Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11524
- Subject:
- XM_011247177.1
- Aligned Length:
- 5430
- Identities:
- 1642
- Gaps:
- 3555
Alignment
Query 1 ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA 71
|||||||||||||||||||.|| |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct 1 ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA 74
Query 72 CAAAGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCCTCGTCTTCCTACAGGG 145
||||||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||||||||||||||||||
Sbjct 75 CAAAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGG 148
Query 146 AAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA------------------- 200
.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||
Sbjct 149 GAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAGGCCTGGAGCCAGAG 222
Query 201 --------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCCAGCCCTCTTCACTCGC 266
|.|||||||.||||..||||||||||||||.|||.|||||||.||.|||||||||||..||||.||
Sbjct 223 GACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGC 296
Query 267 TGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCCAGGATGCCACTTCCTCCAGTGCAG 340
||||||||||||.||||||||||||||||.||||.||.||||||||.||||||.||||||.||||||||..|||
Sbjct 297 TGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGGTGCCACCTCCTCCAGCTCAG 370
Query 341 CCCAGCCGGAGGTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGGGCAAGAAGGCACTGCC 408
|||.|.|.||||||||||||||.|||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 371 CCCCGTCTGAGGTAATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGGGCAAGAAGGCACTGCC 444
Query 409 AGACCTCCAACACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCTCT 482
|||.|||||.||.||||||||||.|||||||||||||.|||..||||.|||||..||.||||.|||||||||||
Sbjct 445 AGAACTCCAGCATCTCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCCCTGCTGCCTCACCTCT 518
Query 483 GACCTTCCCGACTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCGCG 556
||||||||||||.||.||||||||||||||||||||.|||||||||.|||||||||||||||||||||||.|.|
Sbjct 519 GACCTTCCCGACACTCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCACAGCCAGCCAGCCAGTG 592
Query 557 CCTCTGGCTCCTTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTGCC 630
|.|.|||||||.|..||||...||||||||||.|||||.| |||||||||||||||||||||||||||.|.|
Sbjct 593 CTTGTGGCTCCCTCTCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCCGCTGGTCCCTCCCGTC 663
Query 631 CCGGAGGACCTCCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTACT 704
|||||||||||||.|||||.|..|||||||||||||.||||||||||.||.||||||| .|||||||.||||
Sbjct 664 CCGGAGGACCTCCACAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG---GCAGTCCTTTACT 734
Query 705 AAATGAAGTTTCTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATCCG 775
|||.||||||||||||||||..||||.|||.||||||||||.||| ||||.|| ||||..|||||.||.|
Sbjct 735 AAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTCTG 805
Query 776 CCTATCCCTCCACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGACTC 849
||||.||||||||.||.||.|||||.|||||.|||||||||.||||.|||||||||||.||||||||.||||||
Sbjct 806 CCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGACTC 879
Query 850 AGTAGCCTTTCAGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCCAC 923
|||||.|||||||||||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|.|.|||.|||
Sbjct 880 AGTAGTCTTTCAGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCAC 953
Query 924 CTCACCTGGCAAGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTTAA 997
.||.||.||||.||||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.||||||.|.|
Sbjct 954 TTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGA 1027
Query 998 GCGATGTTTCCATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTATG 1071
|||||||.||.|..||||||||||||||||||||||||||.||.|||.||||.||||||||||||||.||||||
Sbjct 1028 GCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTATG 1101
Query 1072 TTTAAACAGATCCACAAACTGAACAG------------------------------------------------ 1097
||||||||||||||||||||||||||
Sbjct 1102 TTTAAACAGATCCACAAACTGAACAGAGACACTCCTGAGGAAAACCCTTATTTCCCTACGTACAAATTCCCCGA 1175
Query 1098 -------------------------------------------------------------------------- 1097
Sbjct 1176 GCTTCCAGAAATCCTGCAGAATTCTGAAGAGGACAGCTCTTACACTCCTACCTACCAGTTTCCTGCATCTACGC 1249
Query 1098 ----------------AGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAAGACACAAAATCT 1155
||||||||||||.|||.|..|.||.||..||||.||.||.|||||.||||||||.|||
Sbjct 1250 CTAGTCCTAAGTCAGAAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACACAAAGTCT 1323
