Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11109
- Subject:
- NR_161460.1
- Aligned Length:
- 5681
- Identities:
- 1340
- Gaps:
- 4338
Alignment
Query 1 ----------------------------------------------------------------ATGAGGCGAC 10
||||||||||
Sbjct 1 GCACTGAGCCTAAGCAGCCGGTGATGGCGGCAGCGGCTGTGGTGGCTGCGGCGGGTCCGGGCCCATGAGGCGAC 74
Query 11 GAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTT 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTT 148
Query 85 GACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCAGTTAAATGAAAG 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCAGTTAAATGAAAG 222
Query 159 CATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTA 296
Query 233 GTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTAT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTAT 370
Query 307 GGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAA 380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAA- 443
Query 381 GGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGC 454
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 ---------AGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGC 508
Query 455 ATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 ATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGT 582
Query 529 GGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCT---------------- 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTGGCCTTTTCTAACAAA 656
Query 587 -------------------------------------------------------------------------- 586
Sbjct 657 GAAGCTGCATTTAAGAGCCTTAGGGATGAAGTGCCCTTTTTTGGAGGAGGCTCACTGAGCCGTGTTGGAGGCTG 730
Query 587 -------------------------------------------------------------------------- 586
Sbjct 731 TGTTTGTGGTCGTGCTGGCTGTGAAACTGCCTCAGTCCTCTAGGACACACCCTCTCCATCCTGGAGTAATCTGC 804
Query 587 -------------------------------------------------------------------------- 586
Sbjct 805 AGGATTGCAACATTGTTATGCAGCCAGTATTGCAGTGCCTTGTGCTTTTCGAATCCAGACAGGGTTGATTCAGC 878
Query 587 ---------------GCTTTTACTTGGCAGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATC 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 CCTTTATTCTTTTGAGCTTTTACTTGGCAGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATC 952
Query 646 TACAGAGACCTGAAGCCGGAGAATATCATGCTTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TACAGAGACCTGAAGCCGGAGAATATCATGCTTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATG 1026
Query 720 CAAAGAATCTATTCATGATGGAACAGTCACACACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CAAAGAATCTATTCATGATGGAACAGTCACACACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCT 1100
Query 794 TGATGAGAAGTGGCCACAATCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 TGATGAGAAGTGGCCACAATCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGA 1174
Query 868 GCACCCCCATTCACTGGGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCC 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 GCACCCCCATTCACTGGGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCC 1248
Query 942 CTACCTCACACAAGAAGCCAGAGATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 CTACCTCACACAAGAAGCCAGAGATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTG 1322
Query 1016 GTCCTGGGGACGCTGGAGAAGTTCAAGCTCATCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGA 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GTCCTGGGGACGCTGGAGAAGTTCAAGCTCATCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGA 1396
Query 1090 AAGGTGGAGCCCCCCTTTAAACCTCTGTTGCAATCTGAAGAGGATGTAAGTCAGTTTGATTCCAAGTTTACACG 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 AAGGTGGAGCCCCCCTTTAAACCTCTGTTGCAATCTGAAGAGGATGTAAGTCAGTTTGATTCCAAGTTTACACG 1470
Query 1164 TCAGACACCTGTCGACAGCCCAGATGACTCAACTCTCAGTGAAAGTGCCAATCAGGTCTTTCTGGGTTTTACAT 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 TCAGACACCTGTCGACAGCCCAGATGACTCAACTCTCAGTGAAAGTGCCAATCAGGTCTTTCTGGGTTTTACAT 1544
