Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11214
- Subject:
- NR_047603.1
- Aligned Length:
- 6726
- Identities:
- 351
- Gaps:
- 6332
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGTAAAAGCAACCAGACGCAAAGTCTTTGGTCCGCACT 253
|||||||||||||||||||||||||||||||||||||.| ..|||.| ||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGAT----------------GGAGTTT--------CACT 1234
Query 254 ----TTGCTCTACCAAGGC-----------CCCGCGTTCCTTACCGCCCAGCCAGTATTTATTTTGGCTCTG-- 310
||||.|| ||| ...|||.| ||.|||.|.|.||.| .|||||
Sbjct 1235 CTTGTTGCCCT-----GGCTGGAGTGGAATAGTGCGGT-CTCACCTCACTGCAA------------CCTCTGTG 1290
Query 311 --CTCCATGGCCAAGGGGTCGGAAAAGTGTTTCT--TGCCTTTGCTGTCCC-CGTA-CTCTGGAATAC------ 372
|| |||.|| |||||.|||| |||||..|| .|||| .||| || .|||.|||
Sbjct 1291 TTCT----------GGGTTC----AAGTGATTCTCCTGCCTCAGC-CTCCCAAGTAGCT-GGGATTACAGGCTG 1348
Query 373 TTCGCCCCTTGCTCCAGACTCCCTTCTACTCT---------GAGGAAAAAAAAAATCGGAC-GCTTTGGGACCG 436
||||| ||||.| ||.|| |.||.||| .|||||||....|.||.||| .||||.| ||
Sbjct 1349 TTCGC----TGCTAC-GAATC---TTTAATCTTAAAAGCTGAAGGAAAAGTGGAGTCTGACTTCTTTTG--CC- 1411
Query 437 GGCTAAACCGGGTCTAC----ACCACATGCCTG-----TTACTT------------------------------ 471
||...|||| || |||.|.|| .|| ||| ||
Sbjct 1412 -----AATTAGGTC-ACTTCAACCTCTTG-TTGGAAGATTA-TTCAAAAGCATTATCTGCATATCAGAGATATT 1477
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1478 ACAGTTTACAGGCTGACTACTGGAAGAATGCTGCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAAT 1551
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1552 GCATTTCATTGGGCAATTAAAGCATTTCAAGATGTCCTTTATGTTGACCCCAGCTTTTGTCGAGCCAAGGAAAT 1625
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1626 TCATTTACGACTTGGGCTCATGTTCAAAGTGAACACAGACTACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCT 1699
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1700 TGATTGACTGTAATCCATGTACTTTGTCCAATGCTGAAATTCAATTTCATATTGCCCATTTGTATGAAACCCAG 1773
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1774 AGGAAGTATCATTCTGCAAAGGAGGCATATGAACAACTTTTGCAGACAGAAAACCTTCCTGCACAAGTAAAAGC 1847
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1848 AACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGCCACAAAGGAAAGCT 1921
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1922 ATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGTATTTTCTTGGAAGG 1995
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1996 TGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGATAAATCAGAAGCAAG 2069
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2070 TGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGCTTTACAGGCATATA 2143
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2144 TTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCTATGAATCCTGCAAT 2217
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2218 CAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAATACCTCTACGCTTGC 2291
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2292 TGCAAGAATTAAATTTCTACAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCATCCAGTAC 2365
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2366 AGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAGAGATAAT 2439
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2440 TTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAATGAGACACAA 2513
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2514 AGAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGCCTACAAACTCTG 2587
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2588 TCTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTTCGCCCTGCTTGT 2661
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2662 GTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAAAATTCTAGGAAG 2735
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2736 TACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGCCTTACCTGCAGC 2809
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2810 AAAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGGAGAAAACAGCTA 2883
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2884 TCTAACTCCGCTCAGGGGCTTCATAAAAGTCAGAGTTCATGTTTGTCAGGACCTAATGAAGAACAACCTCTGTT 2957
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2958 TTCCACTGGGTCAGCCCAGTATCACCAGGCAACTAGCACTGGTATTAAGAAGGCGAATGAACATCTCACTCTGC 3031
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3032 CTAGTAATTCAGTACCACAGGGGGATGCTGACAGTCACCTCTCCTGTCATACTGCTACCTCAGGTGGACAACAA 3105
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3106 GGCATTATGTTTACCAAAGAGAGCAAGCCTTCAAAAAATAGATCCTTGGTGCCTGAAACAAGCAGGCATACTGG 3179
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3180 AGACACATCTAATGGCTGTGCTGATGTCAAGGGACTTTCTAATCATGTTCATCAGTTGATAGCAGATGCTGTTT 3253
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3254 CCAGTCCTAACCATGGAGATTCACCAAATTTATTAATTGCAGACAATCCTCAGCTCTCTGCTTTGTTGATTGGA 3327
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3328 AAAGCCAATGGCAATGTGGGTACTGGAACCTGTGACAAAGTGAATAATATTCACCCAGCTGTTCATACAAAGAC 3401
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3402 TGATCATTCTGTTGCCTCTTCACCCTCTTCAGCCATTTCCACAGCAACACCTTCTCCTAAATCCACTGAGCAGA 3475
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3476 GAAGCATAAACAGTGTTACCAGCCTTAACAGTCCTCACAGTGGATTACACACAGTCAATGGAGAGGGGCTGGGG 3549
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3550 AAGTCACAGAGCTCTACAAAAGTAGACCTGCCTTTAGCTAGCCACAGATCTACTTCTCAGATCTTACCATCAAT 3623
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3624 GTCAGTGTCTATATGCCCCAGTTCAACAGAAGTTCTGAAAGCATGCAGGAATCCAGGTAAAAATGGCTTGTCTA 3697
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3698 ATAGCTGCATTTTGTTAGATAAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGAC 3771
