Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_001750375.2
- Aligned Length:
- 6450
- Identities:
- 172
- Gaps:
- 6252
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTAAGAGAGGAGGAAAGAAAGAGGAAAAGAGTGCGAGGGAGTGAGGGAGGGAGGAAAATAAACAACAAAAAATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCTCTTCCTCCCCCACCGGGCAGATCGCAAGTGCGGCGGACATCAAGCAAGAGAATGGGATGGAAAGCGCCTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAAGGGCAGGAGGCGCACCGAGAAGTGGCGGGGGGCGCGGCGGTAGGGCTGAGCCCCCCGGCTCCAGCCCCTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTCCCCTGGAGCCGGGGGACGCCGCGACCGCTGCCGCCAGGGTGAGCGGAGAGGAAGGGGCAGTGGCGGCGGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCGGCCGGAGCGGCGGCGGATCAGGTACAACTCCACTCGGAACTTCTGGGCAGGCACCACCACGCCGCCGCCGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGCCGCGCAGACCCCGCTGGCCTTCTCGCCCGACCACGTCGCCTGCGTGTGCGAGGCACTGCAGCAGGGGGGCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCTGGACCGCCTGGCCCGGTTCCTGTGGTCCCTGCCCCAGAGCGACCTGCTACGTGGCAACGAGAGCCTGCTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAGGCGCGGGCGCTCGTGGCCTTCCACCAGGGCATCTACCCCGAGCTCTACAGCATCCTCGAGAGCCACAGCTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CGAGTCGGCCAACCACCCGCTGCTGCAGCAGCTCTGGTACAAGGCGCGCTACACCGAGGCCGAGCGAGCCCGCG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCCGGCCGCTGGGAGCCGTAGACAAGTACCGGCTGCGCAGGAAATTCCCCCTGCCCCGCACCATCTGGGACGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGGAGACGGTGTATTGTTTCAAGGAGAAGTCGCGCAACGCGCTCAAGGAGCTCTACAAGCAGAATCGCTACCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCGCCCGCCGAGAAGCGGCACCTGGCCAAGATCACCGGCCTCTCCCTCACCCAGGTCAGCAACTGGTTCAAGA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACCGCCGGCAGCGCGACAGGAACCCCTCCGAGACCCAGTCCAAAAGGGCACTGGATGGTGTTTGTTAAATAGGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCCTTTGGCTTCCTTTGGATTCAAAGGCGACTGCACATAACTGTTCTTGGGTTGAAAGTGCCTTTTCCTACAAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAGGACAGCCACTTTGTTGAATGAGAGAGTTGTCAGTCTGGTGGAGTAGAAGTTTGGGAGCAGTGAGTCAGATG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCAACCCCAGCACTGAAGATGAATCCAGCAAGGGACATGAGGATTTATCTCCTCACCCACTCTCCAGTTCATCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GATGGCATCACCAACCTCAGCCTTTCCAGTCATATGGAGCCAGTATATATGCAACAAATTGGAAATGCTAAGAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATCATTAAGCTCTTCTGGAGTTCTGTTGAATGGAAGCTTGGTACCTGCAAGTACTTCACCTGTCTTCCTTAATG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GAAATTCTTTTATTCAGGGACCCAGTGGAGTTATCCTTAATGGATTAAATGTGGGAAATACACAGGCAGTGGCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTGAACCCACCAAAAATGTCATCAAACATTGTGAGCAATGGTATATCCATGACTGACATACTGGGGTCTACTTC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCAGGACGTGAAGGAATTCAAAGTCCTCCAGAGTTCTGCTAACTCAGCAACCACCACGTCCTACAGCCCCAGTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCCCTGTCTCATTCCCAGGCCTGATACCCAGCACTGAGGTGAAAAGAGAAGGCATTCAAACAGTGGCTTCCCAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GATGGAGGGTCTGTAGTGACTTTTACTACACCAGTGCAAATTAACCAGTATGGCATTGTCCAGATCCCCAATTC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CGGAGCAAACAGCCAGTTCCTTAATGGGAGCATTGGATTCTCTCCACTGCAGCTGCCCCCTGTGTCAGTGGCAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTTCACAAGGTAATATCTCAGTAAGCTCAAGCACTTCAGATGGAAGCACATTTACAAGTGAGTCTACCACAGTC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CAGCAAGGAAAGGTTTTCTTGAGCTCTCTTGCTCCCAGTGCAGTGGTATACACGGTTCCTAATACAGGCCAGAC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TATAGGATCTGTGAAACAGGAAGGCTTGGAAAGGAGCCTGGTATTTTCTCAGTTGATGCCTGTCAATCAGAATG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CACAAGTAAATGCAAACCTGTCTTCTGAAAACATCTCGGGGAGTGGCCTGCATCCACTGGCCTCCTCATTAGTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AATGTATCTCCAACTCACAATTTTTCTCTCAGTCCCTCTACACTACTAAATCCCACTGAGCTAAACCGCGACAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGCCGATAGCCAACCAATGTCTGCACCGGTGGCAAGCAAATCTACTGTGACATCTGTCAGCAACACTAACTATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAACTCTTCAGAACTGCTCCCTTATTACTGGTCAAGACCTATTGTCAGTCCCTATGACTCAGGCTGCCCTTGGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GAAATAGTTCCTACAGCTGAAGATCAGGTAGGTCACCCCTCCCCAGCAGTACATCAGGATTTTGTCCAAGAACA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCGTTTGGTTCTGCAATCGGTAGCTAACATGAAAGAGAATTTCTTATCAAATTCTGAGAGCAAAGCAACAAGTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCTTAATGATGCTGGACTCTAAATCCAAGTATGTCTTAGATGGCATGGTTGATACTGTCTGTGAAGACCTGGAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACAGACAAAAAAGAGCTTGCCAAGCTCCAGACTGTCCAