Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11274
- Subject:
- NM_001370664.1
- Aligned Length:
- 2353
- Identities:
- 1331
- Gaps:
- 992
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCGTCAACCCGGAGCCAGAACCCCCACGGCCTGAAGCAGATTGGCCTGGACCAGATCTGGGACGACCTCAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCCGGCATCCAGCAGGTGTACACACGGCAGAGCATGGCCAAGTCCAGATATATGGAGCTCTACACTCATGTTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATAACTACTGTACTAGTGTTCACCAGTCAAACCAAGCACGAGGAGCTGGAGTTCCTCCTTCTAAGTCGAAAAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGGCAGACACCTGGAGGAGCTCAGTTTGTTGGCCTGGAATTATATAAACGACTTAAGGAATTTTTGAAGAATTA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTGACAAATCTTCTTAAGGATGGAGAAGATTTGATGGATGAGAGTGTACTGAAATTCTACACTCAACAATGGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGATTATCGATTTTCAAGCAAAGTGCTGAATGGAATTTGTGCCTACCTCAATAGACATTGGGTTCGCCGTGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGTGACGAAGGACGAAAAGGAATATATGAAATCTATTCGCTTGCATTGGTGACTTGGAGAGACTGTCTGTTCAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCACTGAATAAACAGGTAACAAATGCTGTTTTAAAGCTGATTGAAAAGGAAAGGAATGGTGAAACCATCAATA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAAGATTGATTAGTGGAGTTGTACAGTCTTACGTGGAATTGGGGCTGAATGAAGATGATGCATTTGCAAAGGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCTACGTTAACAGTGTATAAAGAATCCTTTGAATCTCAATTTTTGGCTGACACAGAGAGATTTTATACCAGAGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGTACTGAATTCTTGCAGCAGAACCCAGTTACTGAATATATGAAAAAGGCAGAGGCTCGTCTGCTTGAGGAAC 814
Query 1 -------------------------------------------------------ATG----CAAG-------- 7
||| ||||
Sbjct 815 AACGAAGAGTTCAGGTTTACCTTCATGAAAGCACACAAGATGAATTAGCAAGGAAATGTGAACAAGTCCTCATT 888
Query 8 --------CTCGGAA-----------------TCAATATTTAGTTTTGAGTGTGGAGAA-----TAGATTGT-- 49
||.|||| |||..||||| |||..||..||.|| .||||| |
Sbjct 889 GAAAAACACTTGGAAATTTTCCACACAGAATTTCAGAATTTA---TTGGATGCTGACAAAAATGAAGATT-TGG 958
Query 50 --------TTTTTTCTTTTATATATATAAACAAAATGTCCTATGTG-TTTCAACGATGGTACCAAAAGTATT-- 112
|.|..||||.|||.||.| |..||..|||.||||.|.| .||.|| ||||.|.||
Sbjct 959 GACGCATGTATAATCTTGTATCTAGA-ATCCAGGATGGCCTAGGAGAATTGAA----------AAAACTGTTGG 1021
Query 113 ----------------------TCTTGCTCTTATCTCTTAACTTTGAAAAG---------------------GA 143
|||||| |.| |.|||||||| ||
Sbjct 1022 AGACACACATTCATAATCAGGGTCTTGC----AGC------CATTGAAAAGTGTGGAGAAGCTGCTTTAAATGA 1085
Query 144 CCCCAAAATGTATGTACAGACAGTGCTTGATGTTCATAGAAAATACAATGCCCTGGTAATGTCTGCATTCAACA 217
||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1086 CCCCAAAATGTATGTACAGACAGTGCTTGATGTTCATAAAAAATACAATGCCCTGGTAATGTCTGCATTCAACA 1159
Query 218 ATGACGCTGGCTTTGTGGCTGCTCTTGATAAGGCTTGTGGTCGCTTCATAAACAACAACGCGGTTACCAAGATG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 ATGACGCTGGCTTTGTGGCTGCTCTTGATAAGGCTTGTGGTCGCTTCATAAACAACAACGCGGTTACCAAGATG 1233
Query 292 GCCCAATCATCCAGTAAATCCCCTGAGTTGCTGGCTCGATACTGTGACTCCTTGTTGAAGAAAAGTTCCAAGAA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 GCCCAATCATCCAGTAAATCCCCTGAGTTGCTGGCTCGATACTGTGACTCCTTGTTGAAGAAAAGTTCCAAGAA 1307
Query 366 CCCAGAGGAGGCAGAACTAGAAGACACACTCAATCAAGTGATGGTTGTCTTCAAGTACATAGAAGACAAAGACG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 CCCAGAGGAGGCAGAACTAGAAGACACACTCAATCAAGTGATGGTTGTCTTCAAGTACATAGAAGACAAAGACG 1381
Query 440 TATTTCAGAAGTTCTATGCGAAGATGCTCGCCAAGAGGCTCGTCCACCAGAACAGTGCAAGTGACGATGCCGAA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TATTTCAGAAGTTCTATGCGAAGATGCTCGCCAAGAGGCTCGTCCACCAGAACAGTGCAAGTGACGATGCCGAA 1455
Query 514 GCCAGCATGATCTCCAAGTTAAAGCAAGCTTGCGGGTTCGAGTACACCTCTAAACTTCAGCGCATGTTTCAAGA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 GCCAGCATGATCTCCAAGTTAAAGCAAGCTTGCGGGTTCGAGTACACCTCTAAACTTCAGCGCATGTTTCAAGA 1529
Query 588 CATTGGCGTGAGCAAAGATCTGAACGAGCAATTCAAAAAGCACTTGACAAACTCAGAACCCCTAGACTTGGATT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 CATTGGCGTGAGCAAAGATCTGAACGAGCAATTCAAAAAGCACTTGACAAACTCAGAACCCCTAGACTTGGATT 1603
Query 662 TCAGCATTCAAGTGCTGAGCTCCGGGTCCTGGCCCTTCCAGCAGTTTTGTACATTTGCCTTGCCGTCAGAGTTG 735
|||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 1604 TCAGCATTCAAGTGCTGAGCTCCGGGTCCTGGCCCTTCCAGCAGTCTTGTACATTTGCCTTGCCGTCAGAGTTG 1677
Query 736 GAACGTAGTTATCAGCGATTCACAGCTTTCTACGCCAGCCGCCACAGTGGCCGAAAATTGACGTGGTTATATCA 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GAACGTAGTTATCAGCGATTCACAGCTTTCTACGCCAGCCGCCACAGTGGCCGAAAATTGACGTGGTTATATCA 1751
Query 810 GTTGTCTAAAGGAGAATTGGTAACTAACTGCTTCAAAAACAGATATACTTTGCAGGCGTCGACATTCCAGATGG 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 GTTGTCTAAAGGAGAATTGGTAACTAACTGCTTCAAAAACAGATATACTTTGCAGGCGTCGACATTCCAGATGG 1825
Query 884 CTATCCTGCTTCAGTACAACACGGAAGATGCCTACACTGTGCAGCAGCTGACCGACAGCACTCAAATTAAAATG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 CTATCCTGCTTCAGTACAACACGGAAGATGCCTACACTGTGCAGCAGCTGACCGACAGCACTCAAATTAAAATG 1899
Query 958 GACATTTTGGCGCAAGTTTTACAGATTTTATTAAAGTCGAAGCTATTGGTCTTGGAAGATGAAAATGCAAATGT 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 GACATTTTGGCGCAAGTTTTACAGATTTTATTAAAGTCGAAGCTATTGGTCTTGGAAGATGAAAATGCAAATGT 1973
Query 1032 TGATGAGGTGGAATTGAAGCCAGATACCTTAATAAAATTATATCTTGGTTATAAAAATAAGAAATTAAGGGTTA 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 TGATGAGGTGGAATTGAAGCCAGATACCTTAATAAAATTATATCTTGGTTATAAAAATAAGAAATTAAGGGTTA 2047
Query 1106 ACATCAATGTGCCAATGAAAACCGAACAGAAGCAGGAACAAGAAACCACACACAAAAACATCGAGGAAGACCGC 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048 ACATCAATGTGCCAATGAAAACCGAACAGAAGCAGGAACAAGAAACCACACACAAAAACATCGAGGAAGACCGC 2121
Query 1180 AAACTACTGATTCAGGCGGCCATCGTGAGAATCATGAAGATGAGGAAGGTTCTGAAACACCAGCAGTTACTTGG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2122 AAACTACTGATTCAGGCGGCCATCGTGAGAATCATGAAGATGAGGAAGGTTCTGAAACACCAGCAGTTACTTGG 2195
Query 1254 CGAGGTCCTCACTCAGCTGTCCTCCAGGTTCAAACCTCGAGTCCCTGTGATCAAGAAATGCATTGACATTCTAA 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 CGAGGTCCTCACTCAGCTGTCCTCCAGGTTCAAACCTCGAGTCCCTGTGATCAAGAAATGCATTGACATTCTAA 2269
Query 1328 TTGAGAAAGAATATTTGGAGCGAGTGGATGGTGAAAAGGACACCTACAGTTACTTGGCT 1386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2270 TTGAGAAAGAATATTTGGAGCGAGTGGATGGTGAAAAGGACACCTACAGTTACTTGGCT 2328