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3772 AAGTTGAATCCACCCACACCTAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATT 3845
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3846 TTGTACAAATCCAAAAAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTT 3919
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3920 TCTCTACCAAAACTTTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCA 3993
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3994 GATGAAAACTGGGATCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGC 4067
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4068 CAAATACGCACAATACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACA 4141
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4142 AAGATCATTCAGATAACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATA 4215
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4216 AAATTTGGGACCAACATTGACCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCC 4289
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4290 TGCTTTTGCGCGTGTGGTGTCAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAG 4363
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4364 TACAACTGTATATGAAAGTTCCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAAC 4437
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4438 ATAAATATTGGTCCAGGAGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTG 4511
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4512 TGAAAAAAATAATTTGAATTTTTTAATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATGAAGCAAATGTCC 4585
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4586 CTGTGTATAGATTTATTCAGCGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCATTGGGTTCAAGCT 4659
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4660 GTTGGCTGGTGCAATAACATTGCCTGGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATTGGCAGTGGAACG 4733
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4734 GTATGAATGGAACAAATTGAAAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATGGCACGAA 4807
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4808 ATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAG 4881
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4882 ACATTGAGAGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCA 4955
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4956 TTACTGTAGCATTTGTGAGGTGGAGGTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATACTCAAAAAACCT 5029
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5030 ACATAGTACATTGCCATGATTGTGCACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTGCTCGAACAGTAC 5103
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5104 AAAATGGAGGACCTAATCCAAGTTTATGATCAATTTACACTAGCTCTTTCATTATCATCCTCATCTTGATATAG 5177
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5178 TTCCATGAATATTAAATGAGATTATTTCTGCTCTTCAGGAAATTTCTGCACCACTGGTTTTGTAGCTGTTTCAT 5251
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5252 AAAACTGTTGACTAAAAGCTATGTCTATGCAACCTTCCAAGAATAGTATGTCAAGCAACTGGACACAGTGCTGC 5325
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5326 CTCTGCTTCAGGACTTAACATGCTGATCCAGCTGTACTTCAGAAAAATAATATTAATCATATGTTTTGTGTACG 5399
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5400 TATGACAAACTGTCAAAGTGACACAGAATACTGATTTGAAGATAGCCTTTTTTATGTTTCTCTATTTCTGGGCT 5473
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5474 GATGAATTAATATTCATTTGTATTTTAACCCTGCAGAATTTTCCTTAGTTAAAAACACTTTCCTAGCTGGTCAT 5547
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5548 TTCTTCATAAGATAGCAAATTTAAATCTCTCCTCGATCAGCTTTTAAAAAATGTGTACTATTATCTGAGGAAGT 5621
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5622 TTTTTACTGCTTTATGTTTTTGTGTGTTTTGAGGCCATGATGATTACATTTGTGGTTCCAAAATAATTTTTTTA 5695
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5696 AATATTAATAGCCCATATACAAAGATAATGGATTGCACATAGACAAAGAAATAAACTTCAGATTTGTGATTTTT 5769
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5770 GTTTCTAAACTTGATACAGATTTACACTATTTATAAATACGTATTTATTGCCTGAAAATATTTGTGAATGGAAT 5843
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5844 GTTGTTTTTTTCCAGACGTAACTGCCATTAAATACTAAGGAGTTCTGTAGTTTTAAACACTACTCCTATTACAT 5917
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5918 TTTATATGTGTAGATAAAACTGCTTAGTATTATACAGAAATTTTTATTAAAATTGTTAAATGTTTAAAGGGTTT 5991
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5992 CCCAATGTTTGAGTTTAAAAAAGACTTTCTGAAAAAATCCACTTTTTGTTCATTTTCAAACCTAATGATTATAT 6065
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6066 GTATTTTATATGTGTGTGTATGTGTACACACATGTATAATATATACAGAAACCTCGATATATAATTGTATAGAT 6139
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6140 TTTAAAAGTTTTATTTTTTACATCTATGGTAGTTTTTGAGGTGCCTATTATAAAGTATTACGGAAGTTTGCTGT 6213
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6214 TTTTAAAGTAAATGTCTTTTAGTGTGATTTATTAAGTTGTAGTCACCATAGTGATAGCCCATAAATAATTGCTG 6287
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6288 GAAAATTGTATTTTATAACAGTAGAAAACATATAGTCAGTGAAGTAAATATTTTAAAGGAAACATTATATAGAT 6361
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6362 TTGATAAATGTTGTTTATAATTAAGAGTTTCTTATGGAAAAGAGATTCAGAATGATAACCTCTTTTAGAGAACA 6435
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6436 AATAAGTGACTTATTTTTTTAAAGCTAGATGACTTTGAAATGCTATACTGTCCTGCTTGTACAACATGGTTTGG 6509
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6510 GGTGAAGGGGAGGAAAGTATTAAAAAATCTATATCGCTAGTAAATTGTAATAAGTTCTATTAAAACTTGTATTT 6583
Query 472 ------------------------------------------------------------------ 471
Sbjct 6584 CATATGAAAAATTTGCTAATTTAATATTAACTCATTTGATAATAATACTTGTCTTTTCTACCTCTC 6649
