Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11611
Subject:
NM_001289616.1
Aligned Length:
1398
Identities:
1094
Gaps:
237

Alignment

Query    1  ATGAAGGAGCCGGATGCCATCAAGCTGTTTGTGGGGCAGATCCCGAGGCACCTGGAGGAGAAGGACCTGAAGCC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CATCTTCGAACAGTTTGGTCGGATCTTTGAGCTGACTGTCATCAAGGACAAGTACACCGGGCTGCACAAGGGAT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  GTGCCTTCCTGACATACTGTGCCCGGGATTCAGCCCTGAAGGCCCAGAGCGCCCTGCACGAACAGAAGACGCTT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CCAGGGATGAACAGGCCGATCCAGGTCAAGCCAGCCGACAGCGAGAGCCGAGGAGAAGACCGGAAGCTCTTTGT  296
                  |||||||||||||||||||||||||||||||||||||||||.|||||   ||||||||||||||||||
Sbjct    1  ------ATGAACAGGCCGATCCAGGTCAAGCCAGCCGACAGCGAGAGTCGAGG---AGACCGGAAGCTCTTTGT  65

Query  297  GGGGATGCTAGGGAAGCAGCAGACAGATGAGGACGTCCGGAAGATGTTTGAGCCCTTCGGGACCATCGACGAGT  370
            |||.||||||||.||||||||||||||||||||.|||||||||||||||||.||.||.|||||.||.|||||||
Sbjct   66  GGGCATGCTAGGAAAGCAGCAGACAGATGAGGATGTCCGGAAGATGTTTGAACCATTTGGGACTATAGACGAGT  139

Query  371  GCACTGTGCTCCGGGGGCCAGATGGCACCAGCAAAGGCTGCGCCTTCGTGAAGTTCCAGACCCACGCTGAGGCC  444
            ||||||||||||||||||||||.||.||||||||||||||.|||||.||||||||||||||.||||||||||||
Sbjct  140  GCACTGTGCTCCGGGGGCCAGACGGTACCAGCAAAGGCTGTGCCTTTGTGAAGTTCCAGACTCACGCTGAGGCC  213

Query  445  AAGGCGGCCATCAACACCCTTCACAGCAGCCGGACCCTGCCAGGTGCCTCGTCCAGCCTGGTGGTGAAGTTTGC  518
            .||||.||||||||||||||||||||||||||||||||.||.||||||||.||||||||||||||.||||||||
Sbjct  214  CAGGCAGCCATCAACACCCTTCACAGCAGCCGGACCCTACCGGGTGCCTCATCCAGCCTGGTGGTAAAGTTTGC  287

Query  519  TGACACTGAGAAGGAGCGAGGTCTCCGCCGCATGCAGCAGGTGGCCACCCAGTTGGGCATGTTCAGCCCCATCA  592
            ||||||.||||||||||||||||||||.||.||||||||||||||.||||||.||||||||||||||||.|||.
Sbjct  288  TGACACGGAGAAGGAGCGAGGTCTCCGTCGAATGCAGCAGGTGGCTACCCAGCTGGGCATGTTCAGCCCGATCG  361

Query  593  CCCTCCAGTTTGGAGCCTACAGCGCCTACACCCAGGCCCTGATGCAGCAGCAGGCGGCCCTGGTAGCGGCTCAC  666
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct  362  CCCTCCAGTTTGGAGCCTACAGCGCCTACACCCAGGCCCTGATGCAGCAGCAGGCGGCCCTGGTAGCAGCTCAC  435

Query  667  AGTGCCTACCTCAGCCCCATGGCCACCATGGCTGCCGTGCAGATGCAGCACATGGCTGCCATCAATGCCAATGG  740
            |||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct  436  AGTGCCTACCTCAGCCCTATGGCCACCATGGCTGCCGTGCAGATGCAGCACATGGCTGCCATCAGTGCCAATGG  509

