Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11562
- Subject:
- NM_000186.4
- Aligned Length:
- 3699
- Identities:
- 527
- Gaps:
- 3120
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGACTTCTAGCAAAGATTATTTGCCTTATGTTATGGGCTATTTGTGTAGCAGAAGATTGCAATGAACTTCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCAAGAAGAAATACAGAAATTCTGACAGGTTCCTGGTCTGACCAAACATATCCAGAAGGCACCCAGGCTATCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATAAATGCCGCCCTGGATATAGATCTCTTGGAAATGTAATAATGGTATGCAGGAAGGGAGAATGGGTTGCTCTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATCCATTAAGGAAATGTCAGAAAAGGCCCTGTGGACATCCTGGAGATACTCCTTTTGGTACTTTTACCCTTAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGAGGAAATGTGTTTGAATATGGTGTAAAAGCTGTGTATACATGTAATGAGGGGTATCAATTGCTAGGTGAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTAATTACCGTGAATGTGACACAGATGGATGGACCAATGATATTCCTATATGTGAAGTTGTGAAGTGTTTACCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGACAGCACCAGAGAATGGAAAAATTGTCAGTAGTGCAATGGAACCAGATCGGGAATACCATTTTGGACAAGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTACGGTTTGTATGTAACTCAGGCTACAAGATTGAAGGAGATGAAGAAATGCATTGTTCAGACGATGGTTTTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGAGTAAAGAGAAACCAAAGTGTGTGGAAATTTCATGCAAATCCCCAGATGTTATAAATGGATCTCCTATATCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGAAGATTATTTATAAGGAGAATGAACGATTTCAATATAAATGTAACATGGGTTATGAATACAGTGAAAGAGG 740
Query 1 ------------------------------------------ATGT------------TGTTACTAATC----- 15
|||| |||.| |||||
Sbjct 741 AGATGCTGTATGCACTGAATCTGGATGGCGTCCGTTGCCTTCATGTGAAGAAAAATCATGTGA-TAATCCTTAT 813
Query 16 ------AATGTCG--TTCTGACCTT----------------------------------------GTG------ 35
||||..| |.||.||||| |||
Sbjct 814 ATTCCAAATGGTGACTACTCACCTTTAAGGATTAAACACAGAACTGGAGATGAAATCACGTACCAGTGTAGAAA 887
Query 36 -GGTT----TCCTG-------------TGC----TAATGGACAAG----------------------------- 58
|||| ||||| |.| .||||.|||||
Sbjct 888 TGGTTTTTATCCTGCAACCCGGGGAAATACAGCAAAATGCACAAGTACTGGCTGGATACCTGCTCCGAGATGTA 961
Query 59 ---TGAAACCTTGTGATTTTCCAGACATTAAACATGGAGGTCTATTTCATGAGAATATGCGTAGACCATACTTT 129
|||||||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 962 CCTTGAAACCTTGTGATTATCCAGACATTAAACATGGAGGTCTATATCATGAGAATATGCGTAGACCATACTTT 1035
Query 130 CCAGTAGCTGTAGGAAAATATTACTCCTATTACTGTGATGAACATTTTGAGACTCCTTCAGGAAGTTACTGGGA 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 1036 CCAGTAGCTGTAGGAAAATATTACTCCTATTACTGTGATGAACATTTTGAGACTCCGTCAGGAAGTTACTGGGA 1109
Query 204 TTACATTCATTGCACACAAAATGGGTGGTCACCAGCAGTACCATGTCTCAGAAAATGTTATTTTCCTTATTTGG 277
|.|||||||||||||||||.||||.|||||.||||||||||||||.||||||||||||||||||||||||||||
Sbjct 1110 TCACATTCATTGCACACAAGATGGATGGTCGCCAGCAGTACCATGCCTCAGAAAATGTTATTTTCCTTATTTGG 1183
Query 278 AAAATGGATATAATCAAAATTATGGAAGAAAGTTTGTACAGGGTAACTCTACAGAAGTTGCCTGCCATCCTGGC 351
||||||||||||||||||||.|||||||||||||||||||||||||.||||.|||.||||||||||||||||||
Sbjct 1184 AAAATGGATATAATCAAAATCATGGAAGAAAGTTTGTACAGGGTAAATCTATAGACGTTGCCTGCCATCCTGGC 1257
Query 352 TACGGTCTTCCAAAAGCGCAGACCACAGTTACATGTACGGAGAAAGGCTGGTCTCCTACTCCCAGATGCATCCG 425
||||.||||||||||||||||||||||||||||||||.||||||.|||||||||||||||||||||||||||||
Sbjct 1258 TACGCTCTTCCAAAAGCGCAGACCACAGTTACATGTATGGAGAATGGCTGGTCTCCTACTCCCAGATGCATCCG 1331
Query 426 TGTCAGAACATGCTCAAAATCAGATATAGAAATTGAAAATGGATTCATTTCCGAATCTTCCTCTATTTATAT-- 497
|||||.||||||.||.||||||..||||||.|||||.|||||.||.|||||.|||||| |..|||..||||
Sbjct 1332 TGTCAAAACATGTTCCAAATCAAGTATAGATATTGAGAATGGGTTTATTTCTGAATCT--CAGTATACATATGC 1403
Query 498 TTTAAATAAAGAAATA---CAATATAAATGTAAACCAGGATATGCAACAGCAGATGG---AAATTC-------- 557
.||| |||||||.| .|||||.||||.||||.||||||||.|||||||||||| ||..||
Sbjct 1404 CTTA---AAAGAAAAAGCGAAATATCAATGCAAACTAGGATATGTAACAGCAGATGGTGAAACATCAGGATCAA 1474
Query 558 -TTCAT-------ATATGGTTTTT--------------TGCATT---TCTTAT--------------------- 585
|.||| |.||||.|..| |||||| ||||.|
Sbjct 1475 TTACATGTGGGAAAGATGGATGGTCAGCTCAACCCACGTGCATTAAATCTTGTGATATCCCAGTATTTATGAAT 1548
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1549 GCCAGAACTAAAAATGACTTCACATGGTTTAAGCTGAATGACACATTGGACTATGAATGCCATGATGGTTATGA 1622
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1623 AAGCAATACTGGAAGCACCACTGGTTCCATAGTGTGTGGTTACAATGGTTGGTCTGATTTACCCATATGTTATG 1696
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1697 AAAGAGAATGCGAACTTCCTAAAATAGATGTACACTTAGTTCCTGATCGCAAGAAAGACCAGTATAAAGTTGGA 1770
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1771 GAGGTGTTGAAATTCTCCTGCAAACCAGGATTTACAATAGTTGGACCTAATTCCGTTCAGTGCTACCACTTTGG 1844
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1845 ATTGTCTCCTGACCTCCCAATATGTAAAGAGCAAGTACAATCATGTGGTCCACCTCCTGAACTCCTCAATGGGA 1918
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1919 ATGTTAAGGAAAAAACGAAAGAAGAATATGGACACAGTGAAGTGGTGGAATATTATTGCAATCCTAGATTTCTA 1992
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1993 ATGAAGGGACCTAATAAAATTCAATGTGTTGATGGAGAGTGGACAACTTTACCAGTGTGTATTGTGGAGGAGAG 2066
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2067 TACCTGTGGAGATATACCTGAACTTGAACATGGCTGGGCCCAGCTTTCTTCCCCTCCTTATTACTATGGAGATT 2140
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2141 CAGTGGAATTCAATTGCTCAGAATCATTTACAATGATTGGACACAGATCAATTACGTGTATTCATGGAGTATGG 2214
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2215 ACCCAACTTCCCCAGTGTGTGGCAATAGATAAACTTAAGAAGTGCAAATCATCAAATTTAATTATACTTGAGGA 2288
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2289 ACATTTAAAAAACAAGAAGGAATTCGATCATAATTCTAACATAAGGTACAGATGTAGAGGAAAAGAAGGATGGA 2362
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2363 TACACACAGTCTGCATAAATGGAAGATGGGATCCAGAAGTGAACTGCTCAATGGCACAAATACAATTATGCCCA 2436
