Construct: ORF ccsbBroad304_11342

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000469.1_s304c1, BRDN0000409581
Derived from:
ccsbBroadEn_11342
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CBFA2T2 (9139)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11342
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_011529101.2 99.9% 100% 870C>T
2 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... NM_001032999.3 96.5% 95.2% (many diffs)
3 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_017028122.2 96.4% 95.1% (many diffs)
4 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... NM_005093.3 96.1% 95.7% (many diffs)
5 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... NM_001039709.1 93.5% 93.6% 0_1ins117;753C>T
6 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_011529103.2 93.5% 93.6% 0_1ins117;753C>T
7 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_017028121.1 93.5% 93.6% 0_1ins117;753C>T
8 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_011529102.2 93.4% 93.4% 0_1ins117;753C>T;1235_1236insAGA
9 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_017028123.1 72.8% 67.6% (many diffs)
10 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_011529107.2 60.8% 59.7% (many diffs)
11 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_017028124.2 60.8% 59.7% (many diffs)
12 human 9139 CBFA2T2 CBFA2/RUNX1 partner transcr... XM_017028125.1 60.6% 59.6% (many diffs)
13 mouse 12396 Cbfa2t2 core-binding factor, runt d... NM_172860.2 86.5% 91.8% (many diffs)
14 mouse 12396 Cbfa2t2 core-binding factor, runt d... NM_009823.1 86.3% 91.6% (many diffs)
15 mouse 12396 Cbfa2t2 core-binding factor, runt d... XM_006498640.2 83.7% 90.3% (many diffs)
16 mouse 12396 Cbfa2t2 core-binding factor, runt d... XM_006498641.1 78.1% 84.6% (many diffs)
17 mouse 12396 Cbfa2t2 core-binding factor, runt d... XM_006498642.2 61.2% 64.8% (many diffs)
18 mouse 12396 Cbfa2t2 core-binding factor, runt d... NM_001285446.1 54.6% 58.4% (many diffs)
19 mouse 12396 Cbfa2t2 core-binding factor, runt d... XM_011239268.2 47.3% 50.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1908
ORF length:
1842
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg gtttcaccat gttggccagg ctcgtcttga actcctgacc tcaggtgatc
121tgcctgcatt ggcctcccaa cgtgctggga ttacagttgg tcctgagaaa agggtgccag
181cgatgcctgg atcgcctgtg gaagtgaaga tacagtccag atcctcacct cccaccatgc
241cacccctccc accaataaat cctggaggac cgaggccagt gtccttcact cctactgcat
301taagcaatgg catcaaccat tctcctccta ccctgaatgg tgccccatca ccgccacaga
361gattcagcaa tggtcctgcc tcctccacat catctgcact cacaaatcag caattgccag
421ccacttgtgg tgctcgacaa ctcagcaagt tgaaacgctt tcttaccact ctgcaacagt
481ttggcaatga catctcccct gagattgggg agaaggtgcg gactcttgtt cttgcactgg
541tgaactcaac agtgacaatt gaggaattcc actgtaagct ccaagaagcc acaaactttc
601cccttcgtcc ttttgtgatt ccatttctca aggccaacct gcccctgctg cagcgggaac
661tgctgcactg cgctcgggcg gccaagcaga ccccatccca gtacctggct cagcacgaac
721accttctgct caacacaagc attgcatcgc ctgctgactc gtcagagttg ctcatggagg
781tgcacggaaa tgggaagagg cccagtccag agaggagaga agagaatagt tttgatagag
841acacaattgc tcctgagcct cctgccaaga gagtatgtac catcagccct gctcctcggc
901acagtcctgc tctcactgtg cccctcatga atcctggggg ccaattccat cctacccctc
961cacctcttca gcattacacc ttagaggata ttgcaacttc tcacctgtat cgggaaccca
1021acaagatgct agagcatcga gaagttcgtg atagacacca cagtcttggt ctaaatggag
1081gctatcaaga tgagttggta gatcatcgtt tgacagaaag ggaatgggct gatgaatgga
1141aacatcttga ccatgcgctg aattgcatta tggaaatggt agagaaaaca aggcgctcta
1201tggcagttct gcggcgctgt caggaatcag atcgtgaaga actcaactac tggaaaagac
1261ggtacaatga aaacacagag ctgaggaaaa cggggaccga gttggtctcc aggcagcaca
1321gccctgggag tgcagattct ctcagcaatg attctcagag agagttcaac agcaggccag
1381gtacaggata cgtacctgtg gagttttgga aaaaaacaga agaagctgtg aataaggtga
1441aaattcaggc catgtcagaa gtacagaagg ccgtcgctga ggcagagcag aaagcctttg
1501aagtgattgc aacagagaga gcacgaatgg agcaaaccat agcggatgtc aagcggcagg
1561ccgcagagga tgctttcctc gtcatcaatg agcaagagga gtccacggag aactgctgga
1621actgtggccg caaagccagc gagacatgca gtggctgcaa tatcgcgcga tactgtggct
1681ctttctgcca gcacaaggac tgggagcggc accaccgcct ctgtggtcag aacctgcatg
1741gccagagccc ccacggccag ggccggccgc tgcttcctgt aggcaggggc tcctctgcca
1801ggtccgccga ctgcagcgtg cccagcccag ccctcgacaa gacctcggca accacatcgc
1861gttcctcaac acctgcttct gtgacagcta tcgacaccaa cggactctgc ccaactttct
1921tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
1981aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)