Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11562
Subject:
XR_001736937.1
Aligned Length:
2199
Identities:
581
Gaps:
1615

Alignment

Query    1  -----------------------------------------------------------------------ATG  3
                                                                                   |||
Sbjct    1  AATGAAAGATTTCAAACCCCAAACAGTGCAACTGAAACTTTTGTATTAGCATACTACTGAGAATATCTAACATG  74

Query    4  TTGTTACTAATCAATGTCGTTCTGACCTTGTGGGTTTCCTGTGCTAATGGACAAGTGAAACCTTGTGATTTTCC  77
            ||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TTGTTACTAATCAATGTCATTCTGACCTTGTGGGTTTCCTGTGCTAATGGACAAGTGAAACCTTGTGATTTTCC  148

Query   78  AGACATTAAACATGGAGGTCTATTTCATGAGAATATGCGTAGACCATACTTTCCAGTAGCTGTAGGAAAATATT  151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGACATTAAACATGGAGGTCTATTTCATGAGAATATGCGTAGACCATACTTTCCAGTAGCTGTAGGAAAATATT  222

Query  152  ACTCCTATTACTGTGATGAACATTTTGAGACTCCTTCAGGAAGTTACTGGGATTACATTCATTGCACACAAAAT  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ACTCCTATTACTGTGATGAACATTTTGAGACTCCTTCAGGAAGTTACTGGGATTACATTCATTGCACACAAAAT  296

Query  226  GGGTGGTCACCAGCAGTACCATGTCTCAGAAAATGTTATTTTCCTTATTTGGAAAATGGATATAATCAAAATTA  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGGTGGTCACCAGCAGTACCATGTCTCAGAAAATGTTATTTTCCTTATTTGGAAAATGGATATAATCAAAATTA  370

Query  300  TGGAAGAAAGTTTGTACAGGGTAACTCTACAGAAGTTGCCTGCCATCCTGGCTACGGTCTTCCAAAAGCGCAGA  373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGGAAGAAAGTTTGTACAGGGTAACTCTACAGAAGTTGCCTGCCATCCTGGCTACGGTCTTCCAAAAGCGCAGA  444

Query  374  CCACAGTTACATGTACGGAGAAAGGCTGGTCTCCTACTCCCAGATGCATCCGTGTCAGAACATGCTCAAAATCA  447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCACAGTTACATGTACGGAGAAAGGCTGGTCTCCTACTCCCAGATGCATCCGTGTCAGAACATGCTCAAAATCA  518

Query  448  GATATAGAAATTGAAAATGGATTCATTTCCGAATCTTCCTCTATTTATATTTTAAATAAAGAAATACAATATAA  521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATATAGAAATTGAAAATGGATTCATTTCCGAATCTTCCTCTATTTATATTTTAAATAAAGAAATACAATATAA  592

Query  522  ATGTAAACCAGGATATGCAACAGCAGATGGAAATTCTTCA--------TATATGGTTT----------------  571
            ||||||||||||||||||||||||||||||||||||||||        ||.|| ||||                
Sbjct  593  ATGTAAACCAGGATATGCAACAGCAGATGGAAATTCTTCAGGATCAATTACAT-GTTTGCAAAATGGATGGTCA  665

Query  572  ----------TTTGCATTTCT-----TAT---------------------------------------------  585
                      ||||||||.||     |||                                             
Sbjct  666  GCACAACCAATTTGCATTACTGCTTGTATTGCATTCCGTGCTCACGCTCAGAAAAGTTGTACATGTCGGGGGAG  739

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct  740  AAATGAGTGCTTAATTCTGAATTTCTGCTAGCGTCAGGAGAATCAGACCTTAATAATTTGTATCAATGATGCTA  813

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct  814  CTGAGGATATCCAATCAAAAAATTATCTCTACCCTATTGTTTACTACAGAGAAAACAAGTAAAGGAAAAGGGTA  887

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct  888  AGTGGGTGGGCTGAATGTTTACAAACCTCATACTTGCCAATGGATTCTTTACATGTAAAGTTCTCTGAACGTGC  961

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct  962  TCGACCTTTACTTAGTATGATAAAGAGAATGCATAATGAACAAAGGAAATCTTTCAGTGGCAAAAGTTGATTTT  1035

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1036  TTTTCTTTCCTCTTTATATATTCACAAAGAGTTTTAAAGATAAATTGCTGAATGTATTTTTAACCCAAATACTG  1109

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1110  TTGTATAATTTACATACTCCCAAATCCACTTCATTTTCAAGGGTACAATTCAACTATTTTTAGTCATGAGATAA  1183

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1184  TATGGAACCTTGATACATAATACAACATGGAAGACTCTCAAAAATATTAAGCTAAGAGAGAAAAAAGATACACT  1257

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1258  TACAAAGTGATTATCTCAATGTTATCATGAGTTTTGGGGGTTATATGAATTCCTACATTTCTAGAATACTGTTT  1331

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1332  TCAATTTCTATACTTATCAAGGGCTCTGTGTAAAGAAAAAGGTGTATACTTCAATTTTACTCAGCTTTGATAAA  1405

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1406  TGATCTACTTTAAAACTTGTGAAATAAAAGACAGGATGCTTCATAAATTTTATAGAACTTATATCCAATTAATA  1479

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1480  TAATTTTTATCTAATATATACACCCTTACTGTTAGTAAATCGTTACATAACTACATAAATGGTTACATTAACTT  1553

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1554  TTAAATTCACAAATTTAAAAGCGGTTTAAGCTCCGTGACACATTGGACTACGAATGCTACGATGGATATGAAAT  1627

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1628  CAGTTATGGAAACACCACAGGTTCCATAGTGTGTGGTGAAGATGGGTAGTCCCATTTCCCAACATGTTATAGTA  1701

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1702  AGTATTTTATTCAAGTATTTTTTATTAGAATTAAATAAAATAATAAATAGACACCTACATATGTATATGTACAC  1775

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1776  ATATGTGTGTACATATATGTACATATATATGTAGTCCTCCTATGAGTGTGAATTATCTTGAGACTTAAAAAGAA  1849

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1850  AAAACAACGTTGAAAATGCAGATGTCTTCCTAAGAAATCAAATAAGATACAGTTAAGAGTATATAAAAAGCTTT  1923

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1924  ATTTAGAAAGTTTCCAATAAGACTATTGATTTTTCCCCACATATAAAGTATTTTTTTTCAGATTCTTCAGAAAA  1997

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1998  GTGTGGGCCTCCTCCACCTATTAGCAATGGTGATACCACCTCCTTTCTACTAAAAGTGTATGTGCCACAGTCAA  2071

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 2072  GAGTCGAGTACCAATGCCAGCCCTACTATGAACTTCAGGGTTCTAATTATGTAACATGTAGTAATGGAGAGTGG  2145

Query  586  -----------------------------------------------------  585
                                                                 
Sbjct 2146  TCGGAACCACCAAGATGCATACATCCATGTATAATAACTGAAGAAAACATGAA  2198

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