Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10876
Subject:
XR_001743373.1
Aligned Length:
3261
Identities:
946
Gaps:
2189

Alignment

Query    1  -------------ATGC--------GGGTCATGGCGCCCCGAACCCTCATCCTGCTGCTCTCGGGAGCCCTGGC  53
                         |.||        ||||||||||||||||||.||||.|||||||||||||.||.||||||||
Sbjct    1  ATATTTTTCCCAGACGCGGAGGTTGGGGTCATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGGC  74

Query   54  CCTGACCGAGACCTGGGCCTGCTCCCACTCCATGAGGTATTTCTACACCGCCGTGTCCCGGCCCGGCCGCGGAG  127
            |||||||||.||.|||||..|||||||||||.|||||||||||..||||||.|||||.||||||||||||||.|
Sbjct   75  CCTGACCGATACTTGGGCGGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGGG  148

Query  128  AGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCA  201
            |||||||||.||||||.||||..|||||.|||||||||||.|||.||||||||||||||||||||||||.||| 
Sbjct  149  AGCCCCGCTACATCGCCGTGGAGTACGTAGACGACACGCAATTCCTGCGGTTCGACAGCGACGCCGCGATTCC-  221

Query  202  AGAGG--GGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGA-CACAGAAGTA  272
             ||||  |||||||||||.|||||||||||||||.|||||||||.||||||||||   |..|| ||||| .|||
Sbjct  222  -GAGGATGGAGCCGCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGA---GTGGACCACAG-GGTA  290

Query  273  ---CAAGCGCC-AGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCC  342
               |||| ||| |.||||||||||||||||||..||||.|||||||||.|.||..||||||||||||||||||.
Sbjct  291  CGCCAAG-GCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCT  363

Query  343  GGGTCTCACACCCTCCAGTGGATGTATGGCTGCGACCTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCA  416
            ||||||||||||||||||.|.|||.|||||||||||.|||||||||||||.||||||||||||||||||.||||
Sbjct  364  GGGTCTCACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCA  437

Query  417  GTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACGGCGG  490
            |..|||.|||||||||||||||||||||.|||||||||||||||||||||||||||||||.||||||||.|.||
Sbjct  438  GCACGCGTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGG  511

Query  491  CTCAGATCACCCAGCGCAAGTGGGAGGC---GGCCCGTGCGGCGGAG--CAGCAGAGAGCCTACCTGGAGGGCA  559
            |||||||||||||||||...|..|||||   ||....|||.|.||||  |||.|     ||||||||||||||.
Sbjct  512  CTCAGATCACCCAGCGCTTCTATGAGGCAGAGGAATATGCAGAGGAGTTCAGGA-----CCTACCTGGAGGGCG  580

Query  560  CGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGAACACCCAAAGACA  633
            .||||.||||||.|||||||||||||.|||||||.||||||||||||||.||||||||.||.|..||||||.||
Sbjct  581  AGTGCCTGGAGTTGCTCCGCAGATACTTGGAGAATGGGAAGGAGACGCTACAGCGCGCAGATCCTCCAAAGGCA  654

Query  634  CACGTGACCCACCATCTCGTCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGA  707
            |||||..|||||||.|.|.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  655  CACGTTGCCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGA  728

Query  708  GATCACACTGACCTGGCAGCGGGATGGCGAGGACCAAACTCAGGACACCGAGCTTGTGGAGACCAGGCCAGCAG  781
            ||||||.||||||||||||||||||||.|||||.||.||.||||||||.||||||||||||||||||||.||||
Sbjct  729  GATCACGCTGACCTGGCAGCGGGATGGGGAGGAACAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGCAG  802

Query  782  GAGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGAGATACACGTGCCATGTG  855
            |.|||||||||||||||||||||||.|||||||||||||||.|||||||.||.|||||||||||.|||||||||
Sbjct  803  GGGATGGAACCTTCCAGAAGTGGGCCGCTGTGGTGGTGCCTCCTGGAGAGGAACAGAGATACACATGCCATGTG  876

Query  856  CAGCACGAGGGGCTGCCGGAGCCCCTCACCCTGAGATGGGAGCCATCTTCCCAGCCCACCATCCCCATCGTGGG  929
            |||||||||||||||||..|||||||||.||||||||||||||..|||.|||||||||||||||||||||||||
Sbjct  877  CAGCACGAGGGGCTGCCCCAGCCCCTCATCCTGAGATGGGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGG  950

Query  930  CATCGTTGCTGGCCTGGCTGTCC-TGGCTGTCCTAGCTGT----CCTAGGAGCTGTGGTGGCTGTTGTTATGTG  998
            |||||||||||||||.|.||||| |||       ||||||    .|| |||||||||||.||||.|||.|||||
Sbjct  951  CATCGTTGCTGGCCTTGTTGTCCTTGG-------AGCTGTGGTCACT-GGAGCTGTGGTCGCTGCTGTGATGTG  1016

Query  999  TAGGAGGAAGAGCTCAGGTGGAAAAGGAGGGAGCTGCTCTCAGGCTGCGTCCAGCAACAGTGCCCAGGG----C  1068
            .||||.|||||||||||.|.||||..|||||||||.||||||||||||..||..| .|||||..|||.|    |
Sbjct 1017  GAGGAAGAAGAGCTCAGATAGAAACAGAGGGAGCTACTCTCAGGCTGCAGCCTAC-TCAGTGGTCAGCGGAAAC  1089

