Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11482
- Subject:
- NM_001301865.1
- Aligned Length:
- 1554
- Identities:
- 1012
- Gaps:
- 393
Alignment
Query 1 ATGGATGCTGATGAGGGTCAAGACATGTCCCAAGTTTCAGGGAAGGAAAGCCCCCCTGTAAGCGATACTCCAGA 74
|||||||..||||||||||||||||||||||||||||||||.|||||.||||||||.||.||.||.||||||||
Sbjct 1 ATGGATGTCGATGAGGGTCAAGACATGTCCCAAGTTTCAGGAAAGGAGAGCCCCCCAGTCAGTGACACTCCAGA 74
Query 75 TGAGGGCGATGAGCCCATGCCGATCCCCGAGGACCTCTCCACCACCTCGGGAGGACAGCAAAGCTCCAAGAGTG 148
|||.||.||||||||||||||..||||.||||||||.|||||.|||||.||||.||||||.|.|||||||||||
Sbjct 75 TGAAGGGGATGAGCCCATGCCTGTCCCTGAGGACCTGTCCACTACCTCTGGAGCACAGCAGAACTCCAAGAGTG 148
Query 149 ACAGAGTCGTGGCCAGTAATGTTAAAGTAGAGACTCAGAGTGATGAAGAGAATGGGCGTGCCTGTGAAATGAAT 222
|
Sbjct 149 A------------------------------------------------------------------------- 149
Query 223 GGGGAAGAATGTGCGGAGGATTTACGAATGCTTGATGCCTCGGGAGAGAAAATGAATGGCTCCCACAGGGACCA 296
Sbjct 150 -------------------------------------------------------------------------- 149
Query 297 AGGCAGCTCGGCTTTGTCGGGAGTTGGAGGCATTCGACTTCCTAACGGAAAACTAAAGTGTGATATCTGTGGGA 370
|.|||||||
Sbjct 150 ------------------------TCGAGGCAT----------------------------------------- 158
Query 371 TCATTTGCATCGGGCCCAATGTGCTCATGGTTCACAAAAGAAGCCACACTGGAGAACGGCCCTTCCAGTGCAAT 444
.||.||||||||.|||||||||||.
Sbjct 159 -------------------------------------------------GGGTGAACGGCCTTTCCAGTGCAAC 183
Query 445 CAGTGCGGGGCCTCATTCACCCAGAAGGGCAACCTGCTCCGGCACATCAAGCTGCATTCCGGGGAGAAGCCCTT 518
|||||.||||||||.||.||||||||.||||||||.||.|||||||||||||||||.||.||.|||||||||||
Sbjct 184 CAGTGTGGGGCCTCCTTTACCCAGAAAGGCAACCTCCTGCGGCACATCAAGCTGCACTCGGGTGAGAAGCCCTT 257
Query 519 CAAATGCCACCTCTGCAACTACGCCTGCCGCCGGAGGGACGCCCTCACTGGCCACCTGAGGACGCACTCC---- 588
|||||||||.||.||||||||.||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 258 CAAATGCCATCTTTGCAACTATGCCTGCCGCCGGAGGGACGCCCTCACCGGCCACCTGAGGACGCACTCCGTTG 331
Query 589 -------------------------------------------------------------------------- 588
Sbjct 332 GTAAGCCTCACAAATGTGGATATTGTGGCCGGAGCTATAAACAGCGAAGCTCTTTAGAGGAGCATAAAGAGCGA 405
Query 589 ---------------------------------------------GTCATTAAAGAAGAAACTAATCACAGTGA 617
||||||||.|||||||||||.||||..||
Sbjct 406 TGCCACAACTACTTGGAAAGCATGGGCCTTCCGGGCATGTACCCAGTCATTAAGGAAGAAACTAACCACAACGA 479
Query 618 AATGGCAGAAGACCTGTGCAAGATAGGATCAGAGAGATCTCTCGTGCTGGACAGACTAGCAAGTAACGTCGCCA 691
.|||||||||||||||||||||||||||.|||||||.||.||.||.||||||||.||.|||||.||.|||||||
Sbjct 480 GATGGCAGAAGACCTGTGCAAGATAGGAGCAGAGAGGTCCCTTGTCCTGGACAGGCTGGCAAGCAATGTCGCCA 553
