Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11431
- Subject:
- XM_006496875.1
- Aligned Length:
- 3180
- Identities:
- 1578
- Gaps:
- 1392
Alignment
Query 1 ATGGAGGTCAGAGCTTCATTACA--------------------------------------------------- 23
|||||||||||||||||.||.||
Sbjct 1 ATGGAGGTCAGAGCTTCGTTCCAGAAGGTTAGTGGGTCATCTGATTCTGTGGCCACACTGAACAGTGAAGAATT 74
Query 24 ------------------------------------------------------------GAAGATAGTTTCTA 37
||||||||.|||.|
Sbjct 75 TGTTTTGGTTTCTCAGCACACAGATGCCACTTCTATAAAGGATGATGGGAAGCCACAGCTGAAGATAGCTTCCA 148
Query 38 ATGGTGATGAACAATTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTT 111
||||||||||.||.||||||||||||||||||||||||||||||||||||||||||.|.|.||||.||||.|.|
Sbjct 149 ATGGTGATGAGCAGTTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAGGACAAAGCGGTCTACCT 222
Query 112 GTTGATTGTCAGAGTTCCAGTGAGATTTCAGACCATTCGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCC 185
||||||||.||..|.||||||||||||||||||..|.|.|||||||||.|.||.|||||||||||||.||||||
Sbjct 223 GTTGATTGCCAAGGATCCAGTGAGATTTCAGACTGTCCCTTTGGAGATGTGCCGGCCAGCCAAACAACTAAGCC 296
Query 186 ATCTCTTCAGTTAATTTTGGATCCGTCTAACACAGAAATTTCTACACCCAGACCATCTTCTCCAGGTGGACTAC 259
..||||.|||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||.|..||.|.|
Sbjct 297 GCCTCTCCAGTTAATTTTGGATCCATCTAATACAGAAATTTCCACACCCAGACCATCTTCTCCAAGCAGATTTC 370
Query 260 CTGAAGAAGATAGTGTTTTATTTAATAAACTGACCTACTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAA 333
||||||||||.||||||.|.|||||.||.|||||.||||||||||||||||||||||||||||||||.|.||||
Sbjct 371 CTGAAGAAGACAGTGTTCTCTTTAACAAGCTGACATACTTAGGATGTATGAAGGTTTCTTCCCCACGCAGTGAA 444
Query 334 GTAGAGGCTTTACGGGCAATGGCAACCATGAAATCTTCCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACC 407
||.||||||||||||||.|||||.|||||||.|.||||||||||.|||||||||.|||||||.||||||||.||
Sbjct 445 GTGGAGGCTTTACGGGCCATGGCCACCATGAGAGCTTCCAGTCAGTACCCCTTTGCTGTTACTCTGTATGTGCC 518
Query 408 AAATGTTCCAGAAGGTTCTGTGAGAATTATAGACCAATCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATA 481
.||||||||||||||.|||||||||||.||||||||.||.|||||||||||||||||||||||||||||.||||
Sbjct 519 CAATGTTCCAGAAGGATCTGTGAGAATCATAGACCAGTCAAGCAATGTGGAGATAGCATCTTTTCCAATTTATA 592
Query 482 AGGTGTTATTCTGTGCACGTGGACATGACGGAACAACAGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCAT 555
|.|||.|.||||||||||||||.|||||.||.|||.|.||||||||||||||||||||||||||||||||.|||
Sbjct 593 AAGTGCTTTTCTGTGCACGTGGGCATGATGGGACAGCCGAGAGCAATTGCTTTGCATTTACAGAGAGTTCTCAT 666
Query 556 GGTTCGGAAGAATTTCAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTT 629
||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.|||||
Sbjct 667 GGCTCAGAAGAATTTCAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTATATAGTTT 740
Query 630 CTGTACAGCATTCAAACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTG 703
|||.||.|||||||||||||||||||||||||||||||||||||||||||||||.||.||.||.||||||||||
Sbjct 741 CTGCACTGCATTCAAACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTCATCCCGACTCCCGACAGTG 814
Query 704 ATGTGTTTACCTTCAGTGTCTCCTTGGAGGTAAAAGAAGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAG 777
|||||||||||||||||||.|||||||||||.||||||||.||||||||||||||||||||.||.|||||||||
