Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11547
Subject:
NR_163254.1
Aligned Length:
3895
Identities:
1521
Gaps:
2367

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGAGCAGAGGACTCTGACTGACAGGTGTTCCCCGACTCCCAGTGGCGAAAGGTCCTCAGGGAAAACAGCTAAAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAGTAAACAGGTCATGGCACGTTTAACAAAAAGACGACAGGCGGATACAAAAGCTATCCAGCATCTTTGGGCAG  148

Query    1  -----------------------------------------------------------ATGTCTCGAGTCCAC  15
                                                                       |||||||||||||||
Sbjct  149  CCATTGAGATTATACGGAACCAGAAGCAGATTGCCAACATTGACCGTATTACAAAGTATATGTCTCGAGTCCAC  222

Query   16  GGTATGCACCCTAAAGAGACCACCCGTCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTCGAAACTCTAAC  89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGTATGCACCCTAAAGAGACCACCCGTCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTCGAAACTCTAAC  296

Query   90  AGTGGGCTGCAAAGGTTCAAAAGCTGGTATTGAACAAGAAGGATATTGGTTGCCAGGAGATGAGATTGACTGGG  163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGTGGGCTGCAAAGGTTCAAAAGCTGGTATTGAACAAGAAGGATATTGGTTGCCAGGAGATGAGATTGACTGGG  370

Query  164  AAACAGAAAATCATGACTGGTATTGTTTTGAATGCCATTTGCCTGGAGAGGTGTTGATATGTGACCTGTGTTTT  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AAACAGAAAATCATGACTGGTATTGTTTTGAATGCCATTTGCCTGGAGAGGTGTTGATATGTGACCTGTGTTTT  444

Query  238  CGTGTGTATCATTCCAAGTGTTTGTCTGATGAGTTCAGGCTTAGAGACAGCAGTAGTCCCTGGCAGTGCCCAGT  311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CGTGTGTATCATTCCAAGTGTTTGTCTGATGAGTTCAGGCTTAGAGACAGCAGTAGTCCCTGGCAGTGCCCAGT  518

Query  312  TTGCAGGAGCATTAAGAAGAAGAATACAAACAAACAGGAGATGGGCACATACCTCAGATTCATTGTCTCCCGCA  385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTGCAGGAGCATTAAGAAGAAGAATACAAACAAACAGGAGATGGGCACATACCTCAGATTCATTGTCTCCCGCA  592

Query  386  TGAAGGAGAGGGCTATAGATCTTAATAAAAAGGGGAAGGACAATAAACACCCGATGTACAGGAGGCTGGTGCAC  459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGAAGGAGAGGGCTATAGATCTTAATAAAAAGGGGAAGGACAATAAACACCCGATGTACAGGAGGCTGGTGCAC  666

Query  460  TCAGCTGTGGACGTTCCCACCATTCAAGAGAAAGTGAATGAAGGGAAATACCGAAGTTATGAAGAGTTCAAAGC  533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCAGCTGTGGACGTTCCCACCATTCAAGAGAAAGTGAATGAAGGGAAATACCGAAGTTATGAAGAGTTCAAAGC  740

Query  534  TGATGCCCAATTGCTTCTCCACAATACCGTGATTTTCTATGGAGACAGTGAGCAAGCTGACATTGCGAGGATGC  607
            |||||||||||||||||||||||||||||||||||||||||                                 
Sbjct  741  TGATGCCCAATTGCTTCTCCACAATACCGTGATTTTCTATG---------------------------------  781

Query  608  TATATAAAGACACATGTCATGAGCTGGATGAACTGCAGCTTTGCAAGAATTGCTTTTACTTGTCAAATGCTCGT  681
                                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  782  --------------------GAGCTGGATGAACTGCAGCTTTGCAAGAATTGCTTTTACTTGTCAAATGCTCGT  835

Query  682  CCTGACAACTGGTTCTGTTATCCTTGTATACCTAATCATGAGCTGGTTTGGGCTAAAATGAAAGGTTTTGGGTT  755
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  836  CCTGACAACTGGTTCTGTTATCCTTGTATACCTAATCATGAGCTGGTTTGGGCTAAAATGAAAGGTTTTGGGTT  909

Query  756  TTGGCCAGCCAAAGTCATGCAGAAAGAAGACAATCAAGTCGACGTTCGCTTCTTTGGCCACCACCACCAGAGGG  829
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  910  TTGGCCAGCCAAAGTCATGCAGAAAGAAGACAATCAAGTCGACGTTCGCTTCTTTGGCCACCACCACCAGAGGG  983

