Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10887
- Subject:
- XR_002956424.1
- Aligned Length:
- 1851
- Identities:
- 705
- Gaps:
- 1124
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAAAAGCGGCGGCAGCGGCTCTAGCGGCAGTAGCAGCAGCGCCGGGTCCCGTGCGGAGGTGCTCCTCGCAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGTTTCTCGAGCAGCGGCAGTTCTCACTACAGCGCCAGGACGAGTCCGGTTCGTGTTCGTCCGCGGAGATCTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGCGACTGAGTCCGCGATGGAGAAAACTTTAGAAACTGTT 222
Query 1 ---ATGG---------AGAGAGAAAAGGAACAGTTCCGTAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCAC 62
.||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTTTGGAGAGGAAAAAGAGAGAAAAGGAACAGTTCCGTAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCAC 296
Query 63 AGAAGAAAGTTTGAGGAACTACTACGAACAATGGGGAAAGCTTACAGACTGTGTGGTAATGAGGGATCCTGCAA 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGAAGAAAGTTTGAGGAACTACTACGAACAATGGGGAAAGCTTACAGACTGTGTGGTAATGAGGGATCCTGCAA 370
Query 137 GCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGA 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGA 444
Query 211 CCTCATTCAATTGATGGGAGAGTAGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGC 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCTCATTCAATTGATGGGAGAGTAGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGC 518
Query 285 TCATGTAACTGTGAAGAAGCTGTTTGTTGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCATGTAACTGTGAAGAAGCTGTTTGTTGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACT 592
Query 359 TTGAGGAATATGGAAAAATTGATACCATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGC 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTGAGGAATATGGAAAAATTGATACCATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGC 666
Query 433 TTTGTTACTTTTGATGACCATGATCCTGTGGATAAAATCGTATTGCAGAAATACCATACCATCAATGGTCATAA 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTTGTTACTTTTGATGACCATGATCCTGTGGATAAAATCGTATTGCAGAAATACCATACCATCAATGGTCATAA 740
Query 507 TGCAGAAGTAAGAAAGGCTTTGTCTAGACAAGAAATGCAGG--------------AGGACCTG---GAGGTGGC 563
||||||||||||||||||||||||||||||||||||||||| |||| .|| ||||.|||
Sbjct 741 TGCAGAAGTAAGAAAGGCTTTGTCTAGACAAGAAATGCAGGAAGTTCAGAGTTCTAGGA-GTGGAAGAGGAGGC 813
Query 564 AATTTTGG------------AGGTAGCCCCGG------TTATGGAGGAGGA---------------AGAGGAGG 604
||.||||| |.||.|...||| ||..|||..|||| ||||||||
Sbjct 814 AACTTTGGCTTTGGGGATTCACGTGGTGGCGGTGGAAATTTCGGACCAGGACCAGGAAGTAACTTTAGAGGAGG 887
Query 605 AT---ATGG---TGGTGGAGGACCTGGATATGGCAACCAGGGTGG-------GGGCTACGGAGGTGGTTATGAC 665
|| |||| |||..|.||||.|||||.||| ||.||| ||| ||.|||||.||
Sbjct 888 ATCTGATGGATATGGCAGTGGACGTGGATTTGG------GGATGGCTATAATGGG-TATGGAGGAGG------- 947
Query 666 AACTATGGAGGAGGAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTA 739
|.|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 ACCT-----GGAGGAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTA 1016
Query 740 CGGTCCAA------------------------------------------------------------------ 747
||||||||
Sbjct 1017 CGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAGGAAACTATGGTC 1090
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1091 CAGGAGGCAGTGGAGGAAGTGGGGGTTATGGTGGGAGGAGCCGATACTGAGCTTCTTCCTATTTGCCATGGCAT 1164
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1165 TGATATGAACCATGGACAAGTATATTCTGCTGCCACAAAGACTGTAAAGTGCTTCATTTCAACAGCTGAGGCAA 1238
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1239 GCCAAGTGATCATTAATAAAGCTTTTCTTGGTTCCTTCAGTGGTGTTGGTAGTAAAATGGAAGGTGTCTTGCTG 1312
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1313 CAGGTAACTAATGAAGAAGTGGTCAACCACAGAGTCTTCAAGAAATAAGAAATTCTGTACCATCTGAAAGTAGT 1386
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1387 TCTTGTTGGTGCCTTCATTTAAAAAGCACTCTTTAAAATAAAAGGGAAATGTTTTCTGATAAAACAAACATTTA 1460
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1461 GTTGAGGTTCTTGATATAAAACAATTACAAAATGAGTGTTGTTTGTAAAACAGTAACATCAAATTGGCTAGAGA 1534
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1535 GATAAATGTATCATGTTTTAAATTAGGTTTTGTGAGTAGACAGATTACAATTCTATTTTAAATATAAAGTTTAT 1608
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1609 AAAATAAATACTTTTTGTATCCAAATACTTGGTGTAATGTTTACACATAAAATGTGTGAATCTTGTTCTATAAA 1682
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1683 TATTTGGTTGTCTAAAAGATCACCATCCCCTAAATTTTTAAAAGCAGTTTCACAAAGCTATGCATATTTTAATA 1756
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1757 TTAACAGGTAAATGAGAAGAGCATTGTGGACATTATTGGCTGTCCCCAATAAAATGCTGTTCATTATGCACTGT 1830
Query 748 - 747
Sbjct 1831 A 1831
