Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11547
- Subject:
- NR_163254.1
- Aligned Length:
- 3895
- Identities:
- 1521
- Gaps:
- 2367
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAGCAGAGGACTCTGACTGACAGGTGTTCCCCGACTCCCAGTGGCGAAAGGTCCTCAGGGAAAACAGCTAAAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAGTAAACAGGTCATGGCACGTTTAACAAAAAGACGACAGGCGGATACAAAAGCTATCCAGCATCTTTGGGCAG 148
Query 1 -----------------------------------------------------------ATGTCTCGAGTCCAC 15
|||||||||||||||
Sbjct 149 CCATTGAGATTATACGGAACCAGAAGCAGATTGCCAACATTGACCGTATTACAAAGTATATGTCTCGAGTCCAC 222
Query 16 GGTATGCACCCTAAAGAGACCACCCGTCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTCGAAACTCTAAC 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGTATGCACCCTAAAGAGACCACCCGTCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTCGAAACTCTAAC 296
Query 90 AGTGGGCTGCAAAGGTTCAAAAGCTGGTATTGAACAAGAAGGATATTGGTTGCCAGGAGATGAGATTGACTGGG 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGTGGGCTGCAAAGGTTCAAAAGCTGGTATTGAACAAGAAGGATATTGGTTGCCAGGAGATGAGATTGACTGGG 370
Query 164 AAACAGAAAATCATGACTGGTATTGTTTTGAATGCCATTTGCCTGGAGAGGTGTTGATATGTGACCTGTGTTTT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAACAGAAAATCATGACTGGTATTGTTTTGAATGCCATTTGCCTGGAGAGGTGTTGATATGTGACCTGTGTTTT 444
Query 238 CGTGTGTATCATTCCAAGTGTTTGTCTGATGAGTTCAGGCTTAGAGACAGCAGTAGTCCCTGGCAGTGCCCAGT 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CGTGTGTATCATTCCAAGTGTTTGTCTGATGAGTTCAGGCTTAGAGACAGCAGTAGTCCCTGGCAGTGCCCAGT 518
Query 312 TTGCAGGAGCATTAAGAAGAAGAATACAAACAAACAGGAGATGGGCACATACCTCAGATTCATTGTCTCCCGCA 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTGCAGGAGCATTAAGAAGAAGAATACAAACAAACAGGAGATGGGCACATACCTCAGATTCATTGTCTCCCGCA 592
Query 386 TGAAGGAGAGGGCTATAGATCTTAATAAAAAGGGGAAGGACAATAAACACCCGATGTACAGGAGGCTGGTGCAC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGAAGGAGAGGGCTATAGATCTTAATAAAAAGGGGAAGGACAATAAACACCCGATGTACAGGAGGCTGGTGCAC 666
Query 460 TCAGCTGTGGACGTTCCCACCATTCAAGAGAAAGTGAATGAAGGGAAATACCGAAGTTATGAAGAGTTCAAAGC 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCAGCTGTGGACGTTCCCACCATTCAAGAGAAAGTGAATGAAGGGAAATACCGAAGTTATGAAGAGTTCAAAGC 740
Query 534 TGATGCCCAATTGCTTCTCCACAATACCGTGATTTTCTATGGAGACAGTGAGCAAGCTGACATTGCGAGGATGC 607
|||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGATGCCCAATTGCTTCTCCACAATACCGTGATTTTCTATG--------------------------------- 781
Query 608 TATATAAAGACACATGTCATGAGCTGGATGAACTGCAGCTTTGCAAGAATTGCTTTTACTTGTCAAATGCTCGT 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 --------------------GAGCTGGATGAACTGCAGCTTTGCAAGAATTGCTTTTACTTGTCAAATGCTCGT 835
Query 682 CCTGACAACTGGTTCTGTTATCCTTGTATACCTAATCATGAGCTGGTTTGGGCTAAAATGAAAGGTTTTGGGTT 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CCTGACAACTGGTTCTGTTATCCTTGTATACCTAATCATGAGCTGGTTTGGGCTAAAATGAAAGGTTTTGGGTT 909
Query 756 TTGGCCAGCCAAAGTCATGCAGAAAGAAGACAATCAAGTCGACGTTCGCTTCTTTGGCCACCACCACCAGAGGG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TTGGCCAGCCAAAGTCATGCAGAAAGAAGACAATCAAGTCGACGTTCGCTTCTTTGGCCACCACCACCAGAGGG 983
Query 830 CCTGGATTCCTTCTGAAAACATTCAAGATATCACAGTCAACATTCATCGGCTGCACGTGAAGCGCAGTATGGGT 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 CCTGGATTCCTTCTGAAAACATTCAAGATATCACAGTCAACATTCATCGGCTGCACGTGAAGCGCAGTATGGGT 1057
Query 904 TGGAAAAAGGCCTGTGATGAGCTGGAGCTGCATCAGCGTTTCCTACGAGAAGGGAGATTTTGGAAATCTAAGAA 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TGGAAAAAGGCCTGTGATGAGCTGGAGCTGCATCAGCGTTTCCTACGAGAAGGGAGATTTTGGAAATCTAAGAA 1131
Query 978 TGAGGACCGAGGTGAGGAAGAGGCAGAATCCAGTATCTCCTCCACCAGTAATGAGCAGCTAAAGGTCACTCAAG 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TGAGGACCGAGGTGAGGAAGAGGCAGAATCCAGTATCTCCTCCACCAGTAATGAGCAGCTAAAGGTCACTCAAG 1205
Query 1052 AACCAAGAGCAAAGAAAGGACGACGTAATCAAAGTGTGGAGCCCAAAAAGGAAGAACCAGAGCCTGAAACAGAA 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 AACCAAGAGCAAAGAAAGGACGACGTAATCAAAGTGTGGAGCCCAAAAAGGAAGAACCAGAGCCTGAAACAGAA 1279
Query 1126 GCAGTAAGTTCTAGCCAGGAAATACCCACGATGCCTCAGCCCATCGAAAAAGTCTCCGTGTCAACTCAGACAAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 GCAGTAAGTTCTAGCCAGGAAATACCCACGATGCCTCAGCCCATCGAAAAAGTCTCCGTGTCAACTCAGACAAA 1353
Query 1200 GAAGTTAAGTGCCTCTTCACCAAGAATGCTGCATCGGAGCACCCAGACCACAAACGACGGCGTGTGTCAGAGCA 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 GAAGTTAAGTGCCTCTTCACCAAGAATGCTGCATCGGAGCACCCAGACCACAAACGACGGCGTGTGTCAGAGCA 1427
Query 1274 TGTGCCATGACAAATACACCAAGATCTTCAATGACTTCAAAGACCGGATGAAGTCGGACCACAAGCGGGAGACA 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 TGTGCCATGACAAATACACCAAGATCTTCAATGACTTCAAAGACCGGATGAAGTCGGACCACAAGCGGGAGACA 1501
Query 1348 GAGCGTGTTGTCCGAGAAGCTCTGGAGAAGCTGCGTTCTGAAATGGAAGAAGAAAAGAGACAAGCTGTAAATAA 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 GAGCGTGTTGTCCGAGAAGCTCTGGAGAAGCTGCGTTCTGAAATGGAAGAAGAAAAGAGACAAGCTGTAAATAA 1575
Query 1422 AGCTGTAGCCAACATGCAGGGTGAGATGGACAGAAAATGTAAGCAAGTAAAGGAAAAGTGTAAGGAAGAATTTG 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 AGCTGTAGCCAACATGCAGGGTGAGATGGACAGAAAATGTAAGCAAGTAAAGGAAAAGTGTAAGGAAGAATTTG 1649
Query 1496 TAGAAGAAATCAAGAAGCTGGCAACACAGCACAAGCAACTGATTTCTCAGACCAAGAAGAAGCAGTGG------ 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 TAGAAGAAATCAAGAAGCTGGCAACACAGCACAAGCAACTGATTTCTCAGACCAAGAAGAAGCAGTGGTGCTAC 1723
Query 1564 ----GT------------AAATACCAGTCTTTTT---------------------------------------- 1581
|| |..|||||.|..|..|
Sbjct 1724 AACTGTGAGGAGGAGGCCATGTACCACTGCTGCTGGAACACATCCTACTGCTCCATCAAGTGCCAGCAGGAGCA 1797
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 1798 CTGGCACGCGGAGCACAAGCGCACCTGCCGCCGGAAAAGATGAAGCTGGCCCTTCCCGGAGTCACCCCGATGAT 1871
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 1872 TACTCTTTTCAGACACAGCGGTTTTTGTTTCCAAGAAGCCAAAATTGTTTAGAATTTGCTTCCCATTTTGCACC 1945
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 1946 AGCCTTTAAACACTTTTCGTGAAGAAATTTTGCACAGTAGTTTAAATCTTTTGTTAATGCTCCTCCGAAGTTTT 2019
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2020 TCAGGGGGTAAAAGTAACATCAGTGGAGGGTATTATTTTAAATAAATTTTAATTGAGAATTTGTTGCATTTTCA 2093
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2094 GCAAATTTTAAAACATTTTTAGGTTTTACAGAGATTTTAACCTTTAAACAACAGATCTTTAAAAAACAGGTGAA 2167
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2168 TACAAGTGAGTTTAACAAAGAAACATTTAGAATAGATCTGAATGTAAGAACTACAGAACTGTTTCAGAAATAAA 2241
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2242 ACATACTACCTTGATGTGACATTTTTTTCTTAACCTTGTTGAGCTGGTTTTGTTCAGCTTAATTTACTGTTCAA 2315
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2316 AGGCATTATCTGTTGGTCACACCAGTGGGTATATGATTGAATTTAGGGAACAGGGTTGACACAGCAGGGCTAGT 2389
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2390 CCTGCATATTTTTTCTTAAATATTTCCCAATTGTGTTTTTCATTATTTCTTTTCAATATATAACTTTTATAACA 2463
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2464 AATTATTAGCTTTGATCTTGTAGTTTAAAATTGCAGGGAACTGGGGTAATCTTTTACTGAGCTGGATCTTAGAG 2537
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2538 AAAATGAATATTTAAATTTTAAAGTTTGCACATTTCATCTTTGTCCTAACATGAGTGCTTGTAACAAAATAAAC 2611
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2612 AACAAAAACAAAGCCAAAAACTACCTTTATCCATATGTGAAATTATAGATGAGGCATACGAATTTGTTTAATGC 2685
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2686 TTCCCTTCCCTTCCCACATATCATCTCACTGCCTATTATCTGGTGTCACCTCATGTATCGTAAGTTAATACTAA 2759
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2760 AAGAAGAGAAAGCACTTAAGTTTCACAGAAGCCGTTATGTTTGTAGTAATGGGTCATTGCCTACTAATGAACTC 2833
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2834 CATCACTGTACACAGAATGAAGAATAATGCATGTTAATTTTCTTGTATTAAAGATGCCGTGATTTGTAAAAAGT 2907
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2908 CTGTATTTTGCGGAATGTCTGGATTAAGAAGCATTACCAATAGGAATGGATCGATAGTTGAATAATGATTTTTT 2981
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2982 ATACATAGATATATAAAATACAGCCAGGAAAACTTAAATTACTTTTCTTTTAAAATATCTCACAATTTATGTGG 3055
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3056 TATTTTTAAAGACTGATCTTAGACCAAGTCAAATTCCCATTTATCATTTAGTTATTTTTTGAGGTTAGAGAATA 3129
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3130 ATTTGTACATATTTATTTAGACCTTTGATATTTATTAAAGCAATTACTCACAATGGAAGTGAAAGAATCAGGAG 3203
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3204 AAAAGCCTTTTAAAAAGTATTCTCCAGGTTTGTCAGGGTCACTCTAAAGATAAAAATGTAACTAAGTCTTCTGT 3277
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3278 GAAATATCATCCATCTAATCTTGATGCTGTTGCAGATGGTGGTGACACAAGTTAATTGACAAACTACTGCCAAA 3351
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3352 TGGTGCACAATATTTTGTAAAAAGTACCCAGTAGCCCCATTTCATACAATGTACCTAAATTATGCAGTAACTTG 3425
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3426 GCATCATCGTTCCCTCCTTGTTGCTGTGTAATTAGTCAGTGTTGCCACAGTGTGTGGCGCTGATGGAGATGTCA 3499
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3500 GAACCGAGAACACTTAACCTTCTTTGATTGTTTTTCAAGTTTTAAGACTTCGATCCACCCCTATGAGAGCAAGT 3573
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3574 AATTGTGGAAATATTTTTGGTGTAAAATCATTCCAGAGTATGTAATATTTAACTGATAGCTGCATGAAAGTGAG 3647
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3648 ATTCGTGTTACTTTGGCTTTTCTGTCTCTGTTGACACGGTTGCACATTTCCAAGTTACTACAGCGTGAAAACTG 3721
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3722 TGTGTTTAAAAAAAAACAAAATTAAAAAAAGAGATTGTGGCCTGGTTTTGTAAAAGTTTTAGGTAAAATTACAA 3795
Query 1582 ----------------------------------------------- 1581
Sbjct 3796 TTGATTGTTTTAGGAATCATTATTAAAAATTTTCTGCAAATCATAAA 3842