Query  830  CCTGGATTCCTTCTGAAAACATTCAAGATATCACAGTCAACATTCATCGGCTGCACGTGAAGCGCAGTATGGGT  903
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  984  CCTGGATTCCTTCTGAAAACATTCAAGATATCACAGTCAACATTCATCGGCTGCACGTGAAGCGCAGTATGGGT  1057

Query  904  TGGAAAAAGGCCTGTGATGAGCTGGAGCTGCATCAGCGTTTCCTACGAGAAGGGAGATTTTGGAAATCTAAGAA  977
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058  TGGAAAAAGGCCTGTGATGAGCTGGAGCTGCATCAGCGTTTCCTACGAGAAGGGAGATTTTGGAAATCTAAGAA  1131

Query  978  TGAGGACCGAGGTGAGGAAGAGGCAGAATCCAGTATCTCCTCCACCAGTAATGAGCAGCTAAAGGTCACTCAAG  1051
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132  TGAGGACCGAGGTGAGGAAGAGGCAGAATCCAGTATCTCCTCCACCAGTAATGAGCAGCTAAAGGTCACTCAAG  1205

Query 1052  AACCAAGAGCAAAGAAAGGACGACGTAATCAAAGTGTGGAGCCCAAAAAGGAAGAACCAGAGCCTGAAACAGAA  1125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206  AACCAAGAGCAAAGAAAGGACGACGTAATCAAAGTGTGGAGCCCAAAAAGGAAGAACCAGAGCCTGAAACAGAA  1279

Query 1126  GCAGTAAGTTCTAGCCAGGAAATACCCACGATGCCTCAGCCCATCGAAAAAGTCTCCGTGTCAACTCAGACAAA  1199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280  GCAGTAAGTTCTAGCCAGGAAATACCCACGATGCCTCAGCCCATCGAAAAAGTCTCCGTGTCAACTCAGACAAA  1353

Query 1200  GAAGTTAAGTGCCTCTTCACCAAGAATGCTGCATCGGAGCACCCAGACCACAAACGACGGCGTGTGTCAGAGCA  1273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354  GAAGTTAAGTGCCTCTTCACCAAGAATGCTGCATCGGAGCACCCAGACCACAAACGACGGCGTGTGTCAGAGCA  1427

Query 1274  TGTGCCATGACAAATACACCAAGATCTTCAATGACTTCAAAGACCGGATGAAGTCGGACCACAAGCGGGAGACA  1347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428  TGTGCCATGACAAATACACCAAGATCTTCAATGACTTCAAAGACCGGATGAAGTCGGACCACAAGCGGGAGACA  1501

Query 1348  GAGCGTGTTGTCCGAGAAGCTCTGGAGAAGCTGCGTTCTGAAATGGAAGAAGAAAAGAGACAAGCTGTAAATAA  1421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502  GAGCGTGTTGTCCGAGAAGCTCTGGAGAAGCTGCGTTCTGAAATGGAAGAAGAAAAGAGACAAGCTGTAAATAA  1575

Query 1422  AGCTGTAGCCAACATGCAGGGTGAGATGGACAGAAAATGTAAGCAAGTAAAGGAAAAGTGTAAGGAAGAATTTG  1495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576  AGCTGTAGCCAACATGCAGGGTGAGATGGACAGAAAATGTAAGCAAGTAAAGGAAAAGTGTAAGGAAGAATTTG  1649

Query 1496  TAGAAGAAATCAAGAAGCTGGCAACACAGCACAAGCAACTGATTTCTCAGACCAAGAAGAAGCAGTGG------  1563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct 1650  TAGAAGAAATCAAGAAGCTGGCAACACAGCACAAGCAACTGATTTCTCAGACCAAGAAGAAGCAGTGGTGCTAC  1723

Query 1564  ----GT------------AAATACCAGTCTTTTT----------------------------------------  1581
                ||            |..|||||.|..|..|                                        
Sbjct 1724  AACTGTGAGGAGGAGGCCATGTACCACTGCTGCTGGAACACATCCTACTGCTCCATCAAGTGCCAGCAGGAGCA  1797

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 1798  CTGGCACGCGGAGCACAAGCGCACCTGCCGCCGGAAAAGATGAAGCTGGCCCTTCCCGGAGTCACCCCGATGAT  1871

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 1872  TACTCTTTTCAGACACAGCGGTTTTTGTTTCCAAGAAGCCAAAATTGTTTAGAATTTGCTTCCCATTTTGCACC  1945

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 1946  AGCCTTTAAACACTTTTCGTGAAGAAATTTTGCACAGTAGTTTAAATCTTTTGTTAATGCTCCTCCGAAGTTTT  2019

