Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001741930.1
- Aligned Length:
- 6348
- Identities:
- 160
- Gaps:
- 6169
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCTGCCTTGGGCTCCTGAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTTTTCAGATAAGTAGATATTAAGTGACTGACTGAGTAAAGGGATACACTGGATCTATGGAAGTCTTGATCCAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAGCTCTCCATTGTCCAGTCAGACTCCCTTTTCCATCTCCAGGGCAGACCAGGGCATGGTATAAACTGACTCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTCCTTGTGTGTAATACAGTGTCTTCCTAGAGAGGGCGTCTGTCATTCCACCCCCAGGGACTGCTTGGCATCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGTGGCAGGGGCCATGCTGTTCCCCGCTGGGAGCACCATCCTACAGTAATCTCTGTGCAGGATGCTATTATAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAAGACTTGGGACTTTGTCCCCACTCTGCAACCTCACACCCCAAACTGGGAAGGTGCTGAGAAACCGAAGATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGCTCGGACAAGTCCAGCTTGGCCAGTAGATGACTCTATTGAGGGCCCTCCTGGGTGGCGGCAGGACAGCTCTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGTTCGCACTGCTGCCATCACTAAGCAAAGTCTCTGGTTCCTGGCCTGCTGTGTGTGATGGGACTGCCTTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGGTAGGTTCCCAGATACTCCCAGGGACACACGCTCCTCGCTGGGCCCCCCTGGCCTTGGCTCCTTGCCTGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTTCAGGGTTCAGGCAGTGGACATCCACCCCACGTGACATGGTGGGACACCTGTCACACCACCGATGCCCCTGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGATGGGCCACGCAACAGCCCTCGGGCCTTCCTGTCTCAGAGCAGGGCTGATCACAGTCAGGCCCACTGCAGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAGAAAGACTGTGCAGAGCTAGACGCTGGACTCGGATCCTCTCTAGCGTGGGACAGGCACTGGGCACCCAGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCTGCAGTTCCTGAGAGAGGGCAGCCCCAGAGTCAGAATCAAGGTGTCAATAATAGGAGAAACGATGGTGGGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGGAGACCAAGGCATTAATATAGGAACTCTGTATACTTTCCAGTCAATTTTTCCATAAAACTAAAACTGCTCTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAAAAGGAGTCTGTTAATTTTTTAAAATCTCAAAAAGAATGTGGCTGGTGCCACAATGAACAATTTGAGTGAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGCTACTCAACGAGGTCAGAGGCATCAGAGAGGAAGAACACAGCAGCCTGTTTTCTTTGCTGCTCTTTACCGTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGAAAGAACACTTTTACAACAGACTCTGTTTGAGGACAAACGCTCCACATTTTTGCCCGCTGGCAGCAGTCATA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AATTATGAGATTTCTGAGGGGCACAAAACTGCAGCGGTCTAAACCAGGCAACAAAAATCAGCCAAGTCCTTATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGGATCCCCTACAAATTCTATTGACTTTTTTGGATCTGTTTGTCCCTAGGTGTGAACTAGGGAAAAGTCAGGCG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGTCTGCCTTGCTAGTATATTTAAAAGAGGATCTTGGAGAATTTGAAAGAAAATGTGGAAGAAGAAATGACAGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCTTGGTGAAAGTCAGCAGAAGGGCTTGATAATGGAACAGACTAAGGGTGGTGGATAGTTTTAAGGTTGAGAGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAAATGGAATTAAAAAAAAGGGAGATATTCCTGGGGGCTTGAAGCAAGAAGCAGCAGCCGAGAGCAGCGCTGAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGGATGTGAAGGGAGCTTGGTGCGGAGGGCAGTGCTTCCTATGAGAAAAAGTCCAGTGGTCAATCTTTTGGGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGGAGCTGGTGGGATGAGGGGGCAGCTGGACTGACCTGAGTGCTGTTGTACTGTCTGACCATCTCCTTTGTAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGACGCTCCACACTCATGCTCAGAGCAGCATTATTCACAGCAGCCAGGAGGGGGACGTCGCCCAGGTGTTCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CGGTGGATGAATGGATAAAGAAAATGTAAACACACAGTGGAATCTTACTCAGCCTTGAAAAGGAAGGAAAGTCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATCCAACACATGCTACTGCATGGACGAACTTTGGACAGTGAGCTAAGTGAAAGGAGACAGTCACAAAAGGACAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATACCAGATGATCCCACCTGCGCGAGATGATATCACGCCACCCCCTTCCCAGTGGCTAAAAGGCAATTTAATAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCAGAAGCTCTGCTAGAACAGCATTAGGTTATGACATGAGGAAATGGAAAAAAAACATCTAAGCCCAAACTCTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCCTTCAGCCGTCCTCCTGAGACAGCGTGCTGCTGTCAGCCAAGGACAGAGTGGGCACGCTGGGGTTCTTGGGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