Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11342
Subject:
NM_001285446.1
Aligned Length:
1842
Identities:
1006
Gaps:
711

Alignment

Query    1  ATGGGGTTTCACCATGTTGGCCAGGCTCGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCATTGGCCTCCCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ACGTGCTGGGATTACAGTTGGTCCTGAGAAAAGGGTGCCAGCGATGCCTGGATCGCCTGTGGAAGTGAAGATAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AGTCCAGATCCTCACCTCCCACCATGCCACCCCTCCCACCAATAAATCCTGGAGGACCGAGGCCAGTGTCCTTC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  ACTCCTACTGCATTAAGCAATGGCATCAACCATTCTCCTCCTACCCTGAATGGTGCCCCATCACCGCCACAGAG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  ATTCAGCAATGGTCCTGCCTCCTCCACATCATCTGCACTCACAAATCAGCAATTGCCAGCCACTTGTGGTGCTC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  GACAACTCAGCAAGTTGAAACGCTTTCTTACCACTCTGCAACAGTTTGGCAATGACATCTCCCCTGAGATTGGG  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GAGAAGGTGCGGACTCTTGTTCTTGCACTGGTGAACTCAACAGTGACAATTGAGGAATTCCACTGTAAGCTCCA  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  AGAAGCCACAAACTTTCCCCTTCGTCCTTTTGTGATTCCATTTCTCAAGGCCAACCTGCCCCTGCTGCAGCGGG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  AACTGCTGCACTGCGCTCGGGCGGCCAAGCAGACCCCATCCCAGTACCTGGCTCAGCACGAACACCTTCTGCTC  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  AACACAAGCATTGCATCGCCTGCTGACTCGTCAGAGTTGCTCATGGAGGTGCACGGAAATGGGAAGAGGCCCAG  740
                                                      ||||||||.||.||||||||.|||||||||||
Sbjct    1  ------------------------------------------ATGGAGGTTCATGGAAATGGAAAGAGGCCCAG  32

Query  741  TCCAGAGAGGAGAGAAGAGAATAGTTTTGATAGAGACACAATTGCTCCTGAGCCTCCTGCCAAGAGAGTATGTA  814
            |||.||.|||||.||.|||||||.||||||.|||||.|||.||.|||||||.||.||||||||||||||.||||
Sbjct   33  TCCGGAAAGGAGGGACGAGAATAATTTTGAAAGAGATACAGTTCCTCCTGAACCGCCTGCCAAGAGAGTGTGTA  106

Query  815  CCATCAGCCCTGCTCCTCGGCACAGTCCTGCTCTCACTGTGCCCCTCATGAATCCTGGGGGCCAATTCCATCCT  888
            |.||||||||||||||||||||||||||.||.||||||||.|||||.|||||||||||||||||.|||||||||
Sbjct  107  CTATCAGCCCTGCTCCTCGGCACAGTCCCGCCCTCACTGTTCCCCTTATGAATCCTGGGGGCCAGTTCCATCCT  180

Query  889  ACCCCTCCACCTCTTCAGCATTACACCTTAGAGGATATTGCAACTTCTCACCTGTATCGGGAACCCAACAAGAT  962
            ||.||.||||||||||||||.||.||..||||.||.|||||||||||||||||||||||||||||.||||||||
Sbjct  181  ACTCCACCACCTCTTCAGCACTATACACTAGAAGACATTGCAACTTCTCACCTGTATCGGGAACCAAACAAGAT  254

Query  963  GCTAGAGCATCGAGAAGTTCGTGATAGACACCACAGTCTTGGTCTAAATGGAGGCTATCAAGATGAGTTGGTAG  1036
            ||||||.||.||||||||||||||.||.|||||||.||||.||||.||||||||||||||||||||||||||||
Sbjct  255  GCTAGAACACCGAGAAGTTCGTGAGAGGCACCACAATCTTAGTCTCAATGGAGGCTATCAAGATGAGTTGGTAG  328

Query 1037  ATCATCGTTTGACAGAAAGGGAATGGGCTGATGAATGGAAACATCTTGACCATGCGCTGAATTGCATTATGGAA  1110
            |.||.|||||||||||||||||.||||||||||||||||||||.|||||||||||.||||||||||||||||||
Sbjct  329  ACCACCGTTTGACAGAAAGGGAGTGGGCTGATGAATGGAAACACCTTGACCATGCACTGAATTGCATTATGGAA  402

