Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11391
Subject:
NM_001270411.2
Aligned Length:
1075
Identities:
734
Gaps:
326

Alignment

Query    1  ATGAATCCACAGATCAGAAATCCGATGGAGCGGATGTATCGAGACACATTCTACGACAACTTTGAAAACGAACC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGAATCCACAGATCAGAAATCCGATGGAGCGGATGTATCGAGACACATTCTACGACAACTTTGAAAACGAACC  74

Query   75  CATCCTCTATGGTCGGAGCTACACTTGGCTGTGCTATGAAGTGAAAATAAAGAGGGGCCGCTCAAATCTCCTTT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CATCCTCTATGGTCGGAGCTACACTTGGCTGTGCTATGAAGTGAAAATAAAGAGGGGCCGCTCAAATCTCCTTT  148

Query  149  GGGACACAGGGGTCTTTCGAGGCCAGGTGTATTTCGAGCCTCAGTACCACGCAGAAATGTGCTTCCTCTCTTGG  222
            |||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct  149  GGGACACAGGGGTCTTTCGAGGCCAGGTGTATTTCAAGCCTCAGTACCACGCAGAAATGTGCTTCCTCTCTTGG  222

Query  223  TTCTGTGGCAACCAGCTGCCTGCTTACAAGTGTTTCCAGATCACCTGGTTTGTATCCTGGACCCCCTGCCCGGA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTCTGTGGCAACCAGCTGCCTGCTTACAAGTGTTTCCAGATCACCTGGTTTGTATCCTGGACCCCCTGCCCGGA  296

Query  297  CTGTGTGGCGAAGCTGGCCGAATTCCTGTCTGAGCACCCCAATGTCACCCTGACCATCTCCGCCGCCCGCCTCT  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct  297  CTGTGTGGCGAAGCTGGCCGAATTCCTGTCTGAGCACCCCAATGTCACCCTGACCATCTCTGCCGCCCGCCTCT  370

Query  371  ACTACTACTGGGAAAGAGATTACCGAAGGGCGCTCTGCAGGCTGAGTCAGGCAGGAGCCCGCGTGAAGATCATG  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct  371  ACTACTACTGGGAAAGAGATTACCGAAGGGCGCTCTGCAGGCTGAGTCAGGCAGGAGCCCGCGTGACGATCATG  444

Query  445  GACTATGAAGAATTTGCATACTGCTGGGAAAACTTTGTGTACAATGAAGGTCAGCAATTCATGCCTTGGTACAA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GACTATGAAGAATTTGCATACTGCTGGGAAAACTTTGTGTACAATGAAGGTCAGCAATTCATGCCTTGGTACAA  518

Query  519  ATTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGAGATTCTCAGGCTA------------AGA----  576
            |||||||||||||||||||||||||||||||||||||||||||||||||| |.||            |||    
Sbjct  519  ATTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGAGATTCTCA-GATACCTGATGGATCCAGACACA  591

Query  577  ---------ATCTT---------CTCTGTGG--CTTTTACGGCCGCC---------------ATGCGGAGCTGC  615
                     |.|||         |.||.|||  |||..|||| ||||               |||.||.|..||
Sbjct  592  TTCACTTTCAACTTTAATAATGACCCTTTGGTCCTTCGACGG-CGCCAGACCTACTTGTGCTATGAGGTGGAGC  664

Query  616  GCTTCT------TGG-ACCTGGTTCC---------------------TTCTTTGC----AGTTGGACCCGGCCC  657
            ||  ||      ||| ||||||.|||                     ||||.|||    |||||||||||||||
Sbjct  665  GC--CTGGACAATGGCACCTGGGTCCTGATGGACCAGCACATGGGCTTTCTATGCAACGAGTTGGACCCGGCCC  736

Query  658  AGATCTACAGGGTCACTTGGTTCATCTCCTGGAGCCCCTGCTTCTCCTGGGGCTGTGCCGGGGAAGTGCGTGCG  731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  737  AGATCTACAGGGTCACTTGGTTCATCTCCTGGAGCCCCTGCTTCTCCTGGGGCTGTGCCGGGGAAGTGCGTGCG  810

Query  732  TTCCTTCAGGAGAACACACACG----------------------------------------------------  753
            ||||||||||||||||||||||                                                    
Sbjct  811  TTCCTTCAGGAGAACACACACGTGAGACTGCGCATCTTCGCTGCCCGCATCTATGATTACGACCCCCTATATAA  884

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct  885  GGAGGCGCTGCAAATGCTGCGGGATGCTGGGGCCCAAGTCTCCATCATGACCTACGATGAGTTTGAGTACTGCT  958

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct  959  GGGACACCTTTGTGTACCGCCAGGGATGTCCCTTCCAGCCCTGGGATGGACTAGAGGAGCACAGCCAAGCCCTG  1032

Query  754  ---------------------------------------  753
                                                   
Sbjct 1033  AGTGGGAGGCTGCGGGCCATTCTCCAGAATCAGGGAAAC  1071

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.