Query 1156 CCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAAGAGGTCGGCCAC 1229
||||||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.||.||||||||.|||||
Sbjct 1324 CCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCAC 1397
Query 1230 ACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAACCCCCAGATAAGA 1303
|||.||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||||.|||||||||||||
Sbjct 1398 ACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGATAAGA 1471
Query 1304 AAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAGTCTTCCGTTCTG 1377
||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||||.|||||||||||.||.|||
Sbjct 1472 AAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTG 1545
Query 1378 ACCAACGAAAAGAT------------------------------------------------------------ 1391
|||||.||.|||||
Sbjct 1546 ACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTT 1619
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 1620 TTCGGAATTGGAGTTTGGGAGACCGCCTCCCAAAAAGATATGGGACTATACTCCTGGAGACTGCTCTATCCTTC 1693
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 1694 CTAGAGAGGATAGAAAGACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAG 1767
Query 1392 --------------------------------------------GAGCTCAGCCATCAGCCCTACTCCGGAAAT 1421
|||||||||..|||||||.|||||.||.||
Sbjct 1768 AAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGCTCAGCAGTCAGCCCGACTCCAGACAT 1841
Query 1422 TTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGAGGGAATCAGACGGGGCTCCTG 1495
|.|.||||||.|||||||||||||.|||||||||||||||||||||||||||||.|||||.||||||.|.||.|
Sbjct 1842 TACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCG 1915
Query 1496 GGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAAGGTGGTGACATCCCTCTTCAG 1569
|||.||||.|||||||||||||||||||.||.||.|||||.|||||||||||||||||.|||||||||||||||
Sbjct 1916 GGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAG 1989
Query 1570 GGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAA------------------------------ 1613
|||||.|||||||||||||||||.||||||||.|||||||||||
Sbjct 1990 GGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGTGGATCGTAAAGGCGGGAATGCTCACAT 2063
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2064 GATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGGCCCTGGGTGTAAGCACAAGA 2137
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2138 AACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCAAACCCAGGCTCTCTGCTCCC 2211
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2212 AGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAGAGCTGTGAGAACCTCTGTGT 2285
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2286 GTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGAGAACCTGCTCATGCGCTCCC 2359
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2360 GGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCACCAGCTCCAGGAGGCCCTGC 2433
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2434 CCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCACCAGATCAACCGAGCTGGCCT 2507
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2508 CTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGAAAGGAGCAGACTGACGTTAG 2581
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2582 CCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACACCGTGTCCTCCCGCATCACG 2655
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2656 GCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCTGGCCGGCTGAGCAAGTCCCC 2729
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2730 GACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCTCCTCGAGTCTACCAAGCTCC 2803
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2804 GTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGTGTAGCAATATGGCGGACCAC 2877
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2878 GCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGATGAGCTAGACCACTGCTCAAA 2951
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2952 TGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCCCAAACATCGCCTCAACAAGT 3025
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 3026 GCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATGAGCAGCAGTCGTCCAGGCAG 3099
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 3100 TCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATCCACCTGATGAGTCCCCTCCC 3173
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 3174 TTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTG 3247
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 3248 GCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGGGGAAACCCCTGGTCCCTGCT 3321
