Construct: ORF ccsbBroad304_11482
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016074.1_s304c1, BRDN0000406738
- Derived from:
- ccsbBroadEn_11482
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IKZF1 (10320)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11482
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001220765.3 | 100% | 100% | |
| 2 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001291837.2 | 100% | 100% | |
| 3 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515070.2 | 95.2% | 95.2% | 1_72del |
| 4 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_006060.6 | 91.9% | 91.9% | 589_714del |
| 5 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515068.2 | 91.9% | 91.9% | 589_714del |
| 6 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515069.2 | 91.9% | 91.9% | 589_714del |
| 7 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515067.3 | 91.5% | 91.3% | 1_72del;233_292del |
| 8 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001220768.2 | 90.5% | 90.5% | 588_589ins135 |
| 9 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515062.2 | 88.4% | 88.3% | 161_220del;649_774del |
| 10 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515063.2 | 88.4% | 88.3% | 161_220del;649_774del |
| 11 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515064.3 | 88.4% | 88.3% | 161_220del;649_774del |
| 12 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515065.2 | 88.4% | 88.3% | 161_220del;649_774del |
| 13 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515066.2 | 88.4% | 88.3% | 161_220del;649_774del |
| 14 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515061.3 | 87.8% | 87.8% | 1_72del;661_786del |
| 15 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515060.2 | 86.8% | 86.7% | 1_30del;191_250del;679_804del |
| 16 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515058.2 | 84.7% | 84.5% | 1_72del;233_292del;721_846del |
| 17 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515059.3 | 82.9% | 82.7% | (many diffs) |
| 18 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001291839.2 | 81.7% | 81.7% | 159_160ins261 |
| 19 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001220770.2 | 79.6% | 79.6% | 159_160ins261;433_434ins30 |
| 20 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001220771.2 | 78.8% | 78.8% | 419_420ins303 |
| 21 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515073.2 | 77.9% | 76.3% | (many diffs) |
| 22 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_017011667.1 | 77.9% | 76.3% | (many diffs) |
| 23 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515077.2 | 77.8% | 77.8% | 1_72del;231_232ins261 |
| 24 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001291841.1 | 77.1% | 73.5% | (many diffs) |
| 25 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515078.2 | 75.8% | 75.8% | 1_72del;231_232ins261;505_506ins30 |
| 26 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001291838.2 | 75.1% | 75.1% | 159_160ins261;328_453del |
| 27 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515075.2 | 75.1% | 75.1% | 159_160ins261;328_453del |
| 28 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515076.2 | 75.1% | 75.1% | 159_160ins261;328_453del |
| 29 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_017011668.1 | 75.1% | 75.1% | 159_160ins261;328_453del |
| 30 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001291842.1 | 75.1% | 71.4% | (many diffs) |
| 31 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515071.2 | 74.5% | 72.9% | (many diffs) |
| 32 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001220767.2 | 73.2% | 73.2% | 159_160ins261;328_453del;559_560ins30 |
| 33 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515072.2 | 71.8% | 71.8% | 1_72del;231_232ins261;400_525del |
| 34 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001291843.1 | 70% | 70% | 159_160ins429 |
| 35 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_011515074.2 | 69.9% | 69.9% | (many diffs) |
| 36 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001291844.1 | 67.9% | 67.9% | 159_160ins429;265_266ins30 |
| 37 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001291840.1 | 60.5% | 60.5% | 159_160ins564 |
| 38 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_017011669.1 | 46.8% | 46.6% | (many diffs) |
| 39 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | XM_017011670.1 | 46.8% | 46.6% | (many diffs) |
| 40 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001291846.2 | 14.9% | 10.9% | (many diffs) |
| 41 | human | 10320 | IKZF1 | IKAROS family zinc finger 1 | NM_001291847.2 | 14.9% | 10.9% | (many diffs) |
| 42 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243712.2 | 88.4% | 92.4% | (many diffs) |
