Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11524
- Subject:
- XM_011247186.1
- Aligned Length:
- 3771
- Identities:
- 1642
- Gaps:
- 1896
Alignment
Query 1 ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA 71
|||||||||||||||||||.|| |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct 1 ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA 74
Query 72 CAA----------------------------------------------------------------------- 74
|||
Sbjct 75 CAAAGCCGACCCTTTCCGTGCTCGCTCTATATCTGCTGTTAAAATAATTCCCGTGAAGACAGTGAAAAGCCCTT 148
Query 75 -------------------AGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCC 129
|||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||
Sbjct 149 CAGGCCTAGTACTCCCTCCAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCC 222
Query 130 TCGTCTTCCTACAGGGAAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA--- 200
||||||||||||||||.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||
Sbjct 223 TCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTC 296
Query 201 ------------------------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCC 250
|.|||||||.||||..||||||||||||||.|||.|||||||.||.||||
Sbjct 297 AGGCCTGGAGCCAGAGGACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCC 370
Query 251 AGCCCTCTTCACTCGCTGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCC-------- 316
|||||||..||||.||||||||||||||.||||||||||||||||.||||.||.||||||||.|||
Sbjct 371 AGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGTTCTG 444
Query 317 -------------------------------------------------------------------------- 316
Sbjct 445 TCTCCCCCATGCCTTCCTTTCCCTCAAGAGGACCGCTTCGCATGGCAGTCCCCCACTATCCACCGCAACTACAA 518
Query 317 -------------------------------------------------------------------------- 316
Sbjct 519 GGACTCCCTTTACATGAGTTCACCAAAACCCTATATCCCACCCAGCACCCCCAGCCAACAGAACCCCTCACTGC 592
Query 317 -------------------------------------------------------------------------- 316
Sbjct 593 CTACACCCACCTCTGTTCCCCTGGGAGCTAGGTTGGCTCCCCGAAATGCATCATGTCCCCGTTCATTACTTTTG 666
Query 317 -------------------------------------------------------------------------- 316
Sbjct 667 GGGTCCATGGGCCTTGAAGTGCCCTCCCAACCCCAGCAATACTATGTAGCCTCCCGATTAGTATACAGTAAGAA 740
Query 317 -------------------------------------------------------------------------- 316
Sbjct 741 TGTGAGCTCTAACACACGTTGTGAGGCCACAGGGAATAAACAGGTCAGCAGCTTATATGTCCCGTGTTTATCCA 814
Query 317 -------------------------------------------------------------------------- 316
Sbjct 815 ATAACATTTGCCGGGCATCATCGGAAAACTACCCTCCTGTTGCACGTGACTCGGCCCCAGACACTCCCTCGGAG 888
Query 317 -------------------------------------------------------------------------- 316
Sbjct 889 GCCGCAGGCACTCAGGCACCAGCTCCCTGCCTTGTCCCTGGCACAGCCACAGTTGGCACAGGAAAACCACCCCC 962
Query 317 -------------------------------------------------------------------------- 316
Sbjct 963 TGCTCCTCCTCCTGACCCTCCCAAGCTATTCTTTGACAACCGCAAAGATGACGGTAACCGCGGTGAGAATCACA 1036
Query 317 -------------------------------------------------------------------------- 316
Sbjct 1037 CACTGGGGACATGGGCCTCGTTCCCAGATGCAGTGAGGCCTCCCAGGCTAGGCCCCCAGGTTACCTCTGATCCC 1110
Query 317 ----------------------------------------------------AGGATGCCACTTCCTCCAGTGC 338
|||.||||||.||||||||..|
Sbjct 1111 GAAAACCAGAAGAACAAAGAAACTTACCTTTTGCAGCCGTGTTATCCAGCCAAGGGTGCCACCTCCTCCAGCTC 1184
Query 339 AGCCCAGCCGGAGGTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGGGCAAGAAGGCACTG 406
|||||.|.|.||||||||||||||.|||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1185 AGCCCCGTCTGAGGTAATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGGGCAAGAAGGCACTG 1258
Query 407 CCAGACCTCCAACACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCT 480
|||||.|||||.||.||||||||||.|||||||||||||.|||..||||.|||||..||.||||.|||||||||
Sbjct 1259 CCAGAACTCCAGCATCTCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCCCTGCTGCCTCACCT 1332
Query 481 CTGACCTTCCCGACTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCG 554
||||||||||||||.||.||||||||||||||||||||.|||||||||.|||||||||||||||||||||||.|
Sbjct 1333 CTGACCTTCCCGACACTCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCACAGCCAGCCAGCCAG 1406
Query 555 CGCCTCTGGCTCCTTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTG 628
.||.|.|||||||.|..||||...||||||||||.|||||.| |||||||||||||||||||||||||||.|
Sbjct 1407 TGCTTGTGGCTCCCTCTCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCCGCTGGTCCCTCCCG 1477
Query 629 CCCCGGAGGACCTCCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTA 702
.||||||||||||||.|||||.|..|||||||||||||.||||||||||.||.||||||| .|||||||.||
Sbjct 1478 TCCCGGAGGACCTCCACAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG---GCAGTCCTTTA 1548
Query 703 CTAAATGAAGTTTCTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATC 773
|||||.||||||||||||||||..||||.|||.||||||||||.||| ||||.|| ||||..|||||.||
Sbjct 1549 CTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTC 1619
Query 774 CGCCTATCCCTCCACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGAC 847
.|||||.||||||||.||.||.|||||.|||||.|||||||||.||||.|||||||||||.||||||||.||||
Sbjct 1620 TGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGAC 1693
Query 848 TCAGTAGCCTTTCAGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCC 921
|||||||.|||||||||||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|.|.|||.|
Sbjct 1694 TCAGTAGTCTTTCAGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTC 1767
Query 922 ACCTCACCTGGCAAGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTT 995
||.||.||.||||.||||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.||||||.|
Sbjct 1768 ACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCT 1841
Query 996 AAGCGATGTTTCCATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTA 1069
.||||||||.||.|..||||||||||||||||||||||||||.||.|||.||||.||||||||||||||.||||
Sbjct 1842 GAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTA 1915
Query 1070 TGTTTAAACAGATCCACAAACTGAACAG---------------------------------------------- 1097
||||||||||||||||||||||||||||
Sbjct 1916 TGTTTAAACAGATCCACAAACTGAACAGAGACACTCCTGAGGAAAACCCTTATTTCCCTACGTACAAATTCCCC 1989
Query 1098 -----------------------------AGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGA 1142
||||||||||||.|||.|..|.||.||..||||.||.||.|||||
Sbjct 1990 GAGCTTCCAGAAATCCTGCAGAATTCTGAAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGA 2063
Query 1143 AGACACAAAATCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCA 1216
.||||||||.|||||||||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.||.|
Sbjct 2064 CGACACAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTA 2137
Query 1217 AGAGGTCGGCCACACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAA 1290
|||||||.||||||||.||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||||.
Sbjct 2138 AGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAG 2211
Query 1291 CCCCCAGATAAGAAAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAA 1364
|||||||||||||||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||||.|||||
Sbjct 2212 CCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAA 2285
Query 1365 GTCTTCCGTTCTGACCAACGAAAAGAT----------------------------------------------- 1391
||||||.||.||||||||.||.|||||
Sbjct 2286 GTCTTCGGTCCTGACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTT 2359
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 2360 GGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCGCCTCCCAAAAAGATATGGGACTATACTCCTGGAGAC 2433
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 2434 TGCTCTATCCTTCCTAGAGAGGATAGAAAGACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGA 2507
Query 1392 ---------------------------------------------------------GAGCTCAGCCATCAGCC 1408
|||||||||..||||||
Sbjct 2508 GGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGCTCAGCAGTCAGCC 2581
Query 1409 CTACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGAGGGAATCA 1482
|.|||||.||.|||.|.||||||.|||||||||||||.|||||||||||||||||||||||||||||.|||||.
Sbjct 2582 CGACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCG 2655
Query 1483 GACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAAGGTGGTGA 1556
||||||.|.||.||||.||||.|||||||||||||||||||.||.||.|||||.|||||||||||||||||.||
Sbjct 2656 GACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGA 2729
Query 1557 CATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAAAGATTCAGAATCGCCAA 1630
||||||||||||||||||.|||||||||||||||||.||||||||.||||||||||||||||||||.||.||||
Sbjct 2730 CATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGATTCAGAGTCACCAA 2803
Query 1631 GACATTTTATACCAGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATAAAGAGAAA 1704
||||||||||||||||||||||||||||.|||||.||||||||||||||.|||||.||.|||||||||||||||
Sbjct 2804 GACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAGAAA 2877
Query 1705 CTTTTAGCGGACCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCACACAGGCGT 1778
||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||.||
Sbjct 2878 CTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGT 2951
Query 1779 CATTCCGACGCACCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATACTGCAAAAA 1852
|||.|||||.||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||
Sbjct 2952 CATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAA 3025
Query 1853 GGAAATCTGGGTCAGAG------------------AAATATGACT-----GGGCA------------------- 1884
||||||||||||.|||| ||||.||||| |..||
Sbjct 3026 GGAAATCTGGGTTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGAGCTGCCT 3099
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3100 CTGCAGAAGGGAGACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACACCATGGCCG 3173
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3174 GGTGGGAATCTTCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCAC 3247
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3248 CCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCT 3321
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3322 TTCCGAAAGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGAC 3395
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3396 ATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATT 3469
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3470 ACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGCAACCTCAAGCCCAGCAG 3543
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3544 CGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAGTTATGTGCC 3617
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3618 ACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGT 3691
Query 1885 ----------------------------------------------------------------------- 1884
Sbjct 3692 TTGTTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCTTTATATCTA 3762
