Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10957
Subject:
XR_001779471.1
Aligned Length:
4954
Identities:
887
Gaps:
3951

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCAACAGGGTTCAATTTATTGCTTGGAGCTCTGGCAGCATAAAACTGTCTTCTTTGAATGGAAAATTTGACCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACTGCGATGAGGGGCTGCAGCCAGCGGTTTGCCGCGCGTGCCTGTTTGCCAAAGGAGCCGCCCCGGCGAGGATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCGGAGGGGAGCCGCTTCAAGCGGGGAGACCCGCAGCCCAGACACGCGCTCTGGGCGGCCTGGATGCGCAAGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCGGCCCCGCAGCCGCTGACAGCCGGCGGCAGCGAAGTTTGGCTGCTGAGCGGCTCGGCGCCGGGCCCCTGGA  296

Query    1  -----------------------------------ATGCCCGTGGGGGGCCTGTTGCCGCTCTTCAGCAGCCCC  39
                                               ||||||||||||||||||||||||||||||||.|||||.
Sbjct  297  CAGACTGTCAGCCGGCGGCTACAACCTCCGGAGCGATGCCCGTGGGGGGCCTGTTGCCGCTCTTCAGTAGCCCT  370

Query   40  GCGGGCGGCGTCCTGGGCGGGGGGCTCGGCGG------CGGCGGTGGCAGGAAGGGGTCGGGCCCCGCCGCCCT  107
            |.||||||||.|||||||.|.||.||.|||||      .|||||.||.|||||||||||.||||||||.|||.|
Sbjct  371  GGGGGCGGCGGCCTGGGCAGTGGCCTGGGCGGGGGGCTTGGCGGCGGGAGGAAGGGGTCTGGCCCCGCTGCCTT  444

Query  108  CCGCCTGACGGAGAAGTTCGTGCTGCTGCTGGTATTCAGCGCCTTCATCACGCTCTGCTTCGGGGCGATCTTCT  181
            ||||||.||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||||.|||||||
Sbjct  445  CCGCCTCACCGAGAAGTTCGTGCTGCTGCTGGTGTTCAGCGCCTTCATCACGCTCTGCTTCGGGGCAATCTTCT  518

Query  182  TCCTGCCAGACTCCTCCAAGCTGCTCAGCGGGGTCCTGTTCCACTCCAGCCCCGCCTTGCAGCCGGCCGCCGAC  255
            |||||||.||||||||||||||||||||||||||||||||||||||||.|||.||||||||||||.|.||.||.
Sbjct  519  TCCTGCCTGACTCCTCCAAGCTGCTCAGCGGGGTCCTGTTCCACTCCAACCCTGCCTTGCAGCCGCCGGCGGAG  592

Query  256  CACAAGCCCGGGCCCGGGGCGCGCGCCGAGGACGCGGCCGAGGGGCGAGCCCGGCGCCGCGAGGAGGGGGCACC  329
            |||||||||||||.|||||||||.||.|||||.||.|||||||||.|||.|||||.|||||||||.||.||.||
Sbjct  593  CACAAGCCCGGGCTCGGGGCGCGTGCGGAGGATGCCGCCGAGGGGAGAGTCCGGCACCGCGAGGAAGGCGCGCC  666

Query  330  CGGGGACCC-GGAGGCCGCCCTGGAGGACAACTTGGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAGGGAA  402
            .|||||||| ||| ||.|..|||||.||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct  667  TGGGGACCCTGGA-GCTGGACTGGAAGACAACTTAGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAGGGAA  739

Query  403  GCCAAGGAGACCCTGCAGAAGCTGCCCGAGGAGATCCAAAGAGACATCCTACTGGAGAAGAAGAAGGTGGCCCA  476
            ||||||||||||||||||||||||||.||||||||||||||||||||.||.|||||||||.|.|||||||||||
Sbjct  740  GCCAAGGAGACCCTGCAGAAGCTGCCGGAGGAGATCCAAAGAGACATTCTGCTGGAGAAGGAAAAGGTGGCCCA  813