Query 692 AACGTAAGAGCTCTATGCCTCAGAAATTTCTTGGGGACAAGGGCCTGTCCGACACGCCCTACGACAGCAGCGCC 765
||||||||||||||||||||||||||||||||||.||||||.|||||||.||||.||||||.|| |||.|||
Sbjct 554 AACGTAAGAGCTCTATGCCTCAGAAATTTCTTGGAGACAAGTGCCTGTCAGACATGCCCTATGA---CAGTGCC 624
Query 766 AGCTACGAGAAGGAGAACGAAATGATGAAGTCCCACGTGATGGACCAAGCCATCAACAACGCCATCAACTACCT 839
|.|||.||||||||| ||.|||||||..|||||||||||||||||.|||||||||||.||||||||||||||
Sbjct 625 AACTATGAGAAGGAG---GATATGATGACATCCCACGTGATGGACCAGGCCATCAACAATGCCATCAACTACCT 695
Query 840 GGGGGCCGAGTCCCTGCGCCCGCTGGTGCAGACGCCCCCGGGCGGTTCCGAGGTGGTCCCGGTCATCAGCCCGA 913
||||||.||||||||||||||..||||||||||.|||||.||..|.|||||||||||.||.|||||||||.|.|
Sbjct 696 GGGGGCTGAGTCCCTGCGCCCATTGGTGCAGACACCCCCCGGTAGCTCCGAGGTGGTGCCAGTCATCAGCTCCA 769
Query 914 TGTACCAGCTGCACAAGCCGCTCGCGGAGGGCACCCCGCGCTCCAACCACTCGGCCCAGGACAGCGCCGTGGAG 987
|||||||||||||||||||.|.|.|.||.|||.||||.||.||||||||.||.||.||||| |||||||||.
Sbjct 770 TGTACCAGCTGCACAAGCCCCCCTCAGATGGCCCCCCACGGTCCAACCATTCAGCACAGGA---CGCCGTGGAT 840
Query 988 AACCTGCTGCTGCTCTCCAAGGCCAAGTTGGTGCCCTCGGAGCGCGAGGCGTCCCCGAGCAACAGCTGCCAAGA 1061
|||.||||||||||.|||||||||||||..|||.|.||||||||.|||||.|||||||||||||||||||||||
Sbjct 841 AACTTGCTGCTGCTGTCCAAGGCCAAGTCTGTGTCATCGGAGCGAGAGGCCTCCCCGAGCAACAGCTGCCAAGA 914
Query 1062 CTCCACGGACACCGAGAGCAACAACGAGGAGCAGCGCAGCGGTCTCATCTACCTGACCAACCACATCGCCCCGC 1135
||||||.||.||.|||||||||...|||||.|||||||||||.||.||||||||.||||||||||||..|||||
Sbjct 915 CTCCACAGATACAGAGAGCAACGCGGAGGAACAGCGCAGCGGCCTTATCTACCTAACCAACCACATCAACCCGC 988
Query 1136 ACGCGCGCAACGGGCTGTCGCTCAAGGAGGAGCACCGCGCCTACGACCTGCTGCGCGCCGCCTCCGAGAACTCG 1209
|.||.|||||.||||||.|.||||||||||||||.|||||||||||..|||||.|.||.|||||.|||||||||
Sbjct 989 ATGCACGCAATGGGCTGGCTCTCAAGGAGGAGCAGCGCGCCTACGAGGTGCTGAGGGCGGCCTCAGAGAACTCG 1062
Query 1210 CAGGACGCGCTCCGCGTGGTCAGCACCAGCGGGGAGCAGATGAAGGTGTACAAGTGCGAACACTGCCGGGTGCT 1283
|||||.||..||||.|||||||||||.||.||.||||||.||||||||||||||||||||||||||||.|||||
Sbjct 1063 CAGGATGCCTTCCGTGTGGTCAGCACGAGTGGCGAGCAGCTGAAGGTGTACAAGTGCGAACACTGCCGCGTGCT 1136
Query 1284 CTTCCTGGATCACGTCATGTACACCATCCACATGGGCTGCCACGGCTTCCGTGATCCTTTTGAGTGCAACATGT 1357
|||||||||||||||||||||.|||||.||||||||||||||.|||||.||.|||||.||||||||.|||||||
Sbjct 1137 CTTCCTGGATCACGTCATGTATACCATTCACATGGGCTGCCATGGCTTTCGGGATCCCTTTGAGTGTAACATGT 1210
Query 1358 GCGGCTACCACAGCCAGGACCGGTACGAGTTCTCGTCGCACATAACGCGAGGGGAGCACCGCTTCCACATGAGC 1431
|.||.||.||||||||||||.|||||||||||||.||.||.||.|||||.||||||||.||.|.||||.|||||
Sbjct 1211 GTGGTTATCACAGCCAGGACAGGTACGAGTTCTCATCCCATATCACGCGGGGGGAGCATCGTTACCACCTGAGC 1284