Construct: ORF ccsbBroad304_11482

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016074.1_s304c1, BRDN0000406738
Derived from:
ccsbBroadEn_11482
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IKZF1 (10320)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11482
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001220765.3 100% 100%
2 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001291837.2 100% 100%
3 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515070.2 95.2% 95.2% 1_72del
4 human 10320 IKZF1 IKAROS family zinc finger 1 NM_006060.6 91.9% 91.9% 589_714del
5 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515068.2 91.9% 91.9% 589_714del
6 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515069.2 91.9% 91.9% 589_714del
7 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515067.3 91.5% 91.3% 1_72del;233_292del
8 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001220768.2 90.5% 90.5% 588_589ins135
9 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515062.2 88.4% 88.3% 161_220del;649_774del
10 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515063.2 88.4% 88.3% 161_220del;649_774del
11 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515064.3 88.4% 88.3% 161_220del;649_774del
12 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515065.2 88.4% 88.3% 161_220del;649_774del
13 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515066.2 88.4% 88.3% 161_220del;649_774del
14 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515061.3 87.8% 87.8% 1_72del;661_786del
15 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515060.2 86.8% 86.7% 1_30del;191_250del;679_804del
16 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515058.2 84.7% 84.5% 1_72del;233_292del;721_846del
17 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515059.3 82.9% 82.7% (many diffs)
18 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001291839.2 81.7% 81.7% 159_160ins261
19 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001220770.2 79.6% 79.6% 159_160ins261;433_434ins30
20 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001220771.2 78.8% 78.8% 419_420ins303
21 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515073.2 77.9% 76.3% (many diffs)
22 human 10320 IKZF1 IKAROS family zinc finger 1 XM_017011667.1 77.9% 76.3% (many diffs)
23 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515077.2 77.8% 77.8% 1_72del;231_232ins261
24 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001291841.1 77.1% 73.5% (many diffs)
25 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515078.2 75.8% 75.8% 1_72del;231_232ins261;505_506ins30
26 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001291838.2 75.1% 75.1% 159_160ins261;328_453del
27 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515075.2 75.1% 75.1% 159_160ins261;328_453del
28 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515076.2 75.1% 75.1% 159_160ins261;328_453del
29 human 10320 IKZF1 IKAROS family zinc finger 1 XM_017011668.1 75.1% 75.1% 159_160ins261;328_453del
30 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001291842.1 75.1% 71.4% (many diffs)
31 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515071.2 74.5% 72.9% (many diffs)
32 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001220767.2 73.2% 73.2% 159_160ins261;328_453del;559_560ins30
33 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515072.2 71.8% 71.8% 1_72del;231_232ins261;400_525del
34 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001291843.1 70% 70% 159_160ins429
35 human 10320 IKZF1 IKAROS family zinc finger 1 XM_011515074.2 69.9% 69.9% (many diffs)
36 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001291844.1 67.9% 67.9% 159_160ins429;265_266ins30
37 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001291840.1 60.5% 60.5% 159_160ins564
38 human 10320 IKZF1 IKAROS family zinc finger 1 XM_017011669.1 46.8% 46.6% (many diffs)
39 human 10320 IKZF1 IKAROS family zinc finger 1 XM_017011670.1 46.8% 46.6% (many diffs)
40 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001291846.2 14.9% 10.9% (many diffs)
41 human 10320 IKZF1 IKAROS family zinc finger 1 NM_001291847.2 14.9% 10.9% (many diffs)
42 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243712.2 88.4% 92.4% (many diffs)