Query  477  GGACCAGCTGCGTGACAAGGCGCCGTTCAGAGGCCTGCCCCCGGTGGACTTCGTGCCCCCAATCGGGGTGGAGA  550
            ||||||||||||||||||||..|.|||.||.|||.|||||..||||||||||.|||||||..|||||||.||||
Sbjct  814  GGACCAGCTGCGTGACAAGGATCTGTTTAGGGGCTTGCCCAAGGTGGACTTCCTGCCCCCCGTCGGGGTAGAGA  887

Query  551  GCCGGGAGCCCGCCGACGCCGCCATCCGCGAGAAAAGGGCAAAGATCAAAGAGGAAATTGAAGCCAGGAAGGGG  624
            .||||||||||||.||||||.|||||||.|||||.||||||||||||||||                       
Sbjct  888  ACCGGGAGCCCGCTGACGCCACCATCCGTGAGAAGAGGGCAAAGATCAAAG-----------------------  938

Query  625  CAAGCAAATTGCCCAGGGTCGAGCAGCTCCTGCGAGGTTGAAATCCAGATGATGAAACATGCTTGGAATAATTA  698
                                                          |||||||||..|||||||||||||||||
Sbjct  939  ----------------------------------------------AGATGATGACCCATGCTTGGAATAATTA  966

Query  699  TAAAGGTTATGCCTGGGGATTAAATGAACTCAAACCTATATCAAAAGGAGGCCATTCAAGCAGTTTGTTTGGTA  772
            ||||.|.|||||.|||||.||.||.|||||.||||||||||||||||.||||||||||||||||||||||||.|
Sbjct  967  TAAACGCTATGCGTGGGGCTTGAACGAACTGAAACCTATATCAAAAGAAGGCCATTCAAGCAGTTTGTTTGGCA  1040

Query  773  ACATCAAAGGAGCAACTATAGTAGATGCCCTGGATACACTTTTTATTATGGAAATGAA-ACATGAATTTGAAGA  845
            |||||||||||||.||.||||||||||||||||||||.|||||.|||||||..||||| || |||||||.||||
Sbjct 1041  ACATCAAAGGAGCTACAATAGTAGATGCCCTGGATACCCTTTTCATTATGGGCATGAAGAC-TGAATTTCAAGA  1113

Query  846  AGCAAAATCATGGGTTGAAGAAAATTTAGATTTTAATGTGAATGCTGAAATTTCTGTCTTTGAAGTAAATATAC  919
            |||.|||||.|||.||.||.||.||||||||||||||||||||||||||.|||||||.||||||||.||.||||
Sbjct 1114  AGCTAAATCGTGGATTAAAAAATATTTAGATTTTAATGTGAATGCTGAAGTTTCTGTTTTTGAAGTCAACATAC  1187

Query  920  GCTTTGTTGGTGGACTACTCTCAGCCTACTATCTGTCTGGAGAAGAGATTTT----TCGAAAGAAAGCAGTGGA  989
            ||||.||.||||||||.||.||||||||||||.||||.|||||.|||    |    |||         .|.|||
Sbjct 1188  GCTTCGTCGGTGGACTGCTGTCAGCCTACTATTTGTCCGGAGAGGAG----TGGGATCG---------GGCGGA  1248

Query  990  ACT-----TGGG---------------GTA---------AAATTGCTAC-CTGCATTT----------CA-TAC  1022
            |||     ||||               |||         ||.|||..|| ||||||||          || |..
Sbjct 1249  ACTGGCCCTGGGCCTCTGGAGGCAGCAGTATCCTGGCCGAATTTGGAACTCTGCATTTAGAGTTTATGCACTTG  1322

Query 1023  TCCC-----TCTGGAATACCTTGGGCA----TTGCTGAA-----TATGAAAA---------GGTGGA------T  1067
            ||||     ||.|| |.|||     ||    ||||.|||     ||||||||         .||.||      |
Sbjct 1323  TCCCACTTATCAGG-AGACC-----CAGTCTTTGCCGAAAAGGTTATGAAAATTCGAACAGTGTTGAACAAACT  1390

Query 1068  GTGCAA-------------TATCCCAAGGGCTATGGAGGCT--ACCATA-------------------------  1101
            |..|||             |||||.||   ||||     ||  |||..|                         
Sbjct 1391  GGACAAACCAGAAGGCCTTTATCCTAA---CTAT-----CTGAACCCCAGTAGTGGACAGTGGGGTCAACATCA  1456

