
Aligned Length:
1712
Identities:
989
Gaps:
621

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTTTCTCTTCTTCTCACAACCTGCGACGGGTCCTTCTTCCTTGATACTCACGAAGCGGACACAGTTCTCATTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCACTAGGTGTCGGGTTTCTAGAGAAGCCAATCGGTGCCGCCGCGGTCCCGGTTCTAAAGTCCCCACGCACCCA  148

Query    1  -------------------------------ATGCGGGTCATGGCGCCCCGAACCCTCATCCTGCTGCTCTCGG  43
                                           |||..|.||||||||||||||||||||.|||||||||||||.|
Sbjct  149  CCGGGACTCAGATTCTCCCCAGACGCCGAGGATGGTGCTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCAG  222

Query   44  GAGCCCTGG------CCCTGACCGAGACCTGGGCCTGCTCCCACTCCATGAGGTATTTCTACACCGCCGTGTCC  111
            |.|||||||      ||||||||.||||||||||..|||||||||||||||||||||||||||||.||.|||||
Sbjct  223  GGGCCCTGGCCCTGACCCTGACCCAGACCTGGGCGCGCTCCCACTCCATGAGGTATTTCTACACCACCATGTCC  296

Query  112  CGGCCCGGCCGCGGAGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAG  185
            ||||||||||||||.|||||||||||||||.|.||.||||||||||||||.|||||||||||||||||||||||
Sbjct  297  CGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCCGTCGGCTACGTGGACGATACGCAGTTCGTGCGGTTCGACAG  370

Query  186  CGACGCCGCGAGTCCAAGAGGGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGG  259
            |||||.|||||||||.||||.|||||||||||||||||||.||||||.|||||||||.|||||||||||||||.
Sbjct  371  CGACGACGCGAGTCCGAGAGAGGAGCCGCGGGCGCCGTGGATGGAGCGGGAGGGGCCAGAGTATTGGGACCGGA  444

Query  260  AGACACAGAAGTACAAGCGCCAGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAG  333
            |.|||||||..|.||||..|||||||||||||||.||||.||.||||||||.|..||.|.||||||||||||||
Sbjct  445  ACACACAGATCTGCAAGGCCCAGGCACAGACTGAACGAGAGAACCTGCGGATCGCGCTCCGCTACTACAACCAG  518

Query  334  AGCGAGGCCGGGTCTCACACCCTCCAGTGGATGTATGGCTGCGACCTGGGGCCCGACGGGCGCCTCCTCCGCGG  407
            |||||||.|||.|||||||||.|.|||..||||||||||||||||.|||||||||||||||||.||||||||||
Sbjct  519  AGCGAGGGCGGTTCTCACACCATGCAGGTGATGTATGGCTGCGACGTGGGGCCCGACGGGCGCTTCCTCCGCGG  592

Query  408  GTATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGG  481
            ||||||.|||..|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct  593  GTATGAACAGCACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGG  666

Query  482  ACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGCGGCGGAGCAGCAGAGAGCCTACCTGGAG  555
            |||.|||.||||||||||||.|||||||||||||||||||||||..|||||||||||.||||||||||||||||
Sbjct  667  ACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCCGTCGGGCGGAGCAGCTGAGAGCCTACCTGGAG  740

Query  556  GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGA-ACACCCAA  628
            |||..||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||| .|.|||.|
Sbjct  741  GGCGAGTTCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGACCCCCCCCA  814

Query  629  AGACACACGTGACCCACCATCTCGTCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCT  702
            |||||||..||||||||||.|.|.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGACACATATGACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCT  888

Query  703  GCGGAGATCACACTGACCTGGCAGCGGGATGGCGAGGACCAAACTCAGGACACCGAGCTTGTGGAGACCAGGCC  776
            ||||||||||||||||||||||||||||||||.||||||||.||.||||||||.|||||.||||||||||||||
Sbjct  889  GCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTCGTGGAGACCAGGCC  962

Query  777  AGCAGGAGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGAGATACACGTGCC  850
            .|||||.|||||||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||.||||
Sbjct  963  TGCAGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACCTGCC  1036

Query  851  ATGTGCAGCACGAGGGGCTGCCGGAGCCCCTCACCCTGAGATGGGAGCCATCTTCCCAGCCCACCATCCCCATC  924
            ||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||||.|.||||||||
Sbjct 1037  ATGTGCAGCATGAGGGTCTGCCCGAGCCCCTCACCCTGAGATGGGAGCCATCTTCCCAGCCCAACGTCCCCATC  1110

Query  925  GTGGGCATCGTTGCTGGCCTGGCTGTCCTGGCTGTCCTAGCTGT----CCTAGGAGCTGTGGTGGCTGTTGTTA  994
            ||||||||||||||||||||||.|.|.||.|      |||||||    .|| |||||||||||.||||.|||.|
Sbjct 1111  GTGGGCATCGTTGCTGGCCTGGTTCTACTTG------TAGCTGTGGTCACT-GGAGCTGTGGTCGCTGCTGTAA  1177

Query  995  TGTGTAGGAGGAAGAGCTCAGGTGGAAAAGGAGGGAGCTGCTCTCAGGCTGCGTCCAGCAACAGTGCCCAGGGC  1068
            ||||.||||.|||||||||||.|.|||||||||||||||.||||||||||||...|||||||||||||||||||
Sbjct 1178  TGTGGAGGAAGAAGAGCTCAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGCAGCAACAGTGCCCAGGGC  1251

Query 1069  TCTGATGAGTCTCTCATCGCTTGTAA-----AGCC---------------------------------------  1098
            |||||||.||||||||..|||||.||     ||.|                                       
Sbjct 1252  TCTGATGTGTCTCTCACGGCTTGAAAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAGGCAAGAGTTGTTCCT  1325

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1326  GCCTTCCCTTTGTGACTTGAAGAACCCTGACTTTCTTTCTACAAAGGCACCTGAATGTGTCTGTGTTCCTGTAG  1399

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1400  GCATAATGTGTGGAGGAGGGGAGACCAACCCACCCTCATGTCCACCATGACCCTCTTCCCCACGCTGATCTGTG  1473

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1474  TTCCCTCCCCAATCATCTTTCCTGTTCCAGAGAGGAGGGGCTGAGATGTCTCCATCTTTTTCTCAACTTTATGT  1547

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1548  GCACTGAGCTGTAACTTCTTACTTCCCTCTTAAAATTAGAATCTGAGTAAACATTTACTTTTTCAAATTCTTGC  1621

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1622  CATGAGAGGTTGATGACTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAACACATGAG  1695

Query 1099  ----------  1098
                      
Sbjct 1696  AACCTTCCAG  1705

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