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 3322 CGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCTCTGGACAGACCCGCAGGCCT 3395
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 3396 GGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCATGGCTTGGACAGGAACAACA 3469
Query 1614 -------------------------------AGATTCAGAATCGCCAAGACATTTTATACCAGCTGATTACTTG 1656
|||||||||.||.||||||||||||||||||||||||||||||
Sbjct 3470 ACCCACAAAGTGAACTGGCAGCGGCCCATGGAGATTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTG 3543
Query 1657 GAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAA 1730
||.|||||.||||||||||||||.|||||.||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 3544 GAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAA 3617
Query 1731 ACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCACACAGGCGTCATTCCGACGCACCATCAGTTTATCA 1804
.|||||||||||||||||.||||||||||||||.|||||||||||.|||||.|||||.||.|||||||||||||
Sbjct 3618 GCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCA 3691
Query 1805 CTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATACTGCAAAAAGGAAATCTGGGTCAGAG--------- 1869
||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||||.||||
Sbjct 3692 CTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAGATGAGACCT 3765
Query 1870 ---------AAATATGACT-----GGGCA--------------------------------------------- 1884
||||.||||| |..||
Sbjct 3766 GCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGAGCTGCCTCTGCAGAAGGGAGACGTTGTTTACAT 3839
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3840 CTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACACCATGGCCGGGTGGGAATCTTCCCACGCACCTATA 3913
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3914 TCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAA 3987
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3988 GCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAGGGGGAGAGGATCACGCT 4061
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4062 GCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCA 4135
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4136 CCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCC 4209
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4210 CCAAGTCGCAGTGCCACTGTGAGCCCACAGTATACTAGTCACAGCAAGCTCATCATGCCAGCCCCTTCATCTCT 4283
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4284 ACCCCACCCCCGCCGAGCCCTGTCCCCTGAGATGCACGCCATCACCTCCGAGTGGATCTCTCTGACTGTCGGGG 4357
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4358 TCCCAGGCAGGCGTTCTCTGGCCATGACACCACCCTTGCCTCCTCTGCCTGAGGCTTCTGTCTATGACATGGAC 4431
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4432 CGCCTGGCCTTGTCAGCAAGGGCCCGTCCCTCCTTGCCTCTCAGCCTCCCCTATTCAAGTTGGTCAGATCACTC 4505
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4506 CACCCTGCGCCCAGTGGTCTCCCCGATGGCCCTGCCTCCACCCCACAAAGCCTACTCACTGGCACCCAGTGTCC 4579
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4580 AGGCTCCTCTTCACGTCAATGGAGATGGTGGTATTCACATTCGCCAAGATGGCTTCTCCCAGCCACCACCTGGG 4653
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4654 AACTCTGATAGGGTCATCTCAGAGCTTAGTGACGCCTTTAGCAGCCAGAGCAAGAGACAGCCCTGGCGAGAAGA 4727
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4728 TGGACCATATGACAGGAAAGCAGAGAGCGAGGCAGGTGAGAGATACCCTGGTGGACCCAAGATCTCTAAGAAGA 4801
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4802 GCTGCTTGAAACCTTCAGACGTGGTCAGGTGCCTGAGTTCTGAGCAGAGACTCTCAGAGTTCCACACTCCTGAG 4875
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4876 GACAGTCAGTCCTGCAAGCCCCTGGGTGGCCCTTTCCCAGCCTGGGAGACTGGGCCACCAGAGCTGCACAGAGC 4949
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4950 TGTCGAGGCTGACAGGAAGGCTGCTCAGAGTGGTGTGAGCCAGCCTTCTCATCATTCATTGAGCGCAGGACCTG 5023
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 5024 ATCTCACAGAATCTGAAAAGAACTATGTGGAAGCGGTTTGCAATGAGATCATAAACATTGCGGAGAAATCTGTT 5097
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 5098 CATTACTGCAGCACTGTCTCTCATCCCCTTGACTTCCATCACAAGGTACCCCCTTCTGACAATAAATCATCTTT 5171
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 5172 AATCATTTCTCAGCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGT 5245
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 5246 GTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTT 5319
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 5320 GATGTCATGGAAAAATGTGACGATGGATGGTTTGTTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCC 5393
Query 1885 ---------------------------- 1884
Sbjct 5394 AGGCAACTATGTAAAACCTTTATATCTA 5421