| 43 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243706.2 | 84.9% | 88.9% | (many diffs) |
| 44 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | NM_001025597.2 | 81.4% | 85.1% | (many diffs) |
| 45 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | NM_001301863.1 | 81.4% | 85.1% | (many diffs) |
| 46 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_006514676.3 | 81.4% | 85.1% | (many diffs) |
| 47 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243707.2 | 80.4% | 79.7% | (many diffs) |
| 48 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243714.2 | 80% | 83.4% | (many diffs) |
| 49 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | NM_001301868.1 | 79.5% | 83.2% | (many diffs) |
| 50 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243703.2 | 79.5% | 83.2% | (many diffs) |
| 51 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243700.2 | 78.4% | 82.1% | (many diffs) |
| 52 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243708.1 | 78.4% | 82.1% | (many diffs) |
| 53 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243709.1 | 78.4% | 82.1% | (many diffs) |
| 54 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243710.2 | 78.4% | 82.1% | (many diffs) |
| 55 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243711.1 | 78.4% | 82.1% | (many diffs) |
| 56 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243713.2 | 76.7% | 80.2% | (many diffs) |
| 57 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243701.2 | 76.5% | 80.2% | (many diffs) |
| 58 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243704.1 | 76.1% | 79.7% | (many diffs) |
| 59 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243705.1 | 76.1% | 79.7% | (many diffs) |
| 60 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243702.1 | 75% | 78.6% | (many diffs) |
| 61 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_006514680.3 | 74.9% | 76.6% | (many diffs) |
| 62 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | NM_001301866.1 | 70.7% | 74.4% | (many diffs) |
| 63 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243717.1 | 70.7% | 74.4% | (many diffs) |
| 64 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243718.1 | 68.6% | 72.3% | (many diffs) |
| 65 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | NM_001301865.1 | 65.1% | 68.5% | (many diffs) |
| 66 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | NM_009578.3 | 65.1% | 68.5% | (many diffs) |
| 67 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243715.1 | 65.1% | 68.5% | (many diffs) |
| 68 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_011243716.1 | 63.1% | 66.6% | (many diffs) |
| 69 | mouse | 22778 | Ikzf1 | IKAROS family zinc finger 1 | XM_006514682.2 | 62.2% | 65.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1497
- ORF length:
- 1431
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga tgctgatgag ggtcaagaca tgtcccaagt ttcagggaag gaaagccccc 121 ctgtaagcga tactccagat gagggcgatg agcccatgcc gatccccgag gacctctcca 181 ccacctcggg aggacagcaa agctccaaga gtgacagagt cgtggccagt aatgttaaag 241 tagagactca gagtgatgaa gagaatgggc gtgcctgtga aatgaatggg gaagaatgtg 301 cggaggattt acgaatgctt gatgcctcgg gagagaaaat gaatggctcc cacagggacc 361 aaggcagctc ggctttgtcg ggagttggag gcattcgact tcctaacgga aaactaaagt 421 gtgatatctg tgggatcatt tgcatcgggc ccaatgtgct catggttcac aaaagaagcc 481 acactggaga acggcccttc cagtgcaatc agtgcggggc ctcattcacc cagaagggca 541 acctgctccg gcacatcaag ctgcattccg gggagaagcc cttcaaatgc cacctctgca 601 actacgcctg ccgccggagg gacgccctca ctggccacct gaggacgcac tccgtcatta 661 aagaagaaac taatcacagt gaaatggcag aagacctgtg caagatagga tcagagagat 721 ctctcgtgct ggacagacta gcaagtaacg tcgccaaacg taagagctct atgcctcaga 781 aatttcttgg ggacaagggc ctgtccgaca cgccctacga cagcagcgcc agctacgaga 841 aggagaacga aatgatgaag tcccacgtga tggaccaagc catcaacaac gccatcaact 901 acctgggggc cgagtccctg cgcccgctgg tgcagacgcc cccgggcggt tccgaggtgg 961 tcccggtcat cagcccgatg taccagctgc acaagccgct cgcggagggc accccgcgct 1021 ccaaccactc ggcccaggac agcgccgtgg agaacctgct gctgctctcc aaggccaagt 1081 tggtgccctc ggagcgcgag gcgtccccga gcaacagctg ccaagactcc acggacaccg 1141 agagcaacaa cgaggagcag cgcagcggtc tcatctacct gaccaaccac atcgccccgc 1201 acgcgcgcaa cgggctgtcg ctcaaggagg agcaccgcgc ctacgacctg ctgcgcgccg 1261 cctccgagaa ctcgcaggac gcgctccgcg tggtcagcac cagcggggag cagatgaagg 1321 tgtacaagtg cgaacactgc cgggtgctct tcctggatca cgtcatgtac accatccaca 1381 tgggctgcca cggcttccgt gatccttttg agtgcaacat gtgcggctac cacagccagg 1441 accggtacga gttctcgtcg cacataacgc gaggggagca ccgcttccac atgagctacc 1501 caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt 1561 ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga 1621 tta