Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11349
- Subject:
- XR_002957735.1
- Aligned Length:
- 5882
- Identities:
- 659
- Gaps:
- 5191
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCAGGAATGTGAAAGTGATGGTGCTCTAAAAATCAATCTGGAAGCAGATCTGCCAACATAAGAATGTGGTTGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGAGTCTAACCAGGAAAAGGAGAGATGCGAACTCGCTCCCCCTCCCCTCTCGCCATCGTCCCCCGCCCCCAGC 148
Query 1 --------------------------------------------------------ATGGCGAAGCACGAGCAG 18
|.||||||||||||||||
Sbjct 149 GAGCAAGCCGCCCCCTGCTCTGCGCTGTCTCTCCAATGGCGTCTGCCTCCGGGGCCACGGCGAAGCACGAGCAG 222
Query 19 ATCCTGGTCCTCGATCCGCCCACAGACCTCAAATTCAAAGGCCCCTTCACAGATGTAGTCACTACAAATCTTAA 92
||||||||||||||.|||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATCCTGGTCCTCGACCCGCCCATAGACCTCAAATTCAAAGGCCCCTTCACAGATGTAGTCACTACAAATCTTAA 296
Query 93 ATTGCGAAATCCATCGGATAGAAAAGTGTGTTTCAAAGTGAAGACTACAGCACCTCGCCGGTACTGTGTGAGGC 166
||||||||||||||||||||||||||||||||||||||||||||||||.|..||||.|||||||||||||||||
Sbjct 297 ATTGCGAAATCCATCGGATAGAAAAGTGTGTTTCAAAGTGAAGACTACCGTGCCTCACCGGTACTGTGTGAGGC 370
Query 167 CCAACAGTGGAATTATTGACCCAGGGTCAACTGTGACTGTTTCAGTAATGCTACAGCCCTTTGACTATGATCCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCAACAGTGGAATTATTGACCCAGGGTCAACTGTGACTGTTTCAGTAATGCTACAGCCCTTTGACTATGATCCG 444
Query 241 AATGAAAAGAGTAAACACAAGTTTATGGTACAGACAATTTTTGCTCCACCAAACACTTCAGATATGGAAGCTGT 314
||||||||||||||||||||||||||||| ||||||||||||||||.||||||||||||||||||||||||
Sbjct 445 AATGAAAAGAGTAAACACAAGTTTATGGT----ACAATTTTTGCTCCACTAAACACTTCAGATATGGAAGCTGT 514
Query 315 GTGGAAAGAGGCAAAACCTGATGAATTAATGGATTCCAAATTGAGATGCGTATTTGAAATGCCCAATGAAAATG 388
||||||.||||||||||||.|||||||||||||||||||||.||| ||.|||||||||||||
Sbjct 515 GTGGAATGAGGCAAAACCTCATGAATTAATGGATTCCAAATGGAG-------------ATCCCCAATGAAAATG 575
Query 389 ATAAATTGAATGATATGGAACCTAGCAAAGCTGTTCCACTGAATGCATCTAAGCAAGATGGACCTATGCCAAAA 462
|||||||||||||.||||||||.|||||||||||.|||||||||||||||||||||||.||.||.|.||||.||
Sbjct 576 ATAAATTGAATGACATGGAACCCAGCAAAGCTGTCCCACTGAATGCATCTAAGCAAGACGGGCCCACGCCACAA 649
Query 463 CCACACAGTGTTTCACTTAATGATACCGAAACAAGGAAACTAATGGAAGAGTGTAAAAGACTTCAGGGAGAAAT 536
||||||||||.|||||||.|||||||.||||||||||||||||..|||||||||||||||||||||||||||||
Sbjct 650 CCACACAGTGCTTCACTTCATGATACTGAAACAAGGAAACTAACAGAAGAGTGTAAAAGACTTCAGGGAGAAAT 723
Query 537 GATGAAGCTATCAGAAGAAAATCGGCACCTGAGAGATGAAGGTTTAAGGCTCAGAAAGGTAGCACATTCGGATA 610
|||||||||||||||||.|||||..|||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 724 GATGAAGCTATCAGAAGCAAATCAACACCTGAGAGATGAAGGTTTAAGGCTCAGAAAGGTAGCATATTCGGATA 797
Query 611 AACCTGGATCAACCTCAACTGCATCCTTCAGAGATAATGTCACCAGTCCTCTTCCTTCACTTCTTGTTGTAATT 684
||||||||||||||||||||||||||||||||| ||||||||||||.|||||||||||||||||||||||||
Sbjct 798 AACCTGGATCAACCTCAACTGCATCCTTCAGAG---ATGTCACCAGTCTTCTTCCTTCACTTCTTGTTGTAATT 868
Query 685 GCAGCCATTTTCATTGGATTC--TTTCTA--------------------------------------------- 711
|||||||||||||.||||||| |||||.
