Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11236
- Subject:
- XR_001784663.1
- Aligned Length:
- 3769
- Identities:
- 358
- Gaps:
- 3384
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGTGTTTTGGAGGAGTTGTTGTGGTTTATCAAGGGAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CATCATCAGCTGGCCTCTAAATCAGCTTTTCCTGATTTTTCTGGAAAATAATGGAGAGATAATTAAGTACAATG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCCTGTGAGTTTCCCAAAGTTAGAGAATCTATTTTGCTACTTGCTATTGTATTCCTAGGTCCAGAACATAGCCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCACATGGTATGTACTCAGTATATATTGTTTACTGGAACAATAGATACCAAAGAGTCAAGTAGGTACCTTGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATGTGATGACAGCCCCAAGTTCCTCCTGTGTGTCCTCGTCTAGAACAAGTGAGGCTCTGTCTAATGCTGGGTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGAGAACTCCAGAAGACAAGCTGAGTTCTGGGCCATACTACAACTCCTTCTTTAGAGTACTTGGGGTGATGGCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAGTAGGTAAAGAGGGCTTGTTGTACAAGTATGAGACCTGAGTTCAGTCCCCAGCAGTCACATAAATTCTGTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGGACTGGAGAGGTGGCTTAGCAGTTAAGAGCATCTGTTGCTCTTGTTGGGCATCTGTTACTCTAGTTCCAGTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCATCTGCTGTCCTTGGGCACTGCATGTACATGGTGTATAGACACATGCAGGCAAAACACCCATACACATAAAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTTAAAAATGCTGGGTGTGATTGCATGTATCTCTAACCCCAGTGCTATAATGGGAGGGTGGACATAGGATCTTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGTGTTTTGCTGGCTACTAGTTTAGCCTAAACAAGCTCTAGCCTAAACAGAGACCCTGTTTCAAGGGAAAGGTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGAAGTGATAGAGCAGGTATCCTCTGGGTTCCATGGGCTCAGGTACATACATGTGCACGCACAACACACTTACA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CACAAAATCAGTAAAATCTAGGGCACTCAGTGTGACTGACATCATCTTGGACCTACCAGACCCTAGATTGCTTA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCCATTCTAGAACGGGTTGACAGTGTATTTAGTCTGTCTCAAGGTAAATCCTCAGAAATTCTAAACATCCATAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AATAGCTTGAGCCCAGCCCCAAAAATGGGAAAGGGGGGCTTTTAAAGCACACCATAAAAGATTGAGAAGTTAGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAGGCAGTGGTGGCACACACCTTTAGCCCAAGCAGTTGGGCCAGCCTGGACTACAGAGTGCCAGGACAGCCAGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCTACACAGAGAAACCCTATCTTGGAAAACAAAACAAAGATTGAGAAGTTATTAATTAGGAGTGAAAAAGTTAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAGAAACCTAATAGAAACAGGGGCTGGAAATCTGGCTCTGTGGTTGAGAGCACTTGTTCCAGTCTCCACAGGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GACTAACAACCATCTGTAACTAGTTCCAGGAAGACTAACAACCATCTGTAACTAGTTCCAGGGGATCAGTGCTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCTTATTGTCTCTGTAGGTCCTAGATGGCACTTGTTGCACAGATATCCGTGCAGGCAAAAGAAAAAAGAAAAAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAGAAGAAAGAGGAAAGGAAAGTCAGTTATCCGTATTGCAGTTGTCACCTGTGTGAAGATAGAATGGATCCACA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AATGCTAAAGAATTGTCCTCAAAGGGAGTGAGAATCTGGGATGCCAATGGATCCCGAGATTTTCTGGACAGCTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGGATTTTCTGCCCGACAGGAAGGGGACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGAGCAGAGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACAAAGATATGGATTCAGATTACTCGGGACAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCCCCTGATGGCACTGCCTCCTTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCATGCCCTCTGTCAGTTCTATGTGGTGAATGGGGAACTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GTCTGGGCGTGCCCTTCAACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATCACAGGCCTGCAG 1998
Query 1 ------------------------------------------------------------------ATGCGTTT 8
| ||
Sbjct 1999 CCAGGTGATTTTGTCCACACTTTGGGAGATGCACATATTTACCTGAATCATATAGAGCCGCTGAAAA-----TT 2067
Query 9 CA--TACAG--------AAGTACCT--------GCTTCA-----------------GAGAC-----ATGA---- 38
|| ||||| ||| |||| || ||| ||||| ||||
Sbjct 2068 CAGCTACAGCGAGAACCAAG-ACCTTTCCCAAAGC-TCAAAATCCTTCGAAAAGTTGAGACAATCGATGATTTC 2139
Query 39 ------GAAGA--TTCATACT----GGTGAAA---------AACCATT----------TCGCT----------- 70
||||| ||||.|.| |||..|| |||.||| |.|||
Sbjct 2140 AAAGTTGAAGACTTTCAGATTGAAGGGTATAATCCACATCCAACGATTAAAATGGAAATGGCTGTTTAGAGTGC 2213
Query 71 -----GTGATG----------------------------AATGTGGTGATGAGACAAACCATGCTTCTGCCACA 111
|||||| |||..|||||.|||||||||||.||.||||||||.
