Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10876
- Subject:
- XR_001743376.1
- Aligned Length:
- 3353
- Identities:
- 933
- Gaps:
- 2301
Alignment
Query 1 ------ATGC--------GGGTCATGGCGCCCCGAACCCTCATCCTGCTGCTCTCGGGAGCCCTGGCCCTGACC 60
|.|| ||||||||||||||||||.||||.|||||||||||||.||.|||||||||||||||
Sbjct 1 TCCCAGACGCGGAGGTTGGGGTCATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGGCCCTGACC 74
Query 61 GAGACCTGGGCCTGCTCCCACTCCATGAGGTATTTCTACACCGCCGTGTCCCGGCCCGGCCGCGGAGAGCCCCG 134
||.||.|||||..|||||||||||.|||||||||||..||||||.|||||.||||||||||||||.||||||||
Sbjct 75 GATACTTGGGCGGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGGGAGCCCCG 148
Query 135 CTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCAAGAGG-- 206
||.||||||.||||..|||||.|||||||||||.|||.||||||||||||||||||||||||.||| ||||
Sbjct 149 CTACATCGCCGTGGAGTACGTAGACGACACGCAATTCCTGCGGTTCGACAGCGACGCCGCGATTCC--GAGGAT 220
Query 207 GGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGA-CACAGAAGTA---CAAG 276
|||||||||||.|||||||||||||||.|||||||||.|||||||||| |..|| ||||| .||| ||||
Sbjct 221 GGAGCCGCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGA---GTGGACCACAG-GGTACGCCAAG 290
Query 277 CGCC-AGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCTC 349
||| |.||||||||||||||||||..||||.|||||||||.|.||..||||||||||||||||||.||
Sbjct 291 -GCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCTGG----- 358
Query 350 ACACCCTCCAGTGGATGTATGGCTGCGACCTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCAGTCCGCC 423
|.|||.|||||||||||.|||||||||||||.||||||||||||||||||.|||||..|||.
Sbjct 359 ------------GAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCG 420
Query 424 TACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACGGCGGCTCAGAT 497
|||||||||||||||||||||.|||||||||||||||||||||||||||||||.||||||||.|.|||||||||
Sbjct 421 TACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAGAT 494
Query 498 CACCCAGCGCAAGTGGGAGGC---GGCCCGTGCGGCGGAG--CAGCAGAGAGCCTACCTGGAGGGCACGTGCGT 566
||||||||||...|..||||| ||....|||.|.|||| |||.| ||||||||||||||..||||.|
Sbjct 495 CACCCAGCGCTTCTATGAGGCAGAGGAATATGCAGAGGAGTTCAGGA-----CCTACCTGGAGGGCGAGTGCCT 563
Query 567 GGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGAACACCCAAAGACACACGTGA 640
|||||.|||||||||||||.|||||||.||||||||||||||.||||||||.||.|..||||||.|||||||..
Sbjct 564 GGAGTTGCTCCGCAGATACTTGGAGAATGGGAAGGAGACGCTACAGCGCGCAGATCCTCCAAAGGCACACGTTG 637
Query 641 CCCACCATCTCGTCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACA 714
|||||||.|.|.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 638 CCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACG 711
Query 715 CTGACCTGGCAGCGGGATGGCGAGGACCAAACTCAGGACACCGAGCTTGTGGAGACCAGGCCAGCAGGAGATGG 788
||||||||||||||||||||.|||||.||.||.||||||||.||||||||||||||||||||.|||||.|||||
Sbjct 712 CTGACCTGGCAGCGGGATGGGGAGGAACAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGCAGGGGATGG 785
Query 789 AACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGAGATACACGTGCCATGTGCAGCACG 862
||||||||||||||||||.|||||||||||||||.|||||||.||.|||||||||||.||||||||||||||||
Sbjct 786 AACCTTCCAGAAGTGGGCCGCTGTGGTGGTGCCTCCTGGAGAGGAACAGAGATACACATGCCATGTGCAGCACG 859
Query 863 AGGGGCTGCCGGAGCCCCTCACCCTGAGATGGGAGCCATCTTCCCAGCCCACCATCCCCATCGTGGGCATCGTT 936
||||||||||..|||||||||.||||||||||||||..|||.||||||||||||||||||||||||||||||||
Sbjct 860 AGGGGCTGCCCCAGCCCCTCATCCTGAGATGGGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGGCATCGTT 933
Query 937 GCTGGCCTGGCTGTCC-TGGCTGTCCTAGCTGT----CCTAGGAGCTGTGGTGGCTGTTGTTATGTGTAGGAGG 1005
||||||||.|.||||| ||| |||||| .|| |||||||||||.||||.|||.|||||.||||.|
Sbjct 934 GCTGGCCTTGTTGTCCTTGG-------AGCTGTGGTCACT-GGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAG 999
Query 1006 AAGAGCTCAG---------------GTGGAAA----AGGA----------------------------GGGAGC 1032
|||||||||| |.||||| |.|| ||| |.
Sbjct 1000 AAGAGCTCAGCCTACTCAGTGGTCAGCGGAAACTTGATGATAACATGGTGGTCAAGCTTATTTCTCCTGGG-GG 1072
Query 1033 TGCTCT--CA----------GGCTGCGTCC--AGCAACAGTGCCCAGGGC-------------TCTGATGAGTC 1079
|||||| || ||||||.||| ||..||||||.|..|||| |||.|.|| |
Sbjct 1073 TGCTCTTCCAAGGATATTTGGGCTGCCTCCGGAGTCACAGTGTCTTGGGCCGCCGGAAGCATTTCTAAGGA--C 1144
Query 1080 TCTCATCGCTTGTAA---------------AGCC---------------------------------------- 1098
|.||| |||| |||.
