Transcript: Mouse NM_001289616.1

Mus musculus CUGBP, Elav-like family member 3 (Celf3), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Celf3 (78784)
Length:
2534
CDS:
272..1441

Additional Resources:

NCBI RefSeq record:
NM_001289616.1
NBCI Gene record:
Celf3 (78784)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001289616.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000098695 CCTGGCTTCAAGAGCCTATTT pLKO.1 1637 3UTR 100% 13.200 10.560 N Celf3 n/a
2 TRCN0000439110 ATGCAAACAGGCCCTACTAAG pLKO_005 1422 CDS 100% 10.800 8.640 N Celf3 n/a
3 TRCN0000098697 GTTTGAACCATTTGGGACTAT pLKO.1 382 CDS 100% 4.950 3.960 N Celf3 n/a
4 TRCN0000436726 AGCCCATCTTCGAGCAGTTTG pLKO_005 114 5UTR 100% 10.800 7.560 N Celf3 n/a
5 TRCN0000005729 GCGCCTCAAAGTCCAGCTAAA pLKO.1 1390 CDS 100% 10.800 7.560 N CELF3 n/a
6 TRCN0000418643 GCGCCTCAAAGTCCAGCTAAA pLKO_005 1390 CDS 100% 10.800 7.560 N Celf3 n/a
7 TRCN0000422671 GCTTTGTGAGTTTCGACAATC pLKO_005 1314 CDS 100% 10.800 7.560 N CELF3 n/a
8 TRCN0000431535 GCTTTGTGAGTTTCGACAATC pLKO_005 1314 CDS 100% 10.800 7.560 N Celf3 n/a
9 TRCN0000098699 CTTCGAGCTGACTGTCATCAA pLKO.1 142 5UTR 100% 4.950 3.465 N Celf3 n/a
10 TRCN0000098696 CCTCCAGATGTTTGTCCCTTT pLKO.1 1231 CDS 100% 4.050 2.835 N Celf3 n/a
11 TRCN0000098698 CTATGCAGGAATGCAGCACTA pLKO.1 1003 CDS 100% 4.050 2.835 N Celf3 n/a
12 TRCN0000005730 GCTGACTGTCATCAAGGACAA pLKO.1 148 5UTR 100% 4.050 2.835 N CELF3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001289616.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11611 pDONR223 100% 78.2% 82.1% None (many diffs) n/a
2 ccsbBroad304_11611 pLX_304 0% 78.2% 82.1% V5 (many diffs) n/a
3 TRCN0000475880 TCGTGGCATCAAGGAAGATTCACG pLX_317 23.5% 78.2% 82.1% V5 (many diffs) n/a
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