Construct: ORF ccsbBroad304_11547

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010859.1_s304c1, BRDN0000410290
Derived from:
ccsbBroadEn_11547
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZMYND11 (10771)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11547
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370118.1 93.3% 93.2% (many diffs)
2 human 10771 ZMYND11 zinc finger MYND-type conta... NM_212479.3 92.9% 92.9% 1_120del
3 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001202468.1 92.7% 92.7% 1_120del;696_698delAGC
4 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370116.1 90.4% 90.3% (many diffs)
5 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001330057.1 89.6% 89.5% (many diffs)
6 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370112.1 89.6% 89.5% (many diffs)
7 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370115.1 87.2% 87.1% (many diffs)
8 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370097.1 87.1% 87% (many diffs)
9 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370098.1 87.1% 87% (many diffs)
10 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370099.1 87.1% 87% (many diffs)
11 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370100.2 87.1% 87% (many diffs)
12 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370101.1 87.1% 87% (many diffs)
13 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370102.1 87.1% 87% (many diffs)
14 human 10771 ZMYND11 zinc finger MYND-type conta... NM_006624.5 87.1% 87% (many diffs)
15 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370121.1 83.7% 83.6% (many diffs)
16 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370117.1 83.3% 83.2% (many diffs)
17 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001202467.1 83.2% 83.2% 1_120del;276_277ins162;534_536delAGC
18 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370113.1 82% 81.8% (many diffs)
19 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370114.1 82% 81.8% (many diffs)
20 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370120.1 81.1% 81% (many diffs)
21 human 10771 ZMYND11 zinc finger MYND-type conta... XM_017015594.1 80.4% 80.3% (many diffs)
22 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370119.1 79% 78.9% (many diffs)
23 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001202466.1 78.3% 78.2% (many diffs)
24 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370111.1 78.3% 78.2% (many diffs)
25 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001202464.1 78.1% 78% (many diffs)
26 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370103.1 78.1% 78% (many diffs)
27 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370104.1 78.1% 78% (many diffs)
28 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370105.1 78.1% 78% (many diffs)
29 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370106.1 78.1% 78% (many diffs)
30 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370107.1 78.1% 78% (many diffs)
31 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370108.1 78.1% 78% (many diffs)
32 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370109.1 78.1% 78% (many diffs)
33 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001202465.1 73% 72.9% (many diffs)
34 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370110.1 73% 72.9% (many diffs)
35 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370123.1 72.5% 72.4% (many diffs)
36 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370124.1 72.5% 72.4% (many diffs)
37 human 10771 ZMYND11 zinc finger MYND-type conta... NM_001370122.1 70.4% 70.3% (many diffs)
38 human 10771 ZMYND11 zinc finger MYND-type conta... NR_163254.1 39% (many diffs)
39 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_001347481.1 83.8% 90.7% (many diffs)
40 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_001347477.1 78.4% 84.8% (many diffs)
41 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_001199141.2 78.2% 84.7% (many diffs)
42 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_001347474.1 78.2% 84.7% (many diffs)
43 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_001347476.1 78.2% 84.7% (many diffs)
44 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516506.3 78.2% 84.7% (many diffs)
45 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516502.3 76.3% 82.6% (many diffs)
46 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516501.3 74.4% 80.5% (many diffs)
47 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_001347470.1 71.6% 77.5% (many diffs)
48 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_001347471.1 71.6% 77.5% (many diffs)
49 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516496.3 71.6% 77.5% (many diffs)
50 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516497.2 71.6% 77.5% (many diffs)
51 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516498.2 71.6% 77.5% (many diffs)
52 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516500.2 71.6% 77.5% (many diffs)
53 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516491.3 70% 75.7% (many diffs)
54 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516492.2 70% 75.7% (many diffs)
55 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516493.2 70% 75.7% (many diffs)
56 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516494.3 70% 75.7% (many diffs)
57 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_001347472.1 69.4% 76% (many diffs)
58 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_001347473.1 69.4% 76% (many diffs)
59 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_144516.4 69.4% 76% (many diffs)
60 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_001347479.1 63.5% 69.6% (many diffs)
61 mouse 66505 Zmynd11 zinc finger, MYND domain co... NM_001347480.1 63.5% 69.6% (many diffs)
62 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_006516504.2 63.5% 69.6% (many diffs)
63 mouse 66505 Zmynd11 zinc finger, MYND domain co... XM_017315567.1 63.5% 69.6% (many diffs)
64 mouse 66505 Zmynd11 zinc finger, MYND domain co... XR_001780796.1 30.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1647
ORF length:
1581
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc tcgagtccac ggtatgcacc ctaaagagac cacccgtcag ctgagcttag
121ctgtgaaaga tggtcttatt gtcgaaactc taacagtggg ctgcaaaggt tcaaaagctg
181gtattgaaca agaaggatat tggttgccag gagatgagat tgactgggaa acagaaaatc
241atgactggta ttgttttgaa tgccatttgc ctggagaggt gttgatatgt gacctgtgtt
301ttcgtgtgta tcattccaag tgtttgtctg atgagttcag gcttagagac agcagtagtc
361cctggcagtg cccagtttgc aggagcatta agaagaagaa tacaaacaaa caggagatgg
421gcacatacct cagattcatt gtctcccgca tgaaggagag ggctatagat cttaataaaa
481aggggaagga caataaacac ccgatgtaca ggaggctggt gcactcagct gtggacgttc
541ccaccattca agagaaagtg aatgaaggga aataccgaag ttatgaagag ttcaaagctg
601atgcccaatt gcttctccac aataccgtga ttttctatgg agacagtgag caagctgaca
661ttgcgaggat gctatataaa gacacatgtc atgagctgga tgaactgcag ctttgcaaga
721attgctttta cttgtcaaat gctcgtcctg acaactggtt ctgttatcct tgtataccta
781atcatgagct ggtttgggct aaaatgaaag gttttgggtt ttggccagcc aaagtcatgc
841agaaagaaga caatcaagtc gacgttcgct tctttggcca ccaccaccag agggcctgga
901ttccttctga aaacattcaa gatatcacag tcaacattca tcggctgcac gtgaagcgca
961gtatgggttg gaaaaaggcc tgtgatgagc tggagctgca tcagcgtttc ctacgagaag
1021ggagattttg gaaatctaag aatgaggacc gaggtgagga agaggcagaa tccagtatct
1081cctccaccag taatgagcag ctaaaggtca ctcaagaacc aagagcaaag aaaggacgac
1141gtaatcaaag tgtggagccc aaaaaggaag aaccagagcc tgaaacagaa gcagtaagtt
1201ctagccagga aatacccacg atgcctcagc ccatcgaaaa agtctccgtg tcaactcaga
1261caaagaagtt aagtgcctct tcaccaagaa tgctgcatcg gagcacccag accacaaacg
1321acggcgtgtg tcagagcatg tgccatgaca aatacaccaa gatcttcaat gacttcaaag
1381accggatgaa gtcggaccac aagcgggaga cagagcgtgt tgtccgagaa gctctggaga
1441agctgcgttc tgaaatggaa gaagaaaaga gacaagctgt aaataaagct gtagccaaca
1501tgcagggtga gatggacaga aaatgtaagc aagtaaagga aaagtgtaag gaagaatttg
1561tagaagaaat caagaagctg gcaacacagc acaagcaact gatttctcag accaagaaga
1621agcagtgggt aaataccagt cttttttacc caactttctt gtacaaagtg gttggtaagc
1681ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
1741ggcgcgttaa gtcgacaatc aacctctgga tta

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