Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11524
- Subject:
- XM_011247193.1
- Aligned Length:
- 3783
- Identities:
- 1642
- Gaps:
- 1908
Alignment
Query 1 ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA 71
|||||||||||||||||||.|| |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct 1 ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA 74
Query 72 CAA----------------------------------------------------------------------- 74
|||
Sbjct 75 CAAAGCCGACCCTTTCCGTGCTCGCTCTATATCTGCTGTTAAAATAATTCCCGTGAAGACAGTGAAAAGCCCTT 148
Query 75 -------------------AGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCC 129
|||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||
Sbjct 149 CAGGCCTAGTACTCCCTCCAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCC 222
Query 130 TCGTCTTCCTACAGGGAAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA--- 200
||||||||||||||||.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||
Sbjct 223 TCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTC 296
Query 201 ------------------------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCC 250
|.|||||||.||||..||||||||||||||.|||.|||||||.||.||||
Sbjct 297 AGGCCTGGAGCCAGAGGACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCC 370
Query 251 AGCCCTCTTCACTCGCTGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCCAGGATGCC 324
|||||||..||||.||||||||||||||.||||||||||||||||.||||.||.||||||||.||||||.||||
Sbjct 371 AGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGGTGCC 444
Query 325 ACTTCCTCCAGTGCAGCCCAGCCGGAGGTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGG 392
||.||||||||..||||||.|.|.||||||||||||||.|||||||||||||||||||||||||| |||
Sbjct 445 ACCTCCTCCAGCTCAGCCCCGTCTGAGGTAATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGG 518
Query 393 GCAAGAAGGCACTGCCAGACCTCCAACACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCT 466
|||||||||||||||||||.|||||.||.||||||||||.|||||||||||||.|||..||||.|||||..||.
Sbjct 519 GCAAGAAGGCACTGCCAGAACTCCAGCATCTCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCC 592
Query 467 CTGCCGCCTCACCTCTGACCTTCCCGACTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCAC 540
||||.|||||||||||||||||||||||.||.||||||||||||||||||||.|||||||||.|||||||||||
Sbjct 593 CTGCTGCCTCACCTCTGACCTTCCCGACACTCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCAC 666
Query 541 AGCCAGCCAGCCCGCGCCTCTGGCTCCTTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCC 614
||||||||||||.|.||.|.|||||||.|..||||...||||||||||.|||||.| |||||||||||||||
Sbjct 667 AGCCAGCCAGCCAGTGCTTGTGGCTCCCTCTCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCC 737
Query 615 GCTGGTCCCTCCTGCCCCGGAGGACCTCCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCG 688
||||||||||||.|.||||||||||||||.|||||.|..|||||||||||||.||||||||||.||.|||||||
Sbjct 738 GCTGGTCCCTCCCGTCCCGGAGGACCTCCACAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG 811
Query 689 ATTCCAGTCCTCTACTAAATGAAGTTTCTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTT 759
.|||||||.|||||||.||||||||||||||||..||||.|||.||||||||||.||| ||||.||
Sbjct 812 ---GCAGTCCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA--- 879
Query 760 AGCAAGCCTTCATCCGCCTATCCCTCCACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGA 833
||||..|||||.||.|||||.||||||||.||.||.|||||.|||||.|||||||||.||||.|||||||||||
Sbjct 880 AGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGA 953
Query 834 ACAGCAAAAACGACTCAGTAGCCTTTCAGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAA 907
.||||||||.|||||||||||.|||||||||||||.||||||.|||||||.|||.|||||||||.|||.|||||
Sbjct 954 GCAGCAAAAGCGACTCAGTAGTCTTTCAGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAA 1027
Query 908 CCCAGGAAAAACCCACCTCACCTGGCAAGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAG 981
|||..|.|.|||.|||.||.||.||||.||||..|||.|.|||.||||||||||..||.||.||||||||||.|
Sbjct 1028 CCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGG 1101
Query 982 AGCACTCAGGACTTAAGCGATGTTTCCATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGA 1055
|||||.||||||.|.||||||||.||.|..||||||||||||||||||||||||||.||.|||.||||.|||||
Sbjct 1102 AGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGA 1175
Query 1056 CTGGTACAAGACTATGTTTAAACAGATCCACAAACTGAACAGAGATGATGATTCAGATCTGTACTCTCCCAGAT 1129
|||||||||.||||||||||||||||||||||||||||||||||||||||||||.|||.|..|.||.||..|||
Sbjct 1176 CTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAGATGATGATTCTGATGTCCATTCCCCTCGAT 1249
Query 1130 ACTCATTTTCTGAAGACACAAAATCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGT 1203
|.||.||.|||||.||||||||.|||||||||||||||||||||||||||||||||||||.||||||.||.||.
Sbjct 1250 ATTCCTTCTCTGACGACACAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGG 1323
Query 1204 GAGAAGGTAGTCAAGAGGTCGGCCACACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAG 1277
|||||.||.||.||||||||.||||||||.||.||||||||||||||.||||||||.|||||.|||.|.|||||
Sbjct 1324 GAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG 1397
Query 1278 AAATGACTGGGAACCCCCAGATAAGAAAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAAT 1351
|||.||||||||.|||||||||||||||||.||.||.||||||||.||.|||||||||||.|||||||||||||
Sbjct 1398 AAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAAT 1471
Query 1352 ATCAGCCTGGCAAGTCTTCCGTTCTGACCAACGAAAAGAT---------------------------------- 1391
|||||||.|||||||||||.||.||||||||.||.|||||
Sbjct 1472 ATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTA 1545
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 1546 AAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCGCCTCCCAAAAAGATATGGGACTA 1619
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 1620 TACTCCTGGAGACTGCTCTATCCTTCCTAGAGAGGATAGAAAGACTAATCTAGAGAAAGATCTCAGCTTCTGCC 1693
Query 1392 ----------------------------------------------------------------------GAGC 1395
||||
Sbjct 1694 AAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGC 1767
Query 1396 TCAGCCATCAGCCCTACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGT 1469
|||||..|||||||.|||||.||.|||.|.||||||.|||||||||||||.|||||||||||||||||||||||
Sbjct 1768 TCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGT 1841
Query 1470 GAAGAGGGAATCAGACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCT 1543
||||||.|||||.||||||.|.||.||||.||||.|||||||||||||||||||.||.||.|||||.|||||||
Sbjct 1842 GAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCT 1915
Query 1544 TGGAAGGTGGTGACATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAAAGAT 1617
||||||||||.||||||||||||||||||||.|||||||||||||||||.||||||||.|||||||||||||||
Sbjct 1916 TGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGAT 1989
Query 1618 TCAGAATCGCCAAGACATTTTATACCAGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGA 1691
|||||.||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.|||||.||.||
Sbjct 1990 TCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGA 2063
Query 1692 TGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGAC 1765
|||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.|
Sbjct 2064 TGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCC 2137
Query 1766 GCCACACAGGCGTCATTCCGACGCACCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGAC 1839
||||||||||.|||||.|||||.||.|||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 2138 GCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGAT 2211
Query 1840 GATACTGCAAAAAGGAAATCTGGGTCAGAG------------------AAATATGACT-----GGGCA------ 1884
|||||.||.||||||||||||||||.|||| ||||.||||| |..||
Sbjct 2212 GATACGGCCAAAAGGAAATCTGGGTTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCT 2285
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2286 GAAGGAGCTGCCTCTGCAGAAGGGAGACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTG 2359
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2360 AACACCATGGCCGGGTGGGAATCTTCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCC 2433
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2434 AGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACA 2507
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2508 AGTAGAAATGTCTTTCCGAAAGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGA 2581
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2582 GGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAA 2655
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2656 ACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGTATAC 2729
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2730 TAGTCACAGCAAGCTCATCATGCCAGCCCCTTCATCTCTACCCCACCCCCGCCGAGCCCTGTCCCCTGAGATGC 2803
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2804 ACGCCATCACCTCCGAGTGGATCTCTCTGACTGTCGGGGTCCCAGGCAGGCGTTCTCTGGCCATGACACCACCC 2877
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2878 TTGCCTCCTCTGCCTGAGGCTTCTGTCTATGACATGGACCGCCTGGCCTTGTCAGCAAGGGCCCGTCCCTCCTT 2951
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2952 GCCTCTCAGCCTCCCCTATTCAAGTTGGTCAGATCACTCCACCCTGCGCCCAGTGGTCTCCCCGATGGCCCTGC 3025
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3026 CTCCACCCCACAAAGCCTACTCACTGGCACCCAGTGTCCAGGCTCCTCTTCACGTCAATGGAGATGGTGGTATT 3099
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3100 CACATTCGCCAAGATGGCTTCTCCCAGCCACCACCTGGGAACTCTGATAGGGTCATCTCAGAGCTTAGTGACGC 3173
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3174 CTTTAGCAGCCAGAGCAAGAGACAGCCCTGGCGAGAAGATGGACCATATGACAGGAAAGCAGAGAGCGAGGCAG 3247
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3248 GTGAGAGATACCCTGGTGGACCCAAGATCTCTAAGAAGAGCTGCTTGAAACCTTCAGACGTGGTCAGGTGCCTG 3321
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3322 AGTTCTGAGCAGAGACTCTCAGAGTTCCACACTCCTGAGGACAGTCAGTCCTGCAAGCCCCTGGGTGGCCCTTT 3395
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3396 CCCAGCCTGGGAGACTGGGCCACCAGAGCTGCACAGAGCTGTCGAGGCTGACAGGAAGGCTGCTCAGAGTGGTG 3469
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3470 TGAGCCAGCCTTCTCATCATTCATTGAGCGCAGGACCTGATCTCACAGAATCTGAAAAGAACTATGTGCAACCT 3543
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3544 CAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATA 3617
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3618 TAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTG 3691
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3692 ACGATGGATGGTTTGTTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCT 3765
Query 1885 --------- 1884
Sbjct 3766 TTATATCTA 3774