Query  741  CCTCATCGCCACCCCCATCACCCCATCCTCAGGAACCAGCACCCCTCCTGCCATCGCTGCCACGCCTGTCTCTG  814
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||.|||||||
Sbjct  510  CCTCATCGCCACCCCCATCACTCCATCCTCAGGAACCAGCACCCCTCCTGCCATTGCTGCCACGCCCGTCTCTG  583

Query  815  CCATTCCGGCTGCCCTGGGCGTCAACGGCTACAGCCAGGTGCCCACCCAGCCCACTGGGCAGCCTGCCCCTGAT  888
            ||||.||.||||||.|||||||||||||||||||||.|||||||||||||||.||.||||||||||||||.|||
Sbjct  584  CCATCCCTGCTGCCTTGGGCGTCAACGGCTACAGCCCGGTGCCCACCCAGCCTACAGGGCAGCCTGCCCCGGAT  657

Query  889  GCTCTGTATCCCAACGGGGTTCACCCCTACCCAGCCCAGAGCCCCGCGGCCCCCGTGGACCCCCTGCAGCAGGC  962
            ||||||||||||||||||||||||||.|||||||||||||||||.||.||||||||||||||.||.||||||||
Sbjct  658  GCTCTGTATCCCAACGGGGTTCACCCTTACCCAGCCCAGAGCCCGGCAGCCCCCGTGGACCCTCTCCAGCAGGC  731

Query  963  CTACGCGGGGATGCAGCACTACA---CAGCCTACCCAGCAGCCTACAGCCTGGTTGCACCTGCGTTCCCGCAGC  1033
            |||.||.||.|||||||||||||   ||||.|||||.|||||||||||||||||||||||||||||||||||||
Sbjct  732  CTATGCAGGAATGCAGCACTACACAGCAGCGTACCCCGCAGCCTACAGCCTGGTTGCACCTGCGTTCCCGCAGC  805

Query 1034  CTCCAGCCCTGGTCGCCCAGCAGCCCCCACCACCACCTCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAG---  1104
            |||||||||||||.||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||   
Sbjct  806  CTCCAGCCCTGGTTGCCCAGCAGCCCCCACCACCACCTCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAA  879

Query 1105  CAGCAGCAGCAAAGAGAAGGCCCTGATGGCTGCAACATCTTCATCTACCACCTGCCCCAGGAGTTCACTGACTC  1178
            ||||||||||||.|.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct  880  CAGCAGCAGCAACGGGAAGGCCCTGATGGCTGCAACATCTTCATCTACCACCTGCCCCAGGAGTTCACAGACTC  953

Query 1179  AGAGATCCTCCAGATGTTTGTCCCCTTTGGCCACGTCATCTCAGCCAAAGTCTTTGTTGACCGAGCCACCAATC  1252
            ||||||||||||||||||||||||.|||||.||.|||||||||||||||||||||||||||||.||||||||||
Sbjct  954  AGAGATCCTCCAGATGTTTGTCCCTTTTGGTCATGTCATCTCAGCCAAAGTCTTTGTTGACCGGGCCACCAATC  1027

Query 1253  AAAGCAAATGTTTTGGCTTTGTGAGTTTCGACAATCCGGCCAGTGCCCAGGCTGCCATCCAGGCCATGAATGGC  1326
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.
Sbjct 1028  AGAGCAAATGTTTTGGCTTTGTGAGTTTCGACAATCCGGCCAGTGCCCAGGCTGCCATCCAGGCTATGAACGGT  1101

Query 1327  TTCCAGATCGGCATGAAGCGCCTCAAAGTCCAGCTAAAGCGGCCTAAGGATGCCAACCGGCCCTAC  1392
            ||||||||.||||||||||||||||||||||||||||||||||||||||||||.|||.||||||||
Sbjct 1102  TTCCAGATTGGCATGAAGCGCCTCAAAGTCCAGCTAAAGCGGCCTAAGGATGCAAACAGGCCCTAC  1167

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