TCAGCAAACAACAGGAAAACTGAGGCAACTTCAGCTGCTTACAAGAGAGAGACACAAGATTCACATGAGTTCCT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AAGTTCAAGTTGGCTGAGGGGCTCAAGGGACTCACCGCGTCCCTCCCTCACTCCGGCAGATGCTGGGACGCTTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CAGACAGCCCCGGACATAGGGGGAGAGGGAGAGGCATGGAAACCCTCTTACCTTAGCCCCTCAGAAAGGTGCCT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCACTCATTGGTGACTCCCTCACTTAGCCATTAAATGTCACTACAGCCCGTTCGCACAGGGGAGAGAATCTACA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCTAGCAGTAAAAAAAGGTGATGAAATGAAAGAAGTTGTGAAATGACATTTTTTTCCAGCAGGTTTGTCATATC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCCTGCATGGAGGAAAATTGCTTTCTGTAAATCTTGGTCCAACAGAACAAAACACCTATTTCTTTCCAGTTGGG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGGACAGCCATTCTCATCGGTATAATGAACGTATTGTAAGCTGTGACTTTTACAAAGTCTGAGGGAAACCAATC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGCAATCTTGACAGATACGATCTTTCCAGATGCACTGTTCGTTTACGGCGGCAAGAGAGCTCAATTAATTTCTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGGGAGGACGGCAGGATGCGACCCCTTGTGCGTGGCCTAGGAGGAACTGTCCCTGTGTGAATTTATGTTCTGGT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AATTTAAAAAGATTTATATTAAGCTTTTCTTTCATTTTGAGAGTAGATTAAAATTCTAATGGAAACCATTTGTA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TGCATTTGTTGAATTGAAGAGTATTTATGGCTGTGTAAAAAAAATGCTGCAAAATTCTGCCGATAATAAAGTCA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GTGAAGCAAGAATAAGTGTAAAAACAGGAAGGAAATACGCGATAGAAACCATACTGTATTATACAAGTATAATG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGGGAGGCAAGCCGAGCAGAACGGGGCAGGGATTAGGCCCCCGGATGGGATAGTTTTTCTTATTTAGTGTAAGG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTTTTGTAGCCCTTTTATGACTTAAAACAAAATTTAAATTTTGAAACAGGCCAGGTCAGTCTGCACAGACCCCA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TGGCCACATCACTGTGTCACATCATTCTTGAACTCCTGCCGGTGTCTAGGACAAACAGGCAGGAAAGAAAATCC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AAGCGGCGTCTCAGAGAAAAGATGCTGATGGCAGGAAAAGAAGACCCATGAAACAGGAGGCGGGGGTCAGCGAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CAAGGTGAAAATCAGAGCCCCGGAGTGCAGTGCAGGTGGAAGAGAGGTAGCAAAACCAGGGAAGTCGCCGTGCT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CGGGACAGTCCAGTGTGTCCCTGGCATCCCCAGTCATTGCCGTGGCCACCTGATCAGAACCTGTACAGAAGCTG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CCCCATCTCCTCCACGGTGAGGGCCAAGTTGCATGTGCCACAGCCCTGTCGGTGACCTTTCTGCGGGCTGGGGA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AGCAGAGACAACGGCCTGACAATCTGCAGGCACAGCCATCCAAGGGGACAGGGTCCATGCAACAGCCACCAGAG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AAAGCTCCTCACTGCCACCTTTGCAGAGGGAGAAAAGCAGAAAGCATCGTGGAGGCCCTTTATCATGTTGGAAG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GCCAGAGACATTTGGCATTCCGTCAAGGTCCATCTTAGAGTTGAGAGAGAGTTTCACCAGGAAACTCACATTCT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 CTCAGAACTAGCAGCCGTGATCGCATGTCGAAGTCAGGCAACGCCAAGCGTGATGGTTAACAGCGCTAAGACAG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GAGAAAATGGAAATTCCCTGAGAGTCCACTGCTCTGCTCCTGCGGCGGTGCTTTTCCCCCTCGTTGTAAGCATG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 CTCTTTACCAGAGCTGCACGGATGTCATAAACTGCCTCACGATGCACTAGAGCAGAATCGTGCGTTAGCAAATT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TCACAGATGCAAAGTGGGATTTCTGTCAATGGAAGCCTGCATGGAAAATACGGAACAGCTTAAGAAAGTACTGT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CTTCTCTCAAAATTCCACAGGAGCCTGAAATGCAGGGGTTCCGGCCTAGGCGTTTTTTGAGGCAAATAACGTCG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CCACACGGCCGAGATACAGGCCCCTTTTTGCCCCATGAGACTTACTGGCCTCAGAGTCCGGCCGCTTCTGTTTT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 GTTTCTTCATGTATCCTTGGCTTCTAGCGCAGTTCCTGGTACACAGCAGGCGCTCAATACATATTTGCTGAGCT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 AAGCAAATATGTCCTAGGCCCTGTGGAAGATACGACATGAGGAAGACCAGGTCCCTGCCAAAAAGGCACCGAGG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GCCCAGGCTGGGGAGGGTAGTGCTGACATCGAGTAGGCCTTCAGCTCTGACCCCAGCTTCATTTTAAGTGACTA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 GGAACAAATTCTCAAAACTTCTTTTCTATCAACTCTTCTTCACCCCCAATATCACAGCACAACTGTCTGTCATT 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GATGGAGTTCCTGCAATAAGACAAGCGCTAGAAGTTTACCATATTTGTATCCTTACTGGATTCCCAAATTAATC 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 CTAGTAAGCAAGTGACATGATTGTTTTTAGTAGAGACAGGGTTTCACTTTGTTGGCCAGGCTAGTCTTGAACTC 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 CTGACCTCAAGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTAGGAAAATGAATACTTTTGCAAGCAC 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 AATGACAGGAGTGTCAAAGGAGGTAGGCTCCACACTCTGATGTCTCTTTATCAGTGAGGCCTTTTCTGACTCCC 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 TCACATGAAGAGCAAACTCACTTCCCTTGTGCCAAAGCACTCAACATATATGACATCCCACACGGGGTAGGCTG 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 AATCGTGGCCCTTAAAGTATGTCCATGTTCCAATCCTTAGAACATGTGAATGTATTACCTTATGTGGCAAAATG 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 GACTTTGCAGACATGATTAAGTTAAGGATCTTGAGATTTCAGGAAAATTATCTTGGATCATTCAGGTAGGCCTG 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 ACATAATCACAAGAGCCCTTACAAGAGAGAGGCAGGAGGCCAGAGGCAGAGAGCTACACTGCGGAGCTGCTTTG 5180
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5181 CAGATGGAGGAAGGGGCCACCGAGACCTGAGAAAGTCAAGGAGACAGATTCTCCCCTGGAGCCTCCAGAGGGAA 5254
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5255 CCAGCCCTGCTCACACCGTCATTTCAGCCCTGCAAGACTTGTTTGGGCTTCTGACGTCAAGAACTGGGACAGAA 5328
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5329 TGAATTTGTGATGTTTTAGGCCACTAGATCTGTGGTAATGTGTTATAGCAGAAATAGGAAACTAACACAACTCA 5402
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5403 TCTCTACTTGTGTATATGTTTGTTATCCGTCTTCCTCTGCTGGGACATGAAATCCGCAACAAGTGGAGGCAAAG 5476
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5477 CCAGGGACTTTGTCTATTATGTTGACTGGCATCCTTAGTGCTCAGAACAGAGCTCAGAATAATAAATATTTGTT 5550
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5551 GAATGAGCAAAGACGGAGGGGGCAGTCGCAGGAAGGGGGCCTACCGCGTGGCTAAGGGCCCTGAGGTATGAAAG 5624
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5625 ATCTGAGATGCTGGTGGACGTGGCTGCTTCCCGAGCTGAACTGGGGAAGTGGTGGGGAGGTGGGAGATGTCGGG 5698
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5699 GAGCTGATGCTGGGGCAGTTTATACTTTATTCTGCAAATGAAGAATTATTGATGGGTTTCATGTAGAGTCATGA 5772
Query 1 ------------------------------------------------------ATGGAGTCTCACTCTGTCAC 20
|..|||||||||||||||.|
Sbjct 5773 TCATATTTCTTGATTGCGTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGAGTCTCACTCTGTCGC 5846
Query 21 CCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACC 94
|.|||||||||||||||||.|.||||||||||||||||||||||.|||||||||.||||
Sbjct 5847 CGAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCCGCCTCCTGGATTCA--------------- 5905
Query 95 TCAGCCTCCCAAGTAGCTGGGATTACAGACGTG--TGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAG 166
|||.||||.||||||||||||||||| ||| |||||||||.||.||.|||||||||.|||||||||.|||
Sbjct 5906 --AGCTTCCCGAGTAGCTGGGATTACAG--GTGCATGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAG 5975
Query 167 AGGGAGTTTCACCATGTTGGCCAGGTTGGTCT------------------------------------------ 198
|.||||||||||||||||.|.||||.||||||
Sbjct 5976 ACGGAGTTTCACCATGTTAGTCAGGCTGGTCTCAAACTCCTGACCTCGTGATCCACCCACCTCAACCTCCCAAA 6049
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6050 GTGCTGGGATTACAAGCGTGAGCCACTGCGCCTGGCCTCCTGATTGCTTTTTAAGTAATTTTTTAAAAATAATT 6123
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6124 TTTCTCTTTATTATTAAATGTTAGAAATATATGGAAACGTGGGCAAAAAGTAAAAATCACTCAAATCTCATTCC 6197
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6198 TAGAGTTAGTCACTATTAATATTTTGGTGTATGTGTATTTCTTCCTTCAACATTCAGATTATATACTTTTTTGA 6271
Query 199 ---------------------------------------------------------- 198
Sbjct 6272 AACTGGCTTTTTTCTCTTAATGTGAATTTCTCCATGTCATTAAATATTCTCCTAAAAA 6329