Sbjct 869 GCAGCCATTTTCACTGGATTCCTTTTCTTTTTTTGGAGACGGAGTCTCACTCTTGTTGCCCAGGCTGGAGTGCA 942
Query 712 -------------------------------------------------------------------------- 711
Sbjct 943 GAGGCGTGATCTCGGCTCACTGCAACCTCCGTCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCGAGTA 1016
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1017 GCTGGGATTACAGGCGCCCGCCACCACACCCAGCTAATTTTTGCATTTTTAGTAGAGAAGGGGTTTCACCATGT 1090
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1091 TGGCCAGGCTGGTCTTGAACTCCTAACCTCAGGTGATCTACCCGCCTCGGCCTCCAAAGTGCTGGGATTACAGG 1164
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1165 AGTGAGCCACTATGCCCGGCCTTCATTGGATTCTTTCTAGGGAAATTCGTCTTGTAGAGCAAAGCATGCAGAGT 1238
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1239 GCTATTTCTTTTTTTTTTCTCTTGACCAGAAGATTTGTTTACCTACCATTTCATTGGTAGTATGGCCTGCGGTG 1312
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1313 ACCATTTTTTTGTGTGTGTACAGCGTCATACAGGCTTTGCCTTTAATGATCTCTTATGGTTAGAAAACACAATA 1386
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1387 AAAACAAACTGGCTACTGGACAAATTGTATATTACCAGATCATCACTAGCAGCTTTCAGTTGCACTTCAGTCCT 1460
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1461 TTATCAAATTCATAAAGAATTGTTCTGGGAAGTGAGGAGCACCTCTGCCTGGCCACCCTGTCTGGGAAGTGAGG 1534
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1535 AGCCCCGCTTCCCGGGAGCCGCCCCATCTGGGAAGTGAGGAGCGCTTGCCTGGCCGCCCAACTGTCTGGGAAGT 1608
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1609 GAGGTGTGCCTGTGCCTGGCTGCCGCACTGTCTAGGAAGTGAGGTGCGTCTCTGCTGCCCGCCGCCCCATCTGG 1682
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1683 GAAGTGAGGAGCGCCTCTGCCCGGCTGCTGTGCAATCCTGCAAGTATGAAGTGACAGCCTTGTGTGTGATCTTT 1756
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1757 CTGCCCTCCCCAAGTTTGCATTTTCGACATTAAAATTTACTTTTTAATTAAAAGTTTTAAATTGGAGAATTAAA 1830
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1831 AAAAAAACTAATTTCAGCTTATTATTACTAGAGATGCATGAAAGCTCTACCCACATACATGCTAGGAAAAACAG 1904
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1905 TTCAGAAAACACAGGGGACTGACTCTTCCAAAAGGAGCAGCTGTCTACTCTGCGGCCTGCTTCCAAGGGCCACT 1978
Query 712 -------------------------------------------------------------------------- 711
Sbjct 1979 GTGGGAGGAAGCCTGGGCTGCAGCGTTCCGAGGCAGCAGCAGCAGAGGGGAAGGAAGGAAGCAGGCCTTGCCTT 2052
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2053 GTGTGGCATTCCAGTTCCCTCTCCCAGCAGGGGCCAGATTCCCCTTCCTTAGCTTCAACTACAATTTGGCGAAA 2126
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2127 GCAATTCTAGGGTAATCGGGGGCAGTGAGGGGTGGGGGGCGGTGAGAGGTTTACTTCCCTCTGCTTAGATAACA 2200
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2201 GAGGTAGAAGAAACCCTTTCTGTCAATTGCTTGGCCTCTAAATGCCACAGGCAGGCTACTTTTCATGGCTGTTC 2274
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2275 GAAGCATCCAAGCAATCCAAAGTGGCTTTGAACAACAGAGTAAGGCCAAGAAGGGCAAAAAGGGACCAGAGCTG 2348
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2349 AGGTGTTTGGGCCAGTTCTGGATCACTCATATTGTTGAGGGAGGGGTGGGGGCATAAGATAACAAGGAGCCTAC 2422
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2423 AGGCCACTTGAGGAAATTCTCTGGTTTTGCTGCAGCTTCGCTTCAAACTTCCACAGCAGAAGAGTTGGAATTCT 2496
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2497 AATGCCGCAATATCGTTGTAATACCAGGGATTCTCTAGAGGCAAGTTAAGGCTTTCTGGGCAAAGAAAACAATT 2570
