Construct: ORF ccsbBroad304_11524

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002855.1_s304c1, BRDN0000403817
Derived from:
ccsbBroadEn_11524
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SORBS1 (10580)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11524
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10580 SORBS1 sorbin and SH3 domain conta... NM_015385.4 74% 67.8% (many diffs)
2 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015524.1 72.6% 72.3% (many diffs)
3 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015523.1 71.8% 71.5% (many diffs)
4 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015522.2 70% 69.7% (many diffs)
5 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015521.1 69.6% 69.3% (many diffs)
6 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015520.2 69.3% 69% (many diffs)
7 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015518.1 67.7% 67.4% (many diffs)
8 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015517.2 67.4% 67.1% (many diffs)
9 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015516.2 66.1% 65.8% (many diffs)
10 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015515.2 65.4% 65.2% (many diffs)
11 human 10580 SORBS1 sorbin and SH3 domain conta... NM_001290296.1 62.4% 62.2% (many diffs)
12 human 10580 SORBS1 sorbin and SH3 domain conta... XM_006717589.2 62.4% 62.1% (many diffs)
13 human 10580 SORBS1 sorbin and SH3 domain conta... NM_006434.2 59.8% 54% (many diffs)
14 human 10580 SORBS1 sorbin and SH3 domain conta... NM_001034957.1 58.4% 58.1% (many diffs)
15 human 10580 SORBS1 sorbin and SH3 domain conta... XM_006717593.1 58.3% 58% (many diffs)
16 human 10580 SORBS1 sorbin and SH3 domain conta... NM_001290295.2 57.7% 57.4% (many diffs)
17 human 10580 SORBS1 sorbin and SH3 domain conta... NM_001034956.1 57.2% 57% (many diffs)
18 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015540.1 56.7% 56.4% (many diffs)
19 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015539.1 56.5% 56.2% (many diffs)
20 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015537.2 56.2% 55.9% (many diffs)
21 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015536.1 56.1% 55.8% (many diffs)
22 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015535.1 55.9% 55.6% (many diffs)
23 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015510.2 55.7% 51.3% (many diffs)
24 human 10580 SORBS1 sorbin and SH3 domain conta... NM_024991.3 55.7% 55.4% (many diffs)
25 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015533.1 54.9% 54.6% (many diffs)
26 human 10580 SORBS1 sorbin and SH3 domain conta... XM_011539167.1 54.9% 54.6% (many diffs)
27 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015505.2 54.8% 54.5% (many diffs)
28 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015532.2 54.5% 54.2% (many diffs)
29 human 10580 SORBS1 sorbin and SH3 domain conta... NM_001034955.1 54.4% 54.3% (many diffs)
30 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015530.2 54.2% 53.9% (many diffs)
31 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015529.2 54% 53.7% (many diffs)
32 human 10580 SORBS1 sorbin and SH3 domain conta... NM_001290297.1 53.9% 53.7% (many diffs)
33 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015503.2 53.5% 53.2% (many diffs)
34 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015507.2 53.1% 49% (many diffs)
35 human 10580 SORBS1 sorbin and SH3 domain conta... XM_024447770.1 53% 52.7% (many diffs)
36 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015527.1 52.6% 52.4% (many diffs)
37 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015502.2 52.3% 52.1% (many diffs)
38 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015501.2 51% 50.8% (many diffs)
39 human 10580 SORBS1 sorbin and SH3 domain conta... NM_001290294.2 49.4% 49.2% (many diffs)
40 human 10580 SORBS1 sorbin and SH3 domain conta... XM_024447769.1 48.5% 48.3% (many diffs)
41 human 10580 SORBS1 sorbin and SH3 domain conta... NM_001034954.1 48.5% 48.3% (many diffs)
42 human 10580 SORBS1 sorbin and SH3 domain conta... XM_011539155.1 45.4% 45.2% (many diffs)
43 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015500.2 44.4% 41.1% (many diffs)
44 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015513.1 43.1% 42.9% (many diffs)
45 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015512.1 43% 42.8% (many diffs)
46 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015511.2 41.7% 41.5% (many diffs)
47 human 10580 SORBS1 sorbin and SH3 domain conta... XM_011539150.2 41.6% 41.4% (many diffs)
48 human 10580 SORBS1 sorbin and SH3 domain conta... XM_011539140.2 40.9% 40.7% (many diffs)
49 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015509.1 40.8% 40.5% (many diffs)
50 human 10580 SORBS1 sorbin and SH3 domain conta... XM_017015506.2 39.7% 39.5% (many diffs)
51 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247195.1 54.3% 54.1% (many diffs)
52 mouse 20411 Sorbs1 sorbin and SH3 domain conta... NM_001034964.1 50.8% 51.6% (many diffs)
53 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247198.1 48.9% 48.7% (many diffs)
54 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247190.1 47.6% 47.4% (many diffs)
55 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247197.1 46.3% 46.1% (many diffs)
56 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_006526806.3 46.2% 46% (many diffs)
57 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247189.1 45.2% 44.9% (many diffs)
58 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_017318093.1 44.4% 44.1% (many diffs)
59 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247186.1 43.5% 43.3% (many diffs)
60 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247193.1 43.4% 43.1% (many diffs)
61 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_017318092.1 43.3% 43% (many diffs)
62 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247185.1 42.8% 42.5% (many diffs)
63 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247192.1 42.5% 42.3% (many diffs)
64 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_017318091.1 37.4% 37.2% (many diffs)
65 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247183.1 36.4% 36.2% (many diffs)
66 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247178.1 30.9% 30.8% (many diffs)
67 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_006526798.3 30.3% 30.2% (many diffs)
68 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_006526804.3 30.2% 30.6% (many diffs)
69 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247177.1 30.2% 30% (many diffs)
70 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247176.1 28% 27.8% (many diffs)
71 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247175.1 27.6% 27.4% (many diffs)
72 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247174.1 27.3% 27.2% (many diffs)
73 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247172.1 26.8% 26.7% (many diffs)
74 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_006526795.3 26.7% 26.6% (many diffs)
75 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_006526793.3 26.6% 26.5% (many diffs)
76 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247173.1 26.4% 26.2% (many diffs)
77 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_006526789.3 26.2% 26.1% (many diffs)
78 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_006526790.3 26.2% 26.1% (many diffs)
79 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_006526792.3 26.2% 26.1% (many diffs)
80 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_017318090.1 25.5% 25.7% (many diffs)
81 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247180.1 24.5% 24.9% (many diffs)
82 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_017318089.1 24.1% 24.4% (many diffs)
83 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_011247181.1 24% 24.3% (many diffs)
84 mouse 20411 Sorbs1 sorbin and SH3 domain conta... XM_006526807.3 17.7% 18.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1950
ORF length:
1884
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag ttctgaatgt gatggtggtt ccaaagctgt gatgaatggc ttggcacctg
121gcagcaatgg gcaagacaaa gacatggatc ctacaaaaat ctgcactggg aagggagcgg
181tgactctccg ggcctcgtct tcctacaggg aaaccccaag cagtagccct gcgagccctc
241aggaaacccg gcaacacgaa agcaaaccag atgagtggag gctttcttcc agtgctgatg
301ccaatggaaa tgcccagccc tcttcactcg ctgccaaggg ctacagaagt gtgcatccca
361accttccttc tgacaagtcc caggatgcca cttcctccag tgcagcccag ccggaggtaa
421tagttgtccc tctctacctg gttaatactg acagagggca agaaggcact gccagacctc
481caacacctct ggggcctctt ggctgcgtcc ccacaatccc agcgactgcc tctgccgcct
541cacctctgac cttcccgact ctagatgatt tcattccccc tcatctgcag aggtggcccc
601accacagcca gccagcccgc gcctctggct cctttgcccc cattagccag acgccaccat
661ccttctcacc accacctccg ctggtccctc ctgccccgga ggacctccgc agagtctcgg
721agcctgacct cacgggagct gtttcgagta ccgattccag tcctctacta aatgaagttt
781cttcttccct tattggaact gattcccaag cctttccatc agttagcaag ccttcatccg
841cctatccctc cacaacgatt gtcaatccta ctattgtgct cttgcaacac aatcgagaac
901agcaaaaacg actcagtagc ctttcagatc ctgtctcaga aagaagagtg ggagagcagg
961actcagcacc aacccaggaa aaacccacct cacctggcaa ggctattgaa aaaagagcaa
1021aggatgacag taggcgggtg gtgaagagca ctcaggactt aagcgatgtt tccatggatg
1081aagtgggcat cccactccgg aacactgaga gatcaaaaga ctggtacaag actatgttta
1141aacagatcca caaactgaac agagatgatg attcagatct gtactctccc agatactcat
1201tttctgaaga cacaaaatct cccctttctg tgcctcgctc aaaaagtgag atgagctaca
1261ttgatggtga gaaggtagtc aagaggtcgg ccacactacc cctcccagcc cgctcttcct
1321cactgaagtc aagctcagaa agaaatgact gggaaccccc agataagaaa gtagacacaa
1381gaaaatatcg tgcagagccc aagagcattt acgaatatca gcctggcaag tcttccgttc
1441tgaccaacga aaagatgagc tcagccatca gccctactcc ggaaatttct tcagagactc
1501ctggatatat atattcttcc aacttccatg cagtgaagag ggaatcagac ggggctcctg
1561gggatctcac tagcttggag aatgagagac aaatttataa aagtgtcttg gaaggtggtg
1621acatccctct tcagggcctg agtgggctca agcgaccatc cagctctgct tccactaaag
1681attcagaatc gccaagacat tttataccag ctgattactt ggaatccacg gaagaattta
1741ttcgaagacg tcatgatgat aaagagaaac ttttagcgga ccagagacga cttaaacgcg
1801agcaagaaga ggctgatatt gcagctcgac gccacacagg cgtcattccg acgcaccatc
1861agtttatcac taatgagcgc tttggggacc tcctcaatat agacgatact gcaaaaagga
1921aatctgggtc agagaaatat gactgggcat acccaacttt cttgtacaaa gtggttggta
1981agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
2041ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)

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