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2020  TCAGGGGGTAAAAGTAACATCAGTGGAGGGTATTATTTTAAATAAATTTTAATTGAGAATTTGTTGCATTTTCA  2093

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2094  GCAAATTTTAAAACATTTTTAGGTTTTACAGAGATTTTAACCTTTAAACAACAGATCTTTAAAAAACAGGTGAA  2167

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2168  TACAAGTGAGTTTAACAAAGAAACATTTAGAATAGATCTGAATGTAAGAACTACAGAACTGTTTCAGAAATAAA  2241

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2242  ACATACTACCTTGATGTGACATTTTTTTCTTAACCTTGTTGAGCTGGTTTTGTTCAGCTTAATTTACTGTTCAA  2315

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2316  AGGCATTATCTGTTGGTCACACCAGTGGGTATATGATTGAATTTAGGGAACAGGGTTGACACAGCAGGGCTAGT  2389

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2390  CCTGCATATTTTTTCTTAAATATTTCCCAATTGTGTTTTTCATTATTTCTTTTCAATATATAACTTTTATAACA  2463

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2464  AATTATTAGCTTTGATCTTGTAGTTTAAAATTGCAGGGAACTGGGGTAATCTTTTACTGAGCTGGATCTTAGAG  2537

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2538  AAAATGAATATTTAAATTTTAAAGTTTGCACATTTCATCTTTGTCCTAACATGAGTGCTTGTAACAAAATAAAC  2611

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2612  AACAAAAACAAAGCCAAAAACTACCTTTATCCATATGTGAAATTATAGATGAGGCATACGAATTTGTTTAATGC  2685

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2686  TTCCCTTCCCTTCCCACATATCATCTCACTGCCTATTATCTGGTGTCACCTCATGTATCGTAAGTTAATACTAA  2759

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2760  AAGAAGAGAAAGCACTTAAGTTTCACAGAAGCCGTTATGTTTGTAGTAATGGGTCATTGCCTACTAATGAACTC  2833

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2834  CATCACTGTACACAGAATGAAGAATAATGCATGTTAATTTTCTTGTATTAAAGATGCCGTGATTTGTAAAAAGT  2907

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2908  CTGTATTTTGCGGAATGTCTGGATTAAGAAGCATTACCAATAGGAATGGATCGATAGTTGAATAATGATTTTTT  2981

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2982  ATACATAGATATATAAAATACAGCCAGGAAAACTTAAATTACTTTTCTTTTAAAATATCTCACAATTTATGTGG  3055

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3056  TATTTTTAAAGACTGATCTTAGACCAAGTCAAATTCCCATTTATCATTTAGTTATTTTTTGAGGTTAGAGAATA  3129

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3130  ATTTGTACATATTTATTTAGACCTTTGATATTTATTAAAGCAATTACTCACAATGGAAGTGAAAGAATCAGGAG  3203

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3204  AAAAGCCTTTTAAAAAGTATTCTCCAGGTTTGTCAGGGTCACTCTAAAGATAAAAATGTAACTAAGTCTTCTGT  3277

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3278  GAAATATCATCCATCTAATCTTGATGCTGTTGCAGATGGTGGTGACACAAGTTAATTGACAAACTACTGCCAAA  3351

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3352  TGGTGCACAATATTTTGTAAAAAGTACCCAGTAGCCCCATTTCATACAATGTACCTAAATTATGCAGTAACTTG  3425

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3426  GCATCATCGTTCCCTCCTTGTTGCTGTGTAATTAGTCAGTGTTGCCACAGTGTGTGGCGCTGATGGAGATGTCA  3499

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3500  GAACCGAGAACACTTAACCTTCTTTGATTGTTTTTCAAGTTTTAAGACTTCGATCCACCCCTATGAGAGCAAGT  3573

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3574  AATTGTGGAAATATTTTTGGTGTAAAATCATTCCAGAGTATGTAATATTTAACTGATAGCTGCATGAAAGTGAG  3647

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3648  ATTCGTGTTACTTTGGCTTTTCTGTCTCTGTTGACACGGTTGCACATTTCCAAGTTACTACAGCGTGAAAACTG  3721

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3722  TGTGTTTAAAAAAAAACAAAATTAAAAAAAGAGATTGTGGCCTGGTTTTGTAAAAGTTTTAGGTAAAATTACAA  3795

Query 1582  -----------------------------------------------  1581
                                                           
Sbjct 3796  TTGATTGTTTTAGGAATCATTATTAAAAATTTTCTGCAAATCATAAA  3842

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