Sbjct 2214 TTTCAGTGATGCTATGAATATCACCGTTTTTTTTTTTTTAATTAGGTGACGAGACAAACCACGCCTCTGCCACG 2287
Query 112 TCAACA-CAGGAC-TTTCTGGATCAAGTGACTTCTCAGAAGAAAGCTGAGGCCCAGCCTGTCCACCAAGCTTAC 183
|||||| || ||| |||.||||||||||.|||||||||||||||||||||||.||||||||||||||.||||||
Sbjct 2288 TCAACAGCA-GACTTTTTTGGATCAAGTCACTTCTCAGAAGAAAGCTGAGGCACAGCCTGTCCACCAGGCTTAC 2360
Query 184 CAAATGAGCTCCTTTGAACAGCCCTTCCGTGCTCCCTATCATGGATCAAGAGCTGGAATAGCTACTCAATTTAG 257
|||||||||||||||||.||||.||||.|||||||.|||||||||||.||||||||||||||.|||||.|||||
Sbjct 2361 CAAATGAGCTCCTTTGAGCAGCTCTTCTGTGCTCCATATCATGGATCCAGAGCTGGAATAGCAACTCAGTTTAG 2434
Query 258 CACTGCCAATGGACAGGTGAACCTTCGGGGACCAGGGACAAGTGCTGAATTTTCAGAATTTCCCTTGGTGAATG 331
|||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 2435 CACTGCCAATGGACAGGTGAACCTTTGGGGACCAGGGACAAGTGCTGAATTTTCAGAATTTCTCTTGGTGAATG 2508
Query 332 TAAATGATAATAGAGCTGGGATGACATCTTCACCTGATGCCACAACTGGCCAGACTTTTGGC------------ 393
||||||||||||||||||||||||||||||||||.||||||||||||.||||||||||||||
Sbjct 2509 TAAATGATAATAGAGCTGGGATGACATCTTCACCAGATGCCACAACTAGCCAGACTTTTGGCTAAAAAAAAAAA 2582
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2583 TGTGTAAATAATACTGGCACTTTAGAACAGATTACTCAAGAGTAATTGCTCTGTAAAATGGAGTGCTGTACAGT 2656
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2657 TCTAAGAGCAGTGCTTTCATAGCAAGCTGATAAGAATAGCAAGATAATCCAATAACTGCATTTTGTTTGGCTAG 2730
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2731 TCAGCATTCCTTAAACTGTCTTATGCGTCTTCACCGTTAGAGAAGCAAATGCATTACCTGTTTTAGATCAGAAC 2804
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2805 CTTGCTATTCACCCACACCAAGATAAAAGAAAAAAAAGACTTTGGCACAATTGTTTCCTAACTGATAACATTGT 2878
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2879 ACATTCTTAGGAGCGCAGTAATTGTGTGAAACTTCCTCATACTGTTTCTGAGTTTTTCAGCATAGTATTGCACT 2952
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2953 TCAGCAGGGAATCCGAGGATACGTCACAGCCAGTGAACTTAAAGTTTCAATGTCAAGAGATTATGGCTTAAATA 3026
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3027 TGTAGTTTGTCCTATAGGGGGGAATAAAAAGAAACCACCTTTAAAAATGATATGCCATATACCCTTGGTTTTCA 3100
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3101 TTTTGCATTATTTTGACATGGGTTTTCTTTTGTGAAGAAAAAGTAATAAAAATCTGATAGTCTAAGACTCCATT 3174
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3175 ATTTAAAAGCCTAATTACTTTTAAACTATGCATACTTTCAAACCTTTTACCAAAACACACAACCGCTGAAGCAT 3248
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3249 TCACTTCTCTATGGAAGTATGCATATCGGTGTCAGTTTCTTTGTACAGGTAAACTTAGATATTTTTTATGATTT 3322
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3323 TTAAATAAATGTATTTTATACACTTCCGTTGACATAGAACACTTAGAATTAATCTGGTATTTTTTGATTTCTCG 3396
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3397 AAGTTAAAATCATAGATTTTTTTTAGGTTTGATATGGTTGTGTCATAATCATCTTGTAATTGACAATTTTGCTT 3470
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3471 TTTGGCAATAAAAGAAAGTTGGGATATCTTTGAACTGTAAAACCTAGTTTAATTCTTCTCTTTCTAGACTTTTG 3544
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3545 ATAGATTGGATAATTAAACAGTACCCCAAGAAACTAAAGAAATGGGCATTTTAATTGCTTACTTACGTTACATT 3618
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3619 TAAGTGAATACTACTCACGACAGTTTTACAAAGCGGAAGTGCTTACTGATTCCAGTAACTGCAATTTCTTTTTC 3692
Query 394 --------------------------------------------------------------------- 393
Sbjct 3693 AGCTAGATGAGTGATGGGAAATTTTTTGTTGCATTTCAAAATCTAAATAAACTACAGACTTTATCCTTA 3761