Sbjct 815 ATGTGTTTACCTTCAGTGTTTCCTTGGAGGTCAAAGAAGATGATGGAAAAGGAAACTTTAGTCCCGTGCCTAAG 888
Query 778 GATAGAGATAAATTTTATTTCAAATTAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTC 851
||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct 889 GATAGAGATAAATTTTATTTCAAAATAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTTCAGCAACTGTC 962
Query 852 TAACAAAGAATTAGCTATTGAAAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACA 925
|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TAACAAAGAATTAGCTATTGAGAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACA 1036
Query 926 TGCATTTACTGGATATGGAATCCATGGGAAAGAGCTATGATGGGAGAGCTTATGTCATCACTGGCATGTGGAAC 999
|||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||.||||||||||||
Sbjct 1037 TGCATTTACTGGATATGGAGTCCATGGGAAAGAGCTATGATGGGAGAGCTTACGTCATCACGGGCATGTGGAAC 1110
Query 1000 CCCAATGCACCAGTATTTCTGGCACTTAACGAGGAAACCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGT 1073
|||||.||||||.||||||||||.|||||.||.|||||.||.||||||||.|..||.||||||||.||.|||||
Sbjct 1111 CCCAACGCACCAATATTTCTGGCTCTTAATGAAGAAACGCCCAAAGATAAACGGGTGTACATGACCGTTGCAGT 1184
Query 1074 GGATATGGTAGTCACAGAGGTGGTGGAGCCTGTTCGCTTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAA 1147
|||.|||||.||||||||||||||||||||.||.||.||||||||||||||||||||.|||||.||||||||||
Sbjct 1185 GGACATGGTGGTCACAGAGGTGGTGGAGCCAGTCCGTTTTCTCCTGGAGACAGTAGTTCGTGTATACCCTGCAA 1258
Query 1148 ATGAGCGATTTTGGTATTTCAGCAGAAAGACTTTCACAGAGACCTTCTTCATGAGATTGAAACAGTCTGAGGGA 1221
|||||.|||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||
Sbjct 1259 ATGAGAGATTTTGGTATTTCAGCAGAAAGACTTTCACAGAGACTTTCTTCATGAGGTTGAAACAGTCTGAGGGA 1332
Query 1222 AAAGGCCATACCAATGCTGGAGATGCAATATATGAGGTGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACC 1295
||||||||.|.||.|||||||||||||||||||||.|||||||||||.|||.||||.||||||||||||||.||
Sbjct 1333 AAAGGCCACAGCAGTGCTGGAGATGCAATATATGAAGTGGTGAGTCTGCAGAGAGAATCTGACAAGGAGGAGCC 1406
Query 1296 AGTCACTCCTACTAGTGGAGGGGGTCCAATGTCACCCCAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAAC 1369
..||||.||||||||||..|||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||
Sbjct 1407 CATCACCCCTACTAGTGCTGGGGGCCCAATGTCACCACAGGAGGATGAAGCAGAAGAGGAGAGTGATAATGAAC 1480
Query 1370 TCTCAAGTGGAACAGGTGATGTGTCTAAGGATTGTCCTGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGA 1443
||||.||||||||||||||||||||.||.||.||||||||||||||.||.||||||||||||||.|||.|||||
Sbjct 1481 TCTCGAGTGGAACAGGTGATGTGTCAAAAGACTGTCCTGAGAAGATTCTCTATTCTTGGGGAGAATTGTTAGGA 1554
Query 1444 AAATGGCACAGTAACCTTGGTGCACGACCGAAAGGGCTGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATT 1517
|.||||||||.|||||||||||..|||||.|||||.||.|..||..||||.|||||||||||.|||||.|||.|
Sbjct 1555 AGATGGCACAATAACCTTGGTGGCCGACCAAAAGGACTATTCACCTTGGTAAAGAGTGGTGTTCCTGAGGCACT 1628
Query 1518 GAGGGCAGAGGTATGGCAGTTATTGGCAGGCTGCCATGACAACCAGGCAATGCTGGATAGATACCGAATTCTTA 1591
.||||||||.||||||||..||||.|||||.|||||||||||.||||.|||||||||||.|||||||||.||||
Sbjct 1629 AAGGGCAGAAGTATGGCAACTATTAGCAGGATGCCATGACAATCAGGAAATGCTGGATAAATACCGAATCCTTA 1702
Query 1592 TCACAAAGCA------ACAGATGAAATTTAGTCTTACACCGAGACAGACTATTCACC----------------- 1642
||||||||.| ||||..||...||| |||| .||||| ||||||.|
Sbjct 1703 TCACAAAGGACTCTGCACAGGAGAGTGTTA---TTAC-TCGAGA-----TATTCATCGTACATTTCCTGCACAC 1767
Query 1643 ---TAGTT-AAATA---TGAAGGGTCTATGAAGGTCTCCATGACACCCTGTA-ACCAGCTGCAATTTGACATTA 1708
||.|| |||.| ||.||| .||.||| ||.||..||||.|| |..|.|||||| |.|.|
Sbjct 1768 GATTACTTCAAAGACACTGGAGG-----CGATGGT---CAAGAATCCCTTTACAAAATCTGCAA---GGCCT-- 1828
Query 1709 GACTTGATGTTC--TGATTACTT---ATACT-------------TTTTGTTTTAGTTCCTTTCCT--------- 1755
|||.|.||||| |||..||.| .|||| ||||.|| |.|.||.|.||
Sbjct 1829 -ACTCGGTGTTCGATGAAGACATTGGGTACTGTCAAGGACAGTCTTTTCTT---GCTGCTGTACTACTGTTGCA 1898
Query 1756 ----------GAGCCTGAATTGT-----------ACAAATATGT------------------CCTAAAACACCA 1790
||||..|.|||.| ||.|.||||| .||.|.|||..|
Sbjct 1899 TATGCCAGAGGAGCAAGCATTCTGTGTTTTGGTGACTATTATGTATGGTTATAAATTGAGAGACTTATACAGAA 1972
Query 1791 AC--TTATTAAGAGGCTT-AATGC-----CTGT----------------------------------------- 1815
|| ||.|.|||| .||| |.||| ||.|
Sbjct 1973 ACAATTTTGAAGA-TCTTCATTGCAAATTCTATCAACTTGAGAAACTAATGCAGGAACAGCTGCCAGACCTGTA 2045
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2046 CAGCCACTTCTGTGATCTGAACCTGGAAGCTCATATGTATGCATCCCAGTGGTTCCTCACTCTCTTTACTGCCA 2119
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2120 AGTTTCCACTCTGCATGGTGTTCCACATCATTGACCTTCTGCTGTGTGAGGGTTTGAATATAATCTTTCATGTA 2193
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2194 GCTTTGGCTCTTCTAAAGACCTCAAAGGAAGACCTCCTTCAGGCTGATTTTGAAGGTGCTTTGAAGTTTTTCAG 2267
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2268 AGTTCAGCTTCCAAAGAGATACCGGGCAGAGGAGAATGCAAGAAGATTGATGGAACAGGCTTGCAATATTAAAG 2341
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2342 TACCAACCAAAAAGCTGAAGAAATATGAAAAAGAATATCAGGCGATGCGGGAGAATCAGCTGCAGCAGGAGGAC 2415
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2416 CCAATGGATAGATACAAGAGGGAGAACCGAAGATTACAGGAGGCCAGCATGAGGTTGGAACAAGAAAATGATGA 2489
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2490 CCTTGCCCATGAACTAGTGACAAGCAAAATTGCTCTGCGGAATGACTTGGATCAGGCAGAAGACAAGGCTGATG 2563
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2564 TGCTGAATAAGGAGCTCCTCTTTACCAAGCAGAGGTTGGTGGAGACTGAGGAAGAGAAGAGGAAGCAAGAGGAG 2637
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2638 GAGACCGCCCAGCTAAAAGAAGTCTTCAGGAAACAGTTAGAAAAGGCAGAATATGAGATAAAGAAGACAACAGC 2711
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2712 TATCATTGCTGAGTATAAACAGATATGTTCTCAATTAAGTACCAGGCTGGAGAAACAGCAAGCAGCCAGCAAGG 2785
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2786 AGGAGCTAGAAGCAGTAAAGGGTAAGATGATGGCATGCAAACACTGCAGTGATATCTTCAGCAAGGAAGGAGCT 2859
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2860 TTAAAGCCAGTGGCCGTAAATAGAGAGGACCAGGGACTTGAAGCAGATGATGAAAAGGACTCACTTAAGAAGCA 2933
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2934 GCTGAGGGAGATGGAACTGGAACTGGCACAGACCAAACTGCAGCTGGTGGAAGCCAAGTGCAAAATCCAGGAAC 3007
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 3008 TTGAGCATCAGAGAGGAGCGCTTATGAATGAAATACAAGCTGCAAAAAACTCTTGGTTTAGTAAAACCCTGAAC 3081
Query 1816 ------------------------------------------------------------------------ 1815
Sbjct 3082 TCTATCAAAACAGCCACAGGCACTCAGCCACTACAGCCGCCACAGGCTCCCCAGCCACCCAAGGAGAGCACA 3153