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2437 CCTCCACCTCAGATTCCCAATTCTCACAATATGACAACCACACTGAATTATCGGGATGGAGAAAAAGTATCTGT 2510
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2511 TCTTTGCCAAGAAAATTATCTAATTCAGGAAGGAGAAGAAATTACATGCAAAGATGGAAGATGGCAGTCAATAC 2584
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2585 CACTCTGTGTTGAAAAAATTCCATGTTCACAACCACCTCAGATAGAACACGGAACCATTAATTCATCCAGGTCT 2658
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2659 TCACAAGAAAGTTATGCACATGGGACTAAATTGAGTTATACTTGTGAGGGTGGTTTCAGGATATCTGAAGAAAA 2732
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2733 TGAAACAACATGCTACATGGGAAAATGGAGTTCTCCACCTCAGTGTGAAGGCCTTCCTTGTAAATCTCCACCTG 2806
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2807 AGATTTCTCATGGTGTTGTAGCTCACATGTCAGACAGTTATCAGTATGGAGAAGAAGTTACGTACAAATGTTTT 2880
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2881 GAAGGTTTTGGAATTGATGGGCCTGCAATTGCAAAATGCTTAGGAGAAAAATGGTCTCACCCTCCATCATGCAT 2954
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2955 AAAAACAGATTGTCTCAGTTTACCTAGCTTTGAAAATGCCATACCCATGGGAGAGAAGAAGGATGTGTATAAGG 3028
Query 586 -------------------------------------------------------------------------- 585
Sbjct 3029 CGGGTGAGCAAGTGACTTACACTTGTGCAACATATTACAAAATGGATGGAGCCAGTAATGTAACATGCATTAAT 3102
Query 586 -------------------------------------------------------------------------- 585
Sbjct 3103 AGCAGATGGACAGGAAGGCCAACATGCAGAGACACCTCCTGTGTGAATCCGCCCACAGTACAAAATGCTTATAT 3176
Query 586 -------------------------------------------------------------------------- 585
Sbjct 3177 AGTGTCGAGACAGATGAGTAAATATCCATCTGGTGAGAGAGTACGTTATCAATGTAGGAGCCCTTATGAAATGT 3250
Query 586 -------------------------------------------------------------------------- 585
Sbjct 3251 TTGGGGATGAAGAAGTGATGTGTTTAAATGGAAACTGGACGGAACCACCTCAATGCAAAGATTCTACAGGAAAA 3324
Query 586 -------------------------------------------------------------------------- 585
Sbjct 3325 TGTGGGCCCCCTCCACCTATTGACAATGGGGACATTACTTCATTCCCGTTGTCAGTATATGCTCCAGCTTCATC 3398
Query 586 -------------------------------------------------------------------------- 585
Sbjct 3399 AGTTGAGTACCAATGCCAGAACTTGTATCAACTTGAGGGTAACAAGCGAATAACATGTAGAAATGGACAATGGT 3472
Query 586 -------------------------------------------------------------------------- 585
Sbjct 3473 CAGAACCACCAAAATGCTTACATCCGTGTGTAATATCCCGAGAAATTATGGAAAATTATAACATAGCATTAAGG 3546
Query 586 -------------------------------------------------------------------------- 585
Sbjct 3547 TGGACAGCCAAACAGAAGCTTTATTCGAGAACAGGTGAATCAGTTGAATTTGTGTGTAAACGGGGATATCGTCT 3620
Query 586 ------------------------------------------------------------------------- 585
Sbjct 3621 TTCATCACGTTCTCACACATTGCGAACAACATGTTGGGATGGGAAACTGGAGTATCCAACTTGTGCAAAAAGA 3693