43 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243706.2 84.9% 88.9% (many diffs)
44 mouse 22778 Ikzf1 IKAROS family zinc finger 1 NM_001025597.2 81.4% 85.1% (many diffs)
45 mouse 22778 Ikzf1 IKAROS family zinc finger 1 NM_001301863.1 81.4% 85.1% (many diffs)
46 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_006514676.3 81.4% 85.1% (many diffs)
47 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243707.2 80.4% 79.7% (many diffs)
48 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243714.2 80% 83.4% (many diffs)
49 mouse 22778 Ikzf1 IKAROS family zinc finger 1 NM_001301868.1 79.5% 83.2% (many diffs)
50 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243703.2 79.5% 83.2% (many diffs)
51 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243700.2 78.4% 82.1% (many diffs)
52 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243708.1 78.4% 82.1% (many diffs)
53 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243709.1 78.4% 82.1% (many diffs)
54 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243710.2 78.4% 82.1% (many diffs)
55 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243711.1 78.4% 82.1% (many diffs)
56 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243713.2 76.7% 80.2% (many diffs)
57 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243701.2 76.5% 80.2% (many diffs)
58 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243704.1 76.1% 79.7% (many diffs)
59 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243705.1 76.1% 79.7% (many diffs)
60 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243702.1 75% 78.6% (many diffs)
61 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_006514680.3 74.9% 76.6% (many diffs)
62 mouse 22778 Ikzf1 IKAROS family zinc finger 1 NM_001301866.1 70.7% 74.4% (many diffs)
63 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243717.1 70.7% 74.4% (many diffs)
64 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243718.1 68.6% 72.3% (many diffs)
65 mouse 22778 Ikzf1 IKAROS family zinc finger 1 NM_001301865.1 65.1% 68.5% (many diffs)
66 mouse 22778 Ikzf1 IKAROS family zinc finger 1 NM_009578.3 65.1% 68.5% (many diffs)
67 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243715.1 65.1% 68.5% (many diffs)
68 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_011243716.1 63.1% 66.6% (many diffs)
69 mouse 22778 Ikzf1 IKAROS family zinc finger 1 XM_006514682.2 62.2% 65.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1497
ORF length:
1431
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga tgctgatgag ggtcaagaca tgtcccaagt ttcagggaag gaaagccccc
121ctgtaagcga tactccagat gagggcgatg agcccatgcc gatccccgag gacctctcca
181ccacctcggg aggacagcaa agctccaaga gtgacagagt cgtggccagt aatgttaaag
241tagagactca gagtgatgaa gagaatgggc gtgcctgtga aatgaatggg gaagaatgtg
301cggaggattt acgaatgctt gatgcctcgg gagagaaaat gaatggctcc cacagggacc
361aaggcagctc ggctttgtcg ggagttggag gcattcgact tcctaacgga aaactaaagt
421gtgatatctg tgggatcatt tgcatcgggc ccaatgtgct catggttcac aaaagaagcc
481acactggaga acggcccttc cagtgcaatc agtgcggggc ctcattcacc cagaagggca
541acctgctccg gcacatcaag ctgcattccg gggagaagcc cttcaaatgc cacctctgca
601actacgcctg ccgccggagg gacgccctca ctggccacct gaggacgcac tccgtcatta
661aagaagaaac taatcacagt gaaatggcag aagacctgtg caagatagga tcagagagat
721ctctcgtgct ggacagacta gcaagtaacg tcgccaaacg taagagctct atgcctcaga
781aatttcttgg ggacaagggc ctgtccgaca cgccctacga cagcagcgcc agctacgaga
841aggagaacga aatgatgaag tcccacgtga tggaccaagc catcaacaac gccatcaact
901acctgggggc cgagtccctg cgcccgctgg tgcagacgcc cccgggcggt tccgaggtgg
961tcccggtcat cagcccgatg taccagctgc acaagccgct cgcggagggc accccgcgct
1021ccaaccactc ggcccaggac agcgccgtgg agaacctgct gctgctctcc aaggccaagt
1081tggtgccctc ggagcgcgag gcgtccccga gcaacagctg ccaagactcc acggacaccg
1141agagcaacaa cgaggagcag cgcagcggtc tcatctacct gaccaaccac atcgccccgc
1201acgcgcgcaa cgggctgtcg ctcaaggagg agcaccgcgc ctacgacctg ctgcgcgccg
1261cctccgagaa ctcgcaggac gcgctccgcg tggtcagcac cagcggggag cagatgaagg
1321tgtacaagtg cgaacactgc cgggtgctct tcctggatca cgtcatgtac accatccaca
1381tgggctgcca cggcttccgt gatccttttg agtgcaacat gtgcggctac cacagccagg
1441accggtacga gttctcgtcg cacataacgc gaggggagca ccgcttccac atgagctacc
1501caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
1561ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
1621tta

Download FASTA (ORF) (Full)