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 1457  TGTGTCGGTTGGAGGACTTGGAGACAGCTTTTATGAATATTTGCTTAAGGCGTGGTTAATGTCTGACAAGACAG  1530

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 1531  ATCTCGAAGCCAAGAAGATGTATTTTGATGCTGTTCAGGCCATCGAGACTCACTTGATCCGCAAGTCAAGTGGG  1604

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 1605  GGACTAACGTACATCGCAGAGTGGAAGGGGGGCCTCCTGGAACACAAGATGGGCCACCTGACGTGCTTTGCAGG  1678

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 1679  AGGCATGTTTGCACTTGGGGCAGATGGAGCTCCGGAAGCCCGGGCCCAACACTACCTTGAACTCGGAGCTGAAA  1752

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 1753  TTGCCCGCACTTGTCATGAATCTTATAATCGTACATATGTGAAGTTGGGACCGGAAGCGTTTCGATTTGATGGC  1826

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 1827  GGTGTGGAAGCTATTGCCACGAGGCAAAATGAAAAGTATTACATCTTACGGCCCGAGGTCATCGAGACATACAT  1900

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 1901  GTACATGTGGCGACTGACTCACGACCCCAAGTACAGGACCTGGGCCTGGGAAGCCGTGGAGGCTCTAGAAAGTC  1974

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 1975  ACTGCAGAGTGAACGGAGGCTACTCAGGCTTACGGGATGTTTACATTGCCCGTGAGAGTTATGACGATGTCCAG  2048

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2049  CAAAGTTTCTTCCTGGCAGAGACACTGAAGTATTTGTACTTGATATTTTCCGATGATGACCTTCTTCCACTAGA  2122

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2123  ACACTGGATCTTCAACACCGAGGCTCATCCTTTCCCTATACTCCGTGAACAGAAGAAGGAAATTGATGGCAAAG  2196

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2197  AGAAATGAAAGACATTTTCTATTTTACTCTGCTTCGTTCCCTCACTGCATACCTTAATAATTCCTTTTCTGGTA  2270

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2271  ATCAGACATATGATGAACTCTTATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGT  2344

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2345  CTTTTATGTTTAGTGCCATAAGCCTAGGTGGACCTCAATTCCTTATTCAGCTAGTAGATCCACAGATTCTGCCT  2418

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2419  GTCTTTTTCTTTTTCTCAAGGAATCTATTGTTTCTGAAATTCATAAAGTTGCAAAATCATTTTCATAATAGAAC  2492

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2493  CGTCTACCAGTGACCTCTTGATTATGATTTGATTTGACTGCAAAACTTCTTCCTCCTCTATGAGGAGATGCTGT  2566

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2567  CTGCTTCGAGCTGTAATGTTTTGCCATGTTGCAAAAAGCCATAATAATAAATTAAGTATTTAAAAAAAAAAAGC  2640

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2641  TTTTTTTTCCTTTTCAAGTTCATGTTAATCTGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGC  2714

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2715  CTCTTAGCAGGTCTATCGTTATTTGATAGAATGTCTTCTAGAGTACTCCACTCTCATTGTGATTCAGATGAGAA  2788

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2789  AGCCATCCCAGAAGAGCTGGCGACACTGGCCTCATCTCTTCACAAGTGCAGTATCTTCTTATTGGGTGATTATG  2862

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2863  TTCATGTTTCCTCACTTTCATTTCGTTCTCTGCTTTTGCTCTAAATGCCCTGTGTCATCTCTGTATCACATACT  2936

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 2937  GCTTAATTTCTCCCATCACCCACGACACAGCAAGGGGAGCTCCTGAGTTATGCAGAATGCCAGGTTACCCAATT  3010

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3011  ACAATTTTGAAAGAGAAAAGACCTAACTTCTAACATGCCAGGTTTTCCTTTTTAATGAATCCATTCCAAAATCT  3084

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3085  CCTCTCTAAAAAGAGAGGGAGAATTCCATATGACTAGCTCATGGGTATACATTTCCTCTTTGGGTCTCTTTAAG  3158

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3159  CAAAGGATGCATTGCACTTGGTTCAGATCTGAAAAGGTCTCTTCCCAGGTGTAGCTCATCATTGAACTTCAGTT  3232

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3233  TATGAACATGAGCTTTTACCCAGTGAAAAAAGCATTTCTGATTTACCTACTCCTATTCAGCTAAAGGAGAAAGT  3306

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3307  AAAATCTAATTAACTCTTAAGGACACACTGTATTAAATGTGCTTACATTCCACATAAAGATCTTAACTTACAAA  3380

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3381  TAATTTATAGGGATGGATCCACTCCCTCATAATTTGATCTGCAACAGATCAAAATGATTATATGATTCTTCTAA  3454

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3455  ACCTTATCTTGAACTATGAATGATTTTCCCAAGGACAAATTTTGTGATAGCTTGTGTTACCACACCTGTTCTTT  3528

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3529  ATATGAAAGATCAGATATGATTCATATGTACTGAAAGACAAAGACAAGAACCACCTCAATTTCAACCTACTATG  3602

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3603  GTCAATAAACAACAAAAACAAATAATACAGATCCATGGATTAGGCTAAAGTATATATTTCTGTGCACTTACTTT  3676

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3677  TTTCAAAATGTCTAATTTTATCAATTTCTTATGGTACAACCTATTTTTTGAGACATTTGTTTTCTTAAATCTGA  3750

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3751  GTAGACAATAGTTTCACCTATTTCAGCTTTGGGGATGGTTTCAAAAGATGTTATTTTGAATCACTACCTTGTAT  3824

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3825  GCCCTGGTTGTCTCCAGTATAATACACTAGAACACATCAAAACAAAACAGTAAAATTAGTAAATGGAAAAGATC  3898

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3899  CCTCAGTATATCATTTTGACTATATTAACACATCTCTGCTACCCAGAGAAGCTTCTGCCTGTAATCTATTCAGT  3972

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 3973  CTCTGGAGGTTATGAACCCATGACATCATTTTGATGAAACTGAATAGAACAGTCTGCCTTACCTCTTCATTACA  4046

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 4047  ACTTGATTTGACTGTAAAACTTTTCCCTCCGTGAGGAAGAACACGTGAACAACAGATCCTTCCTTCCCTAGAGC  4120

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 4121  TCAGAGGTAAAATGTTAAAATTTGCTGCCAAAATTTGGTCACCTGTATTTTTATTATAATTTTCACTGCCCTTA  4194

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 4195  GATTAGCTATTTAATTCATTTTCTTTGCATTTCAATTTGAAGGAGCATCCACAGCTGGTGATTATTTCTGCAGC  4268

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 4269  AGGAGGGGTTTCAAAGGCATGCGCTGTGTACCTGCTACACTGTAATGCAGCTTTTATGTTCCACTATAAGCAGG  4342

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 4343  GAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAAAACCAGATCTCAGAACACCAAAA  4416

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 4417  ACTTAAACGAGATAAGAGATTAATTTTATAGAAATGTAACTGATTAAGCTTATGTTTTGTGTTAATTTTAAACA  4490

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 4491  ACGGAAGTCTCCAAATACATACCAACGCATTCATTTTCAACAAAGTTGATTTACATGTATAATCCACACCCTTA  4564

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 4565  AAGATGAACAGTTAGAGTAGCACCCAGTTTTGTGTTTACAAAACCTGTTTTGATATACTATATTATACATAGAA  4638

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 4639  GTTGTATGCCAATTTATAGAACTCAGTGACTTCTCTATTATGTGTATCATCCATTTTTTACATTGATTGTTTTT  4712

Query 1102  --------------------------------------------------------------------------  1101
                                                                                      
Sbjct 4713  GATTTGTTCATAAGAGCATTCTGTCATTTCCAACTTTATATAAATCTCTGATGTTATGGAAAACATAATAGATT  4786

Query 1102  ----------------------------------------------------------------------  1101
                                                                                  
Sbjct 4787  GACACATAATTTTTAAAAATTATATTTGTAAAATTTCTCTATTGTGAATAAAGTCTTTTAATATACCTCC  4856

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