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2571 CCAGATGATATTGTGATAGAATGCTACAGTGAAATGCTTCTTAATGACTCTCCTGTCCTGCCTAAAGGACAAAG 2644
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2645 ACCTATGAGTGACTTCAACTTGACGTGATGTTTCAGTGATCTTTTACTTCAGCTCTAAGTCAGAATCAATGCCA 2718
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2719 CAGGAAAAGAAAAGCTTCTTACATCTCAGACATCTGCTTGCTGAGCAAACACAAACAAGAACACATGTATTGTT 2792
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2793 TCCCAGGAGCTGGCAAACTAGATCTCAAGTCACACAGTTACAAAGAGAGCTCTCATTCAGATGCCGGGCATATA 2866
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2867 AGCTCAGCTACCCAGAAAGTTCAGCTTTAATGAAGACTGTAGTTTTAGAATGAAAGCCTGAGCAGGAAGGATTT 2940
Query 712 -------------------------------------------------------------------------- 711
Sbjct 2941 CTGCCCTGGGAATTCTCAATGCTCTGCCTGAGTCACACTGGAGGATGGAGATAGGCTCCTCATTCCAGCGGCCA 3014
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3015 GCAGCTGCCACAGTCACAAGACCACCCTCCAAACAGCAAGGGTCTTACGATGACAACGGGGACTCTGAAGAGAA 3088
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3089 GCCAGTCAAAGACACAGGGCTTTGGACAAGATCAAGGGTCTTCACCAGGAAAGCTTAATGCAGAAGCCCCCTCC 3162
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3163 CTCCAAGTCCCCTCAGCGTGAGCCTTGAGCCTTGACACAGCTGTTTCCACCTGCAAGGGCTGGAGAGGCCAAGT 3236
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3237 TCACGCAGATGTTCAGCAATGTTCAAGCAAATGATGTGTAAATAGATGAAGTGGTCTTAGAGATGGTCTAAGAG 3310
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3311 GAGGGAACAGGCTCAGAGAGGTGAGGTGATTTGCCCACGATCCAATGTGAATTAGAGACCATTAGGACACGAAC 3384
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3385 TCAGGTATATTTCCACTCTTACGGTGAATCATAAGGTTCCCAGTAAGTGTAAAATGCTGCAGAGAGGTTAAAAG 3458
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3459 AATATTGTAACCAACAGCTTTCTGCTTTCATTCTGCTCTGGAATCATTTGTGTAAACTCACAGCAGGAAAAGAT 3532
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3533 AACAGTTTTCTTCAAGTCTGTTAAACTCACTTCTAACATAAAAACATTAAAGAAACTTGACACCATTTTTTGAG 3606
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3607 TCAGTTAATCCTAATTTGACTGGAATCAGTTACTTGTAAGTGTCTTCAAATTGCTTATGAGACACGGAGTGCTA 3680
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3681 CAGGAGAGATGTGGGTGCTTCTCCCCATTGGTTTTTAACATATTATTCCTGCAATGGAATTGTCCAGATTGATG 3754
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3755 CAATTTATAGCCTCAATTTGATTCTAAAATATATTCAAATACTCTTTAAAAATTCAGCCTTGTTTTAGCCCAAA 3828
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3829 TAGAACCTTACTAGCAAGAGGGGGATTCATATACTCATCAGAAATGAATGACTTTGGGAAGAAAGGCAAGGACA 3902
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3903 CCTGGAGGAAGGAAAAAAGATGACCTATCTATAAACTGCCACTCCCTCATTTATCAGGCAAGTTTGCAGCTCTG 3976
Query 712 -------------------------------------------------------------------------- 711
Sbjct 3977 TGAATTCAATGCCTCTGTGCTCTCATTCAGGGACAAACAAGAATTTTCCTGTAAGACAGCCACAGTCACATTCT 4050
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4051 CATTTCCATGCCTAAGAGCCTGAAGCTTGAACAAAGGGCTTCAGTTAGTTTCATGTGAGCCAAAATGGAATGTG 4124
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4125 AGTGCCATTCAGAGCCACACACTAAAAAGATTTCAGCTGGGACACTGGCTCCCACAGTCCTGGGGGAGCAAATT 4198
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4199 CCGGTTGTGTGGCAACAAAGGCTATGCTGCCAGCCCTGCCTGTCCTCCACAGGGGCCACCAGGACTGCCGTGCA 4272
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4273 GACCAGGCTCCACCCTCCCCCACACCGGTTTGTGTGACAACAGGGCTGTCTTTTCTCTTCCTGAATTTCTGAAT 4346
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4347 GGAGCTGGTACATGGGCCAGCCACTATTTTGTCAGAACAGGTTAAGGGGTGTGGCCTCAGGCATATGAAAGGAG 4420
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4421 CCTCTCGCTCTTCTGGGGTGGTGATTCAGTCCTAGGAAGTTATTGCTTGGTTTACCTATTCTCATAAAAAGTCT 4494
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4495 TGATAAATGAAGGTAGTAGTAGCAGAAATATGACTATGAATGTTCTAGATCACAGCTGTAGTTGGGTGAAGGGA 4568
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4569 AAAGTAACAGAGGAGAGGGGCTAACTTCCAAACTGAGAGGGTAAAGTGCCAGTCTGTGCTAAAAGAACGTGAAA 4642
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4643 AGGAAACCTATTAGAGAAATAATACACTGGGGGGAAAGTCATAATGATAGAGGCTGGTGAGTGCCAGAAATTAT 4716
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4717 ACCAAAGCGAAGTTGAGACCACAGAAATCTCAGTCTCTGAGATAAGGGCTGCTTTTGATGTCATTCGGATGATT 4790
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4791 TGGTGATTGTCAGAAAACAACTTCTTCAGGTTACAGACCTGGACCCATGCCCACGGGTCCCGTCACAGTCACTT 4864
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4865 GGACCCGTGCCCAAACCACACCCACCTGTGGCCCTGAGGGTTGGCACTCAGGCGCCCAGGTGGCTCCTTTGATC 4938
Query 712 -------------------------------------------------------------------------- 711
Sbjct 4939 CCTGAAACATCCATGCAGACCCACTACTTATATTCCAGTCTGTCCTGGAGTCAAAGGAGATGAAGGAGGAAAAA 5012
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5013 TATCTTTTTAAAGTATCCAGGCAATTTTACTCATAGTTCTGTTTAGTTCCAGATAGCAACAGCTGATTGTTCAA 5086
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5087 AGTGCAGGGTTTTTGGATATTCAAGTACCACAGGATCGGAGAAAAGGAGTACTTGAAACCTAGAGTTGCGTTTT 5160
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5161 CACTTGAGAAGACACACTTTGGAAACACCTATCCAACAGACTACAAATATAGGCTATTAAATTAAAAATCTGGT 5234
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5235 TTCAAAATAATACCCACTTAGGTTGGAAATATCTTTCTCCAAACTCAGATCCAACTTTTGAATTGTTTGGTATC 5308
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5309 AAAGGCAAAGTTAGAGGGACTTGGGTTTAAAAACTAAAATTACAAGTGAGTGCTTAAAAAAAAAACAACTCAAA 5382
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5383 ACATCTTTTTATCAAATAAGGGACACACACACACAAAAGGCAAACGATGATATCTACATGCTTAGACTGGGAGA 5456
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5457 GCAGCTCCCAGGCTCCCCTGGAGGGATGTTCTCTCAAACCTCAGTAAACTGAGTTTGTCATTGAACTTTGAACC 5530
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5531 TGGTAGTGAGCTCAGCAATCTACCTGGTCCAAGTCCCCCATTTTAGAGGTGAAGAAATTGAAGTCCACAGCGAC 5604
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5605 TTTGTCCAGGGTGAAAAGCAGAGCCAGGGCACAGCCCAGATGCTCAGCCCACCCAGAGCCCTTCTGAGACATCA 5678
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5679 CACTGTGGTCACACGACGGCAGCTCCATAGCCGGCCTTGCTGCTCTGGAGACCGTGGGAGCTAGAGGACACCCC 5752
Query 712 -------------------------------------------------------------------------- 711
Sbjct 5753 TGATTATGAATTTCAATAAAACGAGCTGCAAAGATGTTTCCAATTTAAGGGCGCTGTTGAACAGCATTTCCAAA 5826
Query 712 ------------------------------------ 711
Sbjct 5827 ATTTGCTTGGTGATGAGAATCATCTGGGGCACTTGT 5862