Query 1069  TCTGATGAGTCTCTCATCGCTTGTAAAGCC--------------------------------------------  1098
            | ||||||   |..||| |.|.||.||||.                                            
Sbjct 1090  T-TGATGA---TAACAT-GGTGGTCAAGCTTATTTCTCCTGGGGGTGCTCTTCCAAGGATATTTGGGCTGCCTC  1158

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1159  CGGAGTCACAGTGTCTTGGGCCGCCGGAAGGAAAGTTGACTCATACTGGTGTCCAGTGAAGAAACCCAGGCGCA  1232

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1233  TAAGAGGGACAGTTGGATCTCAGGGAGGACTGTCTTCTTCTCACCTCCCCGGACGATGCTTCTTGACACAGGAA  1306

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1307  AGAGGATGTGCTGCTAGGGTCATCATGTCCTGGTTTATTGTGTTGTCAGTAGAATGAAATCAAAATACATACTT  1380

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1381  CATAAATAATAAAATAACCCATAATAAGTAAACATTTACAATTTACTCACACCATTGAGGTTTCCTCCAGGTGT  1454

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1455  GAGCACAGCTGCAGACACACCTTGTCGCTTCAGTCAGGACACAGGACAGAGTAAAATGGGAAGAAACCACAGTC  1528

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1529  ACTGCAGAAAGGGCCCCCATGGAAGAGGCCTGGCAGGGAGGCCAGCTGCCCCAGGGCCACCATATTTAGAGATG  1602

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1603  ACTTCCCCTTTCTAGGCAGGACTGGGATTTTAAAATTCTTTTTGTATTCATAGTTGTTCTGAAATTGCAGGATG  1676

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1677  ATGAGACCCAGCACTGGTGAGTTATACTGTCTCTTTCTTCCCTATTAAATTCTGTGCCAAACAGCACCTTCATA  1750

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1751  TATTTATCTCCTCTTCCTGGAGAGAATAAAAACAATGGAAAAATTGAACCATACAAACATACTTTAAATATGTG  1824

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1825  CTGTCAGAAGTAGCTACTAAAGGATTAATTCCACCAAAGTGAGGGAAGGTTTGAAAAGAAAAACATTGTATACC  1898

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1899  CATATTCAAAGCAGCATTATTCACGATAGCCAAGACAACACACACCAACACATGAATGAAGAAAATGTGGTATA  1972

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 1973  TATCGACAACGGAATATCATTCAGCCTTAAGAAGGAAACCTGGTCACAGGCTGCAACAGGGATAAACCTGAAGG  2046

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2047  ACACTGCTAAGTAAAATAAGCCAATCACAAAGAAAACCCAATACTGCACATTTCCATTTATATGAGGTGTCTAA  2120

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2121  ACTGAAAGTAGACTAATGGCTGCTAGGGGCTCGGTGAGGGGGATGGATGAATGTTTGTTCAATGGGCATAGAGT  2194

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2195  TTCAGTGTTGCAAGATGAAAAGTTCTAGAGATCTGTTGCACAACTATGTATTTACAGTTAATACTGTACTACTG  2268

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2269  TATACTTTAAAATAGTTAAGATACCAAATTTTACATAATGTAGTTTTTGGCCCAAGGAAAAGACTAATTAGCCC  2342

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2343  TGTTACTAATTTAGGGAAAAAGTACATGAATTCATTAAAAATATATTAGTATGCGCTTACCTTAGATACAGAAA  2416

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2417  ACTATGAGACAAAAAGAGAGATCCCTGCTACCCCAGCTATCACCCATGAACCAGGAAAATCAGCACCTCCTGAA  2490

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2491  ACTAGACAGAAAGGCTCACAGGCCCAGCCTTGACATGTTGAATCAGTCTGCATTTTGGCTGGAACCCAGGTGGC  2564

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2565  TCCACTGCATGTAAAGCACCTTCCCAGATAGTGATGGAGGGAGATCCTAGGACAGTGACTCTGCTCCACGGGGA  2638

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2639  GAAGCCTCCAGTCCAGATGGGAGCAGCCAGAAGGGCCCAGGAGGGACATTTCCAAGAAGATAAAATTAACAGAA  2712

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2713  TGTCCAAAGTGTCCAACGTCTTGAAAGAATCATACAAACAAAAGAGATATCAAACTTAAATTAATGAGAGTTAA  2786

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2787  TAAAATAAACAAAAACAAATGCAAGTATTAACTCCAAGAAGAACCAATGTTGTACAGGCAGTGAAAAGTAGTCC  2860

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2861  AGTTGACATATGAGAGGATTAGTCATGGTAAAAGAAACAAGAGATGGCTGAACTAAACATAATCACTATATAAA  2934

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 2935  TATACTGGGAAGAGTGAAAGAGAACAAGTACTCTTAACTGTTGCATCCACCATTGCGCTGTGCAACAATGGGTG  3008

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 3009  CATCTGAAAAAAATCAAGCAATAATAATAAAGAAATGGTAGTTAGAGATACAGAAGTAAAGTCAAAAGAATCAG  3082

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 3083  CTAAAAAACTTGAAAGTGGTTGGCCCCTAGAAAGGCAGAAATTGAGAAGAGGCAGAGAGGACTCTCATTTTTCT  3156

Query 1099  --------------------------------------------------------------------------  1098
                                                                                      
Sbjct 3157  CAAGAGATTCTGCACAAATATTTGACTCTTTCAATTGTGCACAATTATAAATTTGATTAAAATAAAAACAAAAG  3230

Query 1099  -----  1098
                 
Sbjct 3231  CTTCA  3235

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