Query 1111  ATGGTAGAGAAAACAAGGCGCTCTATGGCAGTTCTGCGGCGCTGTCAGGAATCAGATCGTGAAGAACTCAACTA  1184
            ||||||||||||||.||||||||.||||||||||||.||||||||||||||||.||.|||||||||||||||||
Sbjct  403  ATGGTAGAGAAAACTAGGCGCTCCATGGCAGTTCTGAGGCGCTGTCAGGAATCTGACCGTGAAGAACTCAACTA  476

Query 1185  CTGGAAAAGACGGTACAATGAAAACACAGAGCTGAGGAAAACGGGGACCGAGTTGGTCTCCAGGCAGCACAGCC  1258
            .||||||.|.||||..||||||||.||||||.||||||||||.|||||.|||||||||||.|||||||||||||
Sbjct  477  TTGGAAACGGCGGTTTAATGAAAATACAGAGTTGAGGAAAACTGGGACTGAGTTGGTCTCTAGGCAGCACAGCC  550

Query 1259  CTGGGAGTGCAGATTCTCTCAGCAATGATTCTCAGAGAGAGTTCAACAGCAGGCCAGGTACAGGATACGTACCT  1332
            ||||||||.||||||||||||||||.|||||||||.|.||.||.|.|||.||.||||..||||||||.||.|||
Sbjct  551  CTGGGAGTACAGATTCTCTCAGCAACGATTCTCAGCGGGAATTTACCAGTAGACCAGCAACAGGATATGTGCCT  624

Query 1333  GTGGAGTTTTGGAAAAAAACAGAAGAAGCTGTGAATAAGGTGAAAATTCAGGCCATGTCAGAAGTACAGAAGGC  1406
            ||||||||||||||.||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  625  GTGGAGTTTTGGAAGAAAACAGAAGAAGCCGTGAATAAGGTGAAAATTCAGGCCATGTCAGAGGTACAGAAGGC  698

Query 1407  CGTCGCTGAGGCAGAGCAGAAAGCCTTTGAAGTGATTGCAACAGAGAGAGCACGAATGGAGCAAACCATAGCGG  1480
            .||.||||||||||||||.|||||||||||||||||||||||.||||||||.|||||||||||.||||||||||
Sbjct  699  TGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGAATGGAGCAGACCATAGCGG  772

Query 1481  ATGTCAAGCGGCAGGCCGCAGAGGATGCTTTCCTCGTCATCAATGAGCAAGAGGAGTCCACGGAGAACTGCTGG  1554
            |||||||.||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||.||||||||||||
Sbjct  773  ATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTGGTCATCAATGAGCAAGAAGAGTCCACAGAGAACTGCTGG  846

Query 1555  AACTGTGGCCGCAAAGCCAGCGAGACATGCAGTGGCTGCAATATCGCGCGATACTGTGGCTCTTTCTGCCAGCA  1628
            |||||||||||.||||||||.|||||.||||||||||||||.||.||.||.|||||.|||||.|||||||||||
Sbjct  847  AACTGTGGCCGAAAAGCCAGTGAGACGTGCAGTGGCTGCAACATTGCTCGCTACTGCGGCTCCTTCTGCCAGCA  920

Query 1629  CAAGGACTGGGAGCGGCACCACCGCCTCTGTGGTCAGAACCTGCATGGCCAGAGCCCCCACGGCCAGGGCCGGC  1702
            .||||||||||||||||||||||||||||||||.||||..||.||||||||.||.||||||.|||||.||.|||
Sbjct  921  TAAGGACTGGGAGCGGCACCACCGCCTCTGTGGCCAGAGTCTACATGGCCACAGTCCCCACAGCCAGAGCAGGC  994

Query 1703  CGCTGCTTCCTGTAGGCAGGGGCTCCTCTGCCAGGTCCGCCGACTGCAGCGTGCCCAGCCCAGCCCTCGACAAG  1776
            |.|||||.||||.|||..||||   |||.||||||||.||.||||||||.|||||||||||||||||.||||||
Sbjct  995  CACTGCTCCCTGGAGGGCGGGG---CTCAGCCAGGTCTGCTGACTGCAGTGTGCCCAGCCCAGCCCTGGACAAG  1065

Query 1777  ACCTCGGCAACCACATCGCGTTCCTCAACACCTGCTTCTGTGACAGCTATCGACACCAACGGACTC  1842
            |||||.||.|||||.||.||.||||||||||||||.|||||||||||.||.||..|||||||.|||
Sbjct 1066  ACCTCAGCTACCACCTCACGGTCCTCAACACCTGCCTCTGTGACAGCCATTGATGCCAACGGGCTC  1131

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