Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10887
- Subject:
- NR_104468.1
- Aligned Length:
- 2312
- Identities:
- 659
- Gaps:
- 1596
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTAGTGGGGGGAAGGTTCTAGAAAAGCGGCGGTCTCGGCTCCAGCGGCAGTAGCAGCGGCGCCGGTCCCGTGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGGAGCTCCTTTGCGGCCCAGTTTCTTGGCCATCGCCTGCTCTCCCCACAGCGCCAGGACGAGTCCCGTGCG 148
Query 1 ----------------------------------------------------------------------ATGG 4
||||
Sbjct 149 CGTCCGTCCGCGGAGGTCTTTCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGCGACTGAGTCCGCGATGG 222
Query 5 AGAGAGAAAAGGAACAGTTCCGTAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCACAGAAGAAAGTTTGAGG 78
||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 223 AGAGAGAAAAGGAACAGTTCCGAAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCACAGAAGAAAGTTTGAGA 296
Query 79 AACTACTACGAACAATGGGGAAAGCTTACAGACTGTGTGGTAATGAGGGATCCTGCAAGCAAAAGATCAAGAGG 152
||||||||.||.||||||||||||||.||||||||||||||.|||.||||||||||||||||||||||||||||
Sbjct 297 AACTACTATGAGCAATGGGGAAAGCTCACAGACTGTGTGGTTATGCGGGATCCTGCAAGCAAAAGATCAAGAGG 370
Query 153 ATTTGGTTTTGTAACTTTTTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGACCTCATTCAATTGATG 226
||||||.|||||||||||.|||||||||||.||||||||.|||||||||||||||||.||.|||||.|||||||
Sbjct 371 ATTTGGCTTTGTAACTTTCTCATCCATGGCCGAGGTTGACGCTGCCATGGCTGCAAGGCCCCATTCCATTGATG 444
Query 227 GGAGAGTAGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGCTCATGTAACTGTGAAG 300
|.||.|||||||||||||||||||||||||||||||||||.||||||||||||||.||.|||||.|||||||||
Sbjct 445 GCAGGGTAGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAGTCTGGAAAACCAGGAGCCCATGTGACTGTGAAG 518
Query 301 AAGCTGTTTGTTGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACTTTGAGGAATATGGAAA 374
||||||||||||||.||||||||.|||||||||||||||||.||||||||||||||||||||.||.||||||||
Sbjct 519 AAGCTGTTTGTTGGTGGAATTAAGGAAGATACTGAGGAACACCACCTTAGAGATTACTTTGAAGAGTATGGAAA 592
Query 375 AATTGATACCATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTTGATG 448
|||||||||.|||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AATTGATACTATTGAAATAATTACCGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTTGATG 666
Query 449 ACCATGATCCTGTGGATAAAATCGTATTGCAGAAATACCATACCATCAATGGTCATAATGCAGAAGTAAGAAAG 522
||||||||||||||||||||||.||.|||||.|||||.||.|||||.||||||||.|||||||||||.||||||
Sbjct 667 ACCATGATCCTGTGGATAAAATTGTCTTGCAAAAATATCACACCATAAATGGTCACAATGCAGAAGTTAGAAAG 740
Query 523 GCTTTGTCTAGACAAGAAATGCAGGAGGACC------------------------------------------- 553
||.|||||||||||||||||||||||.|.||
Sbjct 741 GCATTGTCTAGACAAGAAATGCAGGAAGTCCAAAGTTCTAGGAGTGGAAGAGGAGGAAACTTTGGTTTTGGGGA 814
Query 554 ---------TGGAGGTGGCAATTTTGGAGGTAGCCCCGGTTATGGAGGAGGA---------AGAGGAGGATATG 609
|||.||||||||||||||| || .|||..|||| ||.||.||||.||
Sbjct 815 TTCTCGTGGTGGCGGTGGCAATTTTGGA-----CC-------AGGACCAGGAAGCAACTTTAGGGGGGGATCTG 876
