Construct: ORF ccsbBroad304_11562

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008269.1_s304c1, BRDN0000404003
Derived from:
ccsbBroadEn_11562
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CFHR3 (10878)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11562
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10878 CFHR3 complement factor H related 3 NM_001166624.1 65.8% 56.3% (many diffs)
2 human 10878 CFHR3 complement factor H related 3 XR_241062.3 59.7% (many diffs)
3 human 10878 CFHR3 complement factor H related 3 NM_021023.5 58.4% 56.6% (many diffs)
4 human 10878 CFHR3 complement factor H related 3 XR_426757.2 52.7% (many diffs)
5 human 10877 CFHR4 complement factor H related 4 XM_017000113.1 38.5% 29.4% (many diffs)
6 human 10877 CFHR4 complement factor H related 4 XM_017000112.1 37.7% 28.8% (many diffs)
7 human 10877 CFHR4 complement factor H related 4 XM_017000111.1 34% 26% (many diffs)
8 human 10877 CFHR4 complement factor H related 4 XM_017000110.1 33.9% 26% (many diffs)
9 human 10877 CFHR4 complement factor H related 4 NM_006684.5 32.4% 28.4% (many diffs)
10 human 10878 CFHR3 complement factor H related 3 XR_001736938.1 32.4% (many diffs)
11 human 10878 CFHR3 complement factor H related 3 XR_002958987.1 32.1% (many diffs)
12 human 10877 CFHR4 complement factor H related 4 NM_001201551.2 30.6% 23.3% (many diffs)
13 human 10877 CFHR4 complement factor H related 4 NM_001201550.3 30.5% 23.3% (many diffs)
14 human 10877 CFHR4 complement factor H related 4 XM_006711129.3 29.3% 22.1% (many diffs)
15 human 3075 CFH complement factor H NM_001014975.2 27.5% 22.9% (many diffs)
16 human 3075 CFH complement factor H XM_017001108.2 27.3% 22.9% (many diffs)
17 human 10878 CFHR3 complement factor H related 3 XR_001736937.1 26.4% (many diffs)
18 human 3075 CFH complement factor H NM_000186.4 14.2% 11.5% (many diffs)
19 human 3075 CFH complement factor H XR_001737134.2 12.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
651
ORF length:
585
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt gttactaatc aatgtcgttc tgaccttgtg ggtttcctgt gctaatggac
121aagtgaaacc ttgtgatttt ccagacatta aacatggagg tctatttcat gagaatatgc
181gtagaccata ctttccagta gctgtaggaa aatattactc ctattactgt gatgaacatt
241ttgagactcc ttcaggaagt tactgggatt acattcattg cacacaaaat gggtggtcac
301cagcagtacc atgtctcaga aaatgttatt ttccttattt ggaaaatgga tataatcaaa
361attatggaag aaagtttgta cagggtaact ctacagaagt tgcctgccat cctggctacg
421gtcttccaaa agcgcagacc acagttacat gtacggagaa aggctggtct cctactccca
481gatgcatccg tgtcagaaca tgctcaaaat cagatataga aattgaaaat ggattcattt
541ccgaatcttc ctctatttat attttaaata aagaaataca atataaatgt aaaccaggat
601atgcaacagc agatggaaat tcttcatata tggttttttg catttcttat tacccaactt
661tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
721agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)