Sbjct 1145 TTTCA------GTAATGGAGATTCTATATTAGCTTAGAGAGAATTGTTTCAAAACATCAGAAATGTATACTTGA 1212
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1213 ATGAAGGACAACATGCATGGAGAAAGGTGGACAAACCATAAGTGGGCCGTGGATTTTCACAAAGTGAACACTCA 1286
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1287 GGAAAGTTGACTCATACTGGTGTCCAGTGAAGAAACCCAGGCGCATAAGAGGGACAGTTGGATCTCAGGTTTGT 1360
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1361 GCTTGATCTGGAAAAGGAAGAGCAGAGACCACTAGGAGGCACCACTGCACTGCTCATGAGCCCAGGAGGTGGAT 1434
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1435 GCCGGGGCTGAGCTCAGGGTGGAGAGATGTCATTGCTCATCCTCCAGGTTCCAGGTGAAAACCCACCTGCCCAG 1508
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1509 CCCATCTGGTTCTCCCTGGTTCTTCAATTCTAGGGAGGACTGTCTTCTTCTCACCTCCCCGGACGATGCTTCTT 1582
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1583 GACACAGGAAAGAGGATGTGCTGCTAGGGTCATCATGTCCTGGTTTATTGTGTTGTCAGTAGAATGAAATCAAA 1656
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1657 ATACATACTTCATAAATAATAAAATAACCCATAATAAGTAAACATTTACAATTTACTCACACCATTGAGGTTTC 1730
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1731 CTCCAGGTGTGAGCACAGCTGCAGACACACCTTGTCGCTTCAGTCAGGACACAGGACAGAGTAAAATGGGAAGA 1804
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1805 AACCACAGTCACTGCAGAAAGGGCCCCCATGGAAGAGGCCTGGCAGGGAGGCCAGCTGCCCCAGGGCCACCATA 1878
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1879 TTTAGAGATGACTTCCCCTTTCTAGGCAGGACTGGGATTTTAAAATTCTTTTTGTATTCATAGTTGTTCTGAAA 1952
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 1953 TTGCAGGATGATGAGACCCAGCACTGGTGAGTTATACTGTCTCTTTCTTCCCTATTAAATTCTGTGCCAAACAG 2026
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2027 CACCTTCATATATTTATCTCCTCTTCCTGGAGAGAATAAAAACAATGGAAAAATTGAACCATACAAACATACTT 2100
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2101 TAAATATGTGCTGTCAGAAGTAGCTACTAAAGGATTAATTCCACCAAAGTGAGGGAAGGTTTGAAAAGAAAAAC 2174
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2175 ATTGTATACCCATATTCAAAGCAGCATTATTCACGATAGCCAAGACAACACACACCAACACATGAATGAAGAAA 2248
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2249 ATGTGGTATATATCGACAACGGAATATCATTCAGCCTTAAGAAGGAAACCTGGTCACAGGCTGCAACAGGGATA 2322
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2323 AACCTGAAGGACACTGCTAAGTAAAATAAGCCAATCACAAAGAAAACCCAATACTGCACATTTCCATTTATATG 2396
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2397 AGGTGTCTAAACTGAAAGTAGACTAATGGCTGCTAGGGGCTCGGTGAGGGGGATGGATGAATGTTTGTTCAATG 2470
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2471 GGCATAGAGTTTCAGTGTTGCAAGATGAAAAGTTCTAGAGATCTGTTGCACAACTATGTATTTACAGTTAATAC 2544
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2545 TGTACTACTGTATACTTTAAAATAGTTAAGATACCAAATTTTACATAATGTAGTTTTTGGCCCAAGGAAAAGAC 2618
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2619 TAATTAGCCCTGTTACTAATTTAGGGAAAAAGTACATGAATTCATTAAAAATATATTAGTATGCGCTTACCTTA 2692
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2693 GATACAGAAAACTATGAGACAAAAAGAGAGATCCCTGCTACCCCAGCTATCACCCATGAACCAGGAAAATCAGC 2766
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2767 ACCTCCTGAAACTAGACAGAAAGGCTCACAGGCCCAGCCTTGACATGTTGAATCAGTCTGCATTTTGGCTGGAA 2840
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2841 CCCAGGTGGCTCCACTGCATGTAAAGCACCTTCCCAGATAGTGATGGAGGGAGATCCTAGGACAGTGACTCTGC 2914
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2915 TCCACGGGGAGAAGCCTCCAGTCCAGATGGGAGCAGCCAGAAGGGCCCAGGAGGGACATTTCCAAGAAGATAAA 2988
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 2989 ATTAACAGAATGTCCAAAGTGTCCAACGTCTTGAAAGAATCATACAAACAAAAGAGATATCAAACTTAAATTAA 3062
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 3063 TGAGAGTTAATAAAATAAACAAAAACAAATGCAAGTATTAACTCCAAGAAGAACCAATGTTGTACAGGCAGTGA 3136
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 3137 AAAGTAGTCCAGTTGACATATGAGAGGATTAGTCATGGTAAAAGAAACAAGAGATGGCTGAACTAAACATAATC 3210
Query 1099 -------------------------------------------------------------------------- 1098
Sbjct 3211 ACTATATAAATATACTGGGAAGAGTGAAAGAGAACAAGTACTCTTAACTGTTGCATCCACCATTGCGCTGTGCA 3284
Query 1099 ----------------------- 1098
Sbjct 3285 ACAATGGGTGCATCTGAAAAAAA 3307
