Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10876
- Subject:
- XR_001743373.1
- Aligned Length:
- 3261
- Identities:
- 946
- Gaps:
- 2189
Alignment
Query 1 -------------ATGC--------GGGTCATGGCGCCCCGAACCCTCATCCTGCTGCTCTCGGGAGCCCTGGC 53
|.|| ||||||||||||||||||.||||.|||||||||||||.||.||||||||
Sbjct 1 ATATTTTTCCCAGACGCGGAGGTTGGGGTCATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGGC 74
Query 54 CCTGACCGAGACCTGGGCCTGCTCCCACTCCATGAGGTATTTCTACACCGCCGTGTCCCGGCCCGGCCGCGGAG 127
|||||||||.||.|||||..|||||||||||.|||||||||||..||||||.|||||.||||||||||||||.|
Sbjct 75 CCTGACCGATACTTGGGCGGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGGG 148
Query 128 AGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCA 201
|||||||||.||||||.||||..|||||.|||||||||||.|||.||||||||||||||||||||||||.|||
Sbjct 149 AGCCCCGCTACATCGCCGTGGAGTACGTAGACGACACGCAATTCCTGCGGTTCGACAGCGACGCCGCGATTCC- 221
Query 202 AGAGG--GGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGA-CACAGAAGTA 272
|||| |||||||||||.|||||||||||||||.|||||||||.|||||||||| |..|| ||||| .|||
Sbjct 222 -GAGGATGGAGCCGCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGA---GTGGACCACAG-GGTA 290
Query 273 ---CAAGCGCC-AGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCC 342
|||| ||| |.||||||||||||||||||..||||.|||||||||.|.||..||||||||||||||||||.
Sbjct 291 CGCCAAG-GCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCT 363
Query 343 GGGTCTCACACCCTCCAGTGGATGTATGGCTGCGACCTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCA 416
||||||||||||||||||.|.|||.|||||||||||.|||||||||||||.||||||||||||||||||.||||
Sbjct 364 GGGTCTCACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCA 437
Query 417 GTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACGGCGG 490
|..|||.|||||||||||||||||||||.|||||||||||||||||||||||||||||||.||||||||.|.||
Sbjct 438 GCACGCGTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGG 511
Query 491 CTCAGATCACCCAGCGCAAGTGGGAGGC---GGCCCGTGCGGCGGAG--CAGCAGAGAGCCTACCTGGAGGGCA 559
|||||||||||||||||...|..||||| ||....|||.|.|||| |||.| ||||||||||||||.
Sbjct 512 CTCAGATCACCCAGCGCTTCTATGAGGCAGAGGAATATGCAGAGGAGTTCAGGA-----CCTACCTGGAGGGCG 580
Query 560 CGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGAACACCCAAAGACA 633
.||||.||||||.|||||||||||||.|||||||.||||||||||||||.||||||||.||.|..||||||.||
Sbjct 581 AGTGCCTGGAGTTGCTCCGCAGATACTTGGAGAATGGGAAGGAGACGCTACAGCGCGCAGATCCTCCAAAGGCA 654
Query 634 CACGTGACCCACCATCTCGTCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGA 707
|||||..|||||||.|.|.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CACGTTGCCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGA 728
Query 708 GATCACACTGACCTGGCAGCGGGATGGCGAGGACCAAACTCAGGACACCGAGCTTGTGGAGACCAGGCCAGCAG 781
||||||.||||||||||||||||||||.|||||.||.||.||||||||.||||||||||||||||||||.||||
Sbjct 729 GATCACGCTGACCTGGCAGCGGGATGGGGAGGAACAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGCAG 802
Query 782 GAGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGAGATACACGTGCCATGTG 855
|.|||||||||||||||||||||||.|||||||||||||||.|||||||.||.|||||||||||.|||||||||
Sbjct 803 GGGATGGAACCTTCCAGAAGTGGGCCGCTGTGGTGGTGCCTCCTGGAGAGGAACAGAGATACACATGCCATGTG 876
Query 856 CAGCACGAGGGGCTGCCGGAGCCCCTCACCCTGAGATGGGAGCCATCTTCCCAGCCCACCATCCCCATCGTGGG 929
|||||||||||||||||..|||||||||.||||||||||||||..|||.|||||||||||||||||||||||||
Sbjct 877 CAGCACGAGGGGCTGCCCCAGCCCCTCATCCTGAGATGGGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGG 950
Query 930 CATCGTTGCTGGCCTGGCTGTCC-TGGCTGTCCTAGCTGT----CCTAGGAGCTGTGGTGGCTGTTGTTATGTG 998
|||||||||||||||.|.||||| ||| |||||| .|| |||||||||||.||||.|||.|||||
Sbjct 951 CATCGTTGCTGGCCTTGTTGTCCTTGG-------AGCTGTGGTCACT-GGAGCTGTGGTCGCTGCTGTGATGTG 1016
Query 999 TAGGAGGAAGAGCTCAGGTGGAAAAGGAGGGAGCTGCTCTCAGGCTGCGTCCAGCAACAGTGCCCAGGG----C 1068
.||||.|||||||||||.|.||||..|||||||||.||||||||||||..||..| .|||||..|||.| |
Sbjct 1017 GAGGAAGAAGAGCTCAGATAGAAACAGAGGGAGCTACTCTCAGGCTGCAGCCTAC-TCAGTGGTCAGCGGAAAC 1089
Query 1069 TCTGATGAGTCTCTCATCGCTTGTAAAGCC-------------------------------------------- 1098
| |||||| |..||| |.|.||.||||.
Sbjct 1090 T-TGATGA---TAACAT-GGTGGTCAAGCTTATTTCTCCTGGGGGTGCTCTTCCAAGGATATTTGGGCTGCCTC 1158
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1159 CGGAGTCACAGTGTCTTGGGCCGCCGGAAGGAAAGTTGACTCATACTGGTGTCCAGTGAAGAAACCCAGGCGCA 1232
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1233 TAAGAGGGACAGTTGGATCTCAGGGAGGACTGTCTTCTTCTCACCTCCCCGGACGATGCTTCTTGACACAGGAA 1306
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1307 AGAGGATGTGCTGCTAGGGTCATCATGTCCTGGTTTATTGTGTTGTCAGTAGAATGAAATCAAAATACATACTT 1380
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1381 CATAAATAATAAAATAACCCATAATAAGTAAACATTTACAATTTACTCACACCATTGAGGTTTCCTCCAGGTGT 1454
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1455 GAGCACAGCTGCAGACACACCTTGTCGCTTCAGTCAGGACACAGGACAGAGTAAAATGGGAAGAAACCACAGTC 1528
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1529 ACTGCAGAAAGGGCCCCCATGGAAGAGGCCTGGCAGGGAGGCCAGCTGCCCCAGGGCCACCATATTTAGAGATG 1602
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1603 ACTTCCCCTTTCTAGGCAGGACTGGGATTTTAAAATTCTTTTTGTATTCATAGTTGTTCTGAAATTGCAGGATG 1676
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1677 ATGAGACCCAGCACTGGTGAGTTATACTGTCTCTTTCTTCCCTATTAAATTCTGTGCCAAACAGCACCTTCATA 1750
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1751 TATTTATCTCCTCTTCCTGGAGAGAATAAAAACAATGGAAAAATTGAACCATACAAACATACTTTAAATATGTG 1824
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1825 CTGTCAGAAGTAGCTACTAAAGGATTAATTCCACCAAAGTGAGGGAAGGTTTGAAAAGAAAAACATTGTATACC 1898
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1899 CATATTCAAAGCAGCATTATTCACGATAGCCAAGACAACACACACCAACACATGAATGAAGAAAATGTGGTATA 1972
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1973 TATCGACAACGGAATATCATTCAGCCTTAAGAAGGAAACCTGGTCACAGGCTGCAACAGGGATAAACCTGAAGG 2046
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2047 ACACTGCTAAGTAAAATAAGCCAATCACAAAGAAAACCCAATACTGCACATTTCCATTTATATGAGGTGTCTAA 2120
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2121 ACTGAAAGTAGACTAATGGCTGCTAGGGGCTCGGTGAGGGGGATGGATGAATGTTTGTTCAATGGGCATAGAGT 2194
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2195 TTCAGTGTTGCAAGATGAAAAGTTCTAGAGATCTGTTGCACAACTATGTATTTACAGTTAATACTGTACTACTG 2268
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2269 TATACTTTAAAATAGTTAAGATACCAAATTTTACATAATGTAGTTTTTGGCCCAAGGAAAAGACTAATTAGCCC 2342
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2343 TGTTACTAATTTAGGGAAAAAGTACATGAATTCATTAAAAATATATTAGTATGCGCTTACCTTAGATACAGAAA 2416
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2417 ACTATGAGACAAAAAGAGAGATCCCTGCTACCCCAGCTATCACCCATGAACCAGGAAAATCAGCACCTCCTGAA 2490
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2491 ACTAGACAGAAAGGCTCACAGGCCCAGCCTTGACATGTTGAATCAGTCTGCATTTTGGCTGGAACCCAGGTGGC 2564
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2565 TCCACTGCATGTAAAGCACCTTCCCAGATAGTGATGGAGGGAGATCCTAGGACAGTGACTCTGCTCCACGGGGA 2638
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2639 GAAGCCTCCAGTCCAGATGGGAGCAGCCAGAAGGGCCCAGGAGGGACATTTCCAAGAAGATAAAATTAACAGAA 2712
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2713 TGTCCAAAGTGTCCAACGTCTTGAAAGAATCATACAAACAAAAGAGATATCAAACTTAAATTAATGAGAGTTAA 2786
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2787 TAAAATAAACAAAAACAAATGCAAGTATTAACTCCAAGAAGAACCAATGTTGTACAGGCAGTGAAAAGTAGTCC 2860
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2861 AGTTGACATATGAGAGGATTAGTCATGGTAAAAGAAACAAGAGATGGCTGAACTAAACATAATCACTATATAAA 2934
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2935 TATACTGGGAAGAGTGAAAGAGAACAAGTACTCTTAACTGTTGCATCCACCATTGCGCTGTGCAACAATGGGTG 3008
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 3009 CATCTGAAAAAAATCAAGCAATAATAATAAAGAAATGGTAGTTAGAGATACAGAAGTAAAGTCAAAAGAATCAG 3082
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 3083 CTAAAAAACTTGAAAGTGGTTGGCCCCTAGAAAGGCAGAAATTGAGAAGAGGCAGAGAGGACTCTCATTTTTCT 3156
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 3157 CAAGAGATTCTGCACAAATATTTGACTCTTTCAATTGTGCACAATTATAAATTTGATTAAAATAAAAACAAAAG 3230
Query 1099 ----- 1098
Sbjct 3231 CTTCA 3235