Query 610 GTGG---TGGA---GGACCTGGATATGGCAACCAGGGTGG-------GGGCTACGGAGGTGGTTATGACAACTA 670
.||| .||| ||||.|||||.||| ||.||| ||| ||.|||||.|| |.||
Sbjct 877 ATGGATACGGAAGTGGACGTGGATTTGG------GGATGGCTATAATGGG-TATGGAGGAGG-------ACCT- 935
Query 671 TGGAGGAGGAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTC 744
||||||||||||||||||||||.||||||||||||||||||||||||||||||.|||||||||||.||||
Sbjct 936 ----GGAGGAAATTATGGAAGTGGAAGTTACAATGATTTTGGAAATTATAACCAGCAGCCTTCTAACTATGGTC 1005
Query 745 CAA----------------------------------------------------------------------- 747
|||
Sbjct 1006 CAATGAAGAGTGGAAACTTTGGGGGTAGCAGGAACATGGGAGGACCATATGGTGGAGGGAACTATGGTCCTGGA 1079
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1080 GGAAGTGGAGGAAGTGGTGGCTATGGTGGAAGGAGCAGATATTAAGCTTCTTCCTACTTACCATGGCATTGATA 1153
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1154 TGAACCATGGACAAGTATATTCTGCTGCCACAAAGACTGTAAAGTGCTTCATTTCAACAGCTGAGGCAAGCCAA 1227
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1228 GTGATCATTAATAAAGCTTTTCTTGCTTCCTTCAGTGGTGTTGGTAGTAAAATGGAAGGTGTCTTGCTGCAGGT 1301
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1302 AACTAATGAAGAAGTGGTCAACCACAGAGTCTTCAAGAAATAAGAAATTCTGTACCATCTGAAAGTAGTTCTTG 1375
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1376 TTGGTGCCTTCATTTAAGAAGCACTTTTAAGAAAAGGGAATGTTTTCTGATTTAAAACTTCATTTAGTACAGGT 1449
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1450 TCTTAATAAAATTACAAAAATGCTGATTGTAAAGGGTAACATCAAATTAGCAAAGGATAATGTATTGTTTTAGG 1523
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1524 ATTTGTGAGTAGACAGATAAGAGCTCTATTTTAAATACAAGTTTTATAAAATAAATACTTTTGTATCCAAATTA 1597
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1598 CTTGGTGTAATGCTTACACATAAGTGTGAATCTTGTTCTATCAACATCAGTTGTCTACAAGATCGACACTATAA 1671
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1672 ATGCTAGACTAGTTTTGCACAGAACTATACATTTAGTTCTCATTCAATACTAATAGGAGAAAAAAGCATTAATA 1745
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1746 GGCATTATTTACTGTCTAATAAAATATACCTTACTATGAATTGTGCACTGCTACAACTTGATGCTGAACACTAA 1819
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1820 TGGTGGCATTTTGAAACCATGGATTTTAACCAGATAGTGTTTTGAGTTACCACTTTTGCAGAACACCAAAACAC 1893
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1894 TGATTTTTATTCCAATTGTGAATGGGTAGCAGTGGTTAAGGTACTGTGGTTTAAGAGTAATGGGAAATTGATTT 1967
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1968 AAAACAACCAGAGTTAACTTCATTTGCTTACGCCAATAAAGCAATATATACAGGTAAGTCAATGGCTAAAAAAT 2041
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2042 GTGAGCTCTTAACATCTTGTAAAGTGTATCAACAGTCATTCTAAATACTTGGCTTTTGGCTAGAAAAGCTAGCA 2115
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2116 AACCCATTAGGTAGTGTTGTGCATGCCCTCAGTCCCAGCACTTGGGAAGTTAAAGGCTATGTTCCAGACAAGGC 2189
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2190 TGCATGTGAGTCTCATACACATACCCGTCGCCATTAAGAGTTTGTTTTTGGACTTCAAAGCAAAATAAAGTCTC 2263
Query 748 ------------------ 747
Sbjct 2264 ACACAATTGTTTTTTAAA 2281
