Construct: ORF ccsbBroad304_11431

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017768.1_s304c1, BRDN0000403826
Derived from:
ccsbBroadEn_11431
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RABGAP1L (9910)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11431
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9910 RABGAP1L RAB GTPase activating prote... NM_001366445.1 99.8% 100% 123A>G;1191T>C
2 human 9910 RABGAP1L RAB GTPase activating prote... NM_001366447.1 73% 66.7% (many diffs)
3 human 9910 RABGAP1L RAB GTPase activating prote... NM_014857.4 69.7% 63.8% (many diffs)
4 human 9910 RABGAP1L RAB GTPase activating prote... NM_001366448.1 57.9% 53.2% (many diffs)
5 human 9910 RABGAP1L RAB GTPase activating prote... XM_005245681.2 56.2% 51.7% (many diffs)
6 human 9910 RABGAP1L RAB GTPase activating prote... NM_001366446.1 54.3% 50% (many diffs)
7 human 9910 RABGAP1L RAB GTPase activating prote... XM_011510223.2 54.3% 50% (many diffs)
8 human 9910 RABGAP1L RAB GTPase activating prote... XR_922004.1 54.3% (many diffs)
9 human 9910 RABGAP1L RAB GTPase activating prote... NM_001366449.1 38.8% 37.2% (many diffs)
10 human 9910 RABGAP1L RAB GTPase activating prote... NR_158982.1 19.5% (many diffs)
11 mouse 29809 Rabgap1l RAB GTPase activating prote... XM_006496879.3 77.1% 76.8% (many diffs)
12 mouse 29809 Rabgap1l RAB GTPase activating prote... NM_013862.5 63.8% 59.8% (many diffs)
13 mouse 29809 Rabgap1l RAB GTPase activating prote... XM_006496877.2 51.4% 48.5% (many diffs)
14 mouse 29809 Rabgap1l RAB GTPase activating prote... XM_006496876.1 50.8% 47.4% (many diffs)
15 mouse 29809 Rabgap1l RAB GTPase activating prote... XM_006496875.1 49.6% 46.8% (many diffs)
16 mouse 29809 Rabgap1l RAB GTPase activating prote... XM_006496878.3 49.5% 46.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1881
ORF length:
1815
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga ggtcagagct tcattacaga agatagtttc taatggtgat gaacaattgg
121aaaaagccat ggaagagatt ttgagagatt ccgagaaaag gccaagcagt cttcttgttg
181attgtcagag ttccagtgag atttcagacc attcgtttgg agatattcca gccagccaaa
241caaataagcc atctcttcag ttaattttgg atccgtctaa cacagaaatt tctacaccca
301gaccatcttc tccaggtgga ctacctgaag aagatagtgt tttatttaat aaactgacct
361acttaggatg tatgaaggtt tcttccccac gtaatgaagt agaggcttta cgggcaatgg
421caaccatgaa atcttccagt caatacccct ttcctgttac cctgtatgta ccaaatgttc
481cagaaggttc tgtgagaatt atagaccaat ccagcaatgt ggagatagca tcttttccaa
541tctataaggt gttattctgt gcacgtggac atgacggaac aacagagagc aattgctttg
601catttacaga gagttcccat ggttcggaag aatttcagat acatgttttc tcctgtgaaa
661ttaaagaggc agtaagcaga attttgtaca gtttctgtac agcattcaaa cgttcttcca
721gacaagtgtc tgatgttaaa gactcagtta ttcctacccc cgacagtgat gtgtttacct
781tcagtgtctc cttggaggta aaagaagacg atggaaaagg aaactttagc cctgtgccta
841aggatagaga taaattttat ttcaaattaa agcaaggaat agagaagaag gttgtgatta
901cagtgcagca actttctaac aaagaattag ctattgaaag atgttttgga atgttattaa
961gcccaggtcg aaacgtgaag aacagtgaca tgcatttact ggatatggaa tccatgggaa
1021agagctatga tgggagagct tatgtcatca ctggcatgtg gaaccccaat gcaccagtat
1081ttctggcact taacgaggaa accccaaaag ataagcaagt atacatgact gtggcagtgg
1141atatggtagt cacagaggtg gtggagcctg ttcgctttct cctggagaca gtagtccgtg
1201tgtaccctgc aaatgagcga ttttggtatt tcagcagaaa gactttcaca gagaccttct
1261tcatgagatt gaaacagtct gagggaaaag gccataccaa tgctggagat gcaatatatg
1321aggtggtgag tctacagcga gagtctgaca aggaggaacc agtcactcct actagtggag
1381ggggtccaat gtcaccccag gatgatgaag cagaagagga gagtgataat gaactctcaa
1441gtggaacagg tgatgtgtct aaggattgtc ctgagaagat cctgtattct tggggagagt
1501tgctaggaaa atggcacagt aaccttggtg cacgaccgaa agggctgtct actctggtga
1561agagtggtgt ccctgaagca ttgagggcag aggtatggca gttattggca ggctgccatg
1621acaaccaggc aatgctggat agataccgaa ttcttatcac aaagcaacag atgaaattta
1681gtcttacacc gagacagact attcacctag ttaaatatga agggtctatg aaggtctcca
1741tgacaccctg taaccagctg caatttgaca ttagacttga tgttctgatt acttatactt
1801tttgttttag ttcctttcct gagcctgaat tgtacaaata tgtcctaaaa caccaactta
1861ttaagaggct taatgcctgt tacccaactt tcttgtacaa agtggttggt aagcctatcc
1921ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1981ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)

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