Query 1238 ATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAAAATCCGATCACCTCGAAGA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 ATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAAAATCCGATCACCTCGAAGA 1618
Query 1312 TTTATTGGCAGCCCACGAACACCTGTCAG------------TACTGCT-----------------ATGTGC--- 1353
||||||||||||||||||||||||||||| |.||.|| |.||||
Sbjct 1619 TTTATTGGCAGCCCACGAACACCTGTCAGCCCAGTCAAATTTTCTCCTGGGGATTTCTGGGGAAGAGGTGCTTC 1692
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1693 GGCCAGCACAGCAAATCCTCAGACACCTGTGGAATACCCAATGGAAACAAGTGGCATAGAGCAGATGGATGTGA 1766
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1767 CAATGAGTGGGGAAGCATCGGCACCACTTCCAATACGACAGCCGAACTCTGGGCCATACAAAAAACAAGCTTTT 1840
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1841 CCCATGATCTCCAAACGGCCAGAGCACCTGCGTATGAATCTATGACAGAGCAATGCTTTTAATGAATTTAAGGC 1914
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1915 AAAAAAGGTGGAGAGGGAGATGTGTGAGCATCCTGCAAGGTGAAACGACTCAAAATGACAGTTTCAGAGAGTCA 1988
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1989 ATGTCATTACATAGAACACTTCAGACACAGGAAAAATAAACGTGGATTTTAAAAAATCAATCAATGGTGCAAAA 2062
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2063 AAAAACTTAAAGCAAAATAGTATTGCTGAACTCTTAGGCACATCAATTAATTGATTCCTCGCGACATCTTCTCA 2136
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2137 ACCTTATCAAGGATTTTCATGTTGATGACTCGAAACTGACAGTATTAAGGGTAGGATGTTGCTTCTGAATCACT 2210
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2211 GTTGAGTTCTGATTGTGTTGAAGAAGGGTTATCCTTTCATTAGGCAAAGTACAAAATTGCCTATAATACTTGCA 2284
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2285 ACTAAGGACAAATTAGCATGCAAGCTTGGTCAAACTTTTTCCAGCAAAATGGAAGCAAAGACAAAAGAAACTTA 2358
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2359 CCAATTGATGTTTTACGTGCAAACAACCTGAATCTTTTTTTTATATAAATATATATTTTTCAAATAGATTTTTG 2432
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2433 ATTCAGCTCATTATGAAAAACATCCCAAACTTTAAAATGCGAAATTATTGGTTGGTGTGAAGAAAGCCAGACAA 2506
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2507 CTTCTGTTTCTTCTCTTGGTGAAATAATAAAATGCAAATGAATCATTGTTAACCACAGCTGTGGCTCGTTTGAG 2580
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2581 GGATTGGGGTGGACCTGGGGTTTATTTTCAGTAACCCAGCTGCAATACCTGTCTGTAATATGAGAAAAAAAAAA 2654
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2655 TGAATCTATTTAATCATTTCTACTTGCAGTACTGCTATGTGCTAAGCTTAACTGGAAGCCTTGGAATGGGCATA 2728
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2729 AGTTGTATGTCCTACATTTCATCATTGTCCCGGGCCTGCATTGCACTGGAAAAAAAAATCGCCACCTGTTCTTA 2802
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2803 CACCAGTATTTGGTTCAAGACACCAAATGTCTTCAGCCCATGGCTGAAGAACAACAGAAGAGAGTCAGGATAAA 2876
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2877 AAATACATACTGTGGTCGGCAAGGTGAGGGAGATAGGGATATCCAGGGGAAGAGGGTGTTGCTGTGGCCCACTC 2950
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2951 TCTGTCTAATCTCTTTACAGCAAATTGGTAAGATTTTCAGTTTTACTTCTTTCTACTGTTTCTGCTGTCTACCT 3024
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3025 TCCTTATATTTTTTTCCTCAACAGTTTTAAAAAGAAAAAAAGGTCTATTTTTTTTTCTCCTATACTTGGGCTAC 3098
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3099 ATTTTTTGATTGTAAAAATATTTGATGGCCTTTTGATGAATGTCTTCCACAGTAAAGAAAACTTAGTGGCTTAA 3172
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3173 TTTAGGAAACATGTTAACAGGACACTATGTTTTTGAAATTGTAACAAAATCTACATAAATGATTTACAGGTTAA 3246
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3247 AAGAATAAAAATAAAGGTAACTTTACCTTTCTTAAATATTTCCTGCCTTAAAGAGAGCATTTCCATGACTTTAG 3320
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3321 CTGGTGAAAGGGTTTAATATCTGCAGAGCTTTATAAAAATATATTTCAGTGCATACTGGTATAATAGATGATCA 3394
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3395 TGCAGTTGCAGTTGAGTTGTATCACCTTTTTTGTTTGTCTTTTATAATGTCTTCAGTCTGAGTGTGCAAAGTCA 3468
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3469 ATTTGTAATATTTTGCAACCCTAGGATTTTTTTAAATAGATGCTGCTTGCTATGTTTTCAAACCTTTTTGAGCC 3542
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3543 ATAGGATCCAAGCCATAAAATTCTTTATGCATGTTGAATTCAGTCAGAAAAGAGCAAGGCTTTGCTTTTTGAAA 3616
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3617 TTGCAACTCAAATGAGATGGGATGAAATCCTATGACAGTAAGCAAAAACAGAACCATGAAAAATGATTGGACAT 3690
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3691 ACACCTTTTCAATTGTGGCAATAATTGAAAGAATCGATAAAAGTTCATCTTTGGACAGAAAGCCTTTAAAAAAA 3764
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3765 AAATCACTCCCTCTTCCCCCTCCTCCCTTATTGCAGCAGCCTACTGAGAACTTTGACTGTTGCTGGTAAATTAG 3838
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3839 AAGCTACAATAATAATTAAGGGCAGAAATTATACTTAAAAAGTGCAGATCCTTGTTCTTTGACAATTTGTGATG 3912
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3913 TCTGAAAAAACAGAACCCGAAAAGCTATGGTGATATGTACAGGCATTATTTCAGACTGTAAATGGCTTGTGATA 3986
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3987 CTCTTGATACTTGTTTTCAAATATGTTTACTAACTGTAGTGTTGACTGCCTGACCAAATTCCAGTGAAACTTAT 4060
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4061 ACACCAAAATATTCTTCCTAGGTCCTATTTGCTAGTAACATGAGCACTGTGATTGGCTGGCTATAACCACCCCA 4134
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4135 GTTAAACCATTTTCATAATTAGTAGTGCCAGCAATAGTGGCAAACACTGCAACTTTTCTGCATAAAAAGCATTA 4208
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4209 ATTGCACAGCTACCATCCACACAAATACATAGTTTTTCTGACTTCACATTTATTAAGTGAAATTTATTTCCCAT 4282
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4283 GCTGTGGAAAGTTTATTGAGAACTTGTTTCATAAATGGATATCCCTACTATGACTGTGAAAACATGTCAAGTGT 4356
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4357 CACATTAGTGTCACAGACAGAAAGCACACACCTATGCAATATGGCTTATCTATATTTATTTGTAAAAATCCAAG 4430
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4431 CATAGTTTAAAATATGATGTCGATATTACTAGTCTTGAGTTTCTAAGAGGGTTCTTTATGTTATACCAGGTAAG 4504
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4505 TGTATAAAAGAGATTAAGTGCTTTTTTTTCATCACTTGATTATTTTCTTTAAAATCAGCTATTACAGGATATTT 4578
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4579 TTTTATTTTATACATGCTGTTTTTTAATTAAAATATAATCACTGAAGTTTACTAATTTGATTTTATAAGGTTTG 4652
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4653 TAGCATTACAGAATAACTAAACTGGGATTTATAAACCAGCTGTGATTAACAATGTAAAGTATTAATTATTGAAC 4726
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4727 TTTGAACCAGATTTTTAGGAAAATTATGTTCTTTTTCCCCCTTTATGGTCTTAACTAATTTGAATCCTTCAAGA 4800
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4801 AGGATTTTTCCATACTATTTTTTAAGATAGAAGATAATTTGTGGGCAGGGGTGGAGGATGCATGTATGATACTC 4874
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4875 CATAAATTCAACATTCTTTACTATAGGTAATGAATGATTATAAACAAGATGCATCTTAGATAGTATTAATATAC 4948
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4949 TGAGCCTTGGATTATATATTTAATATAGGACCTATTTTGAATATTCAGTTAATCATATGGTTCCTAGCTTACAA 5022
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5023 GGGCTAGATCTAAGATTATTCCCATGAGAAATGTTGAATTTATGAAGAATAGATTTTAAGGCTTTGAAAATGGT 5096
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5097 TAATTTCTCAAAAACATCAATGTCCAAACATCTACCTTTTTTCATAGGAGTAGACACTAGCAAGCTGGACAAAC 5170
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5171 TATCACAAAAGTATTTGTCACACATAACCTGTGGTCTGTTGCTGATTAATACAGTACTTTTTCTTGTGTGATTC 5244
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5245 TTAACATTATAGCACAAGTATTATCTCAGTGGATTATCCGGAATAACATCTGAAAGATGGGTTCATCTATGTTT 5318
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5319 GTGTTTGCTCTTTAAACTATTGTTTCTCCTATCCCAAGTTCGCTTTGCATCTATCAGTAAATAAAATTCTTCAG 5392
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5393 CTGCCTTATTAGGAGTGCTATGAGGGTAACACCTGTTCTGCTTTTCATCTTGTATTTAGTTGACTGTATTATTT 5466
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5467 GATTTCGGATTGAATGAATGTAAATAGAAATTAAATGCAAATTTGAATGAACATAAATAGAAGTGATTTATTTT 5540
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5541 TTTATTATCTTAAAGATAGGAAGGAATTAGTATACGTATCAGGTGTATAAATGGTTTAAATTTATTTTAACATG 5614
Query 1354 --------------------------------------------------------- 1353
Sbjct 5615 TCAGATGTGTTCAAGTTGTCATATAAATAAACTATGTATGTAAGGAATGGGTTAAAA 5671
