Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001737530.1
- Aligned Length:
- 4520
- Identities:
- 173
- Gaps:
- 4322
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCAGGGACTCTGACTGCGCAAGATGGAGTGTAGGCCGGCCGGCGAGACTGCACCTCCCAGCATGCCTTGCAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAGATTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTATACCCCATG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATAT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAAC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAAT 3330
Query 1 ------------------------------------------------------------------ATGGAGTC 8
||||.|||
Sbjct 3331 TGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTC 3404
Query 9 TCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGC 82
||||.||.||.||||||||||||||||||||||.||.||.||||||||||||||||.|||||||||||||||||
Sbjct 3405 TCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGC 3478
Query 83 AATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAATTTTTGCATT 156
||||||||..||||||||||||||||||||||||||||||.|.||..|||||||.||..|.|||||||||.|||
Sbjct 3479 AATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATT 3552
Query 157 TTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT-------------------------------- 198
||||||.||||.|||.|||..||||||||||||||.||||||
Sbjct 3553 TTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGC 3626
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3627 CTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGT 3700
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3701 ATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGA 3774
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3775 TATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCA 3848
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3849 TTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAA 3922
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3923 ACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCA 3996
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3997 TTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATT 4070
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4071 ATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTAT 4144
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4145 CCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAA 4218
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4219 TTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGG 4292
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4293 TAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTT 4366
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4367 GTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGT 4440
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4441 TCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATA 4514
Query 199 ------ 198
Sbjct 4515 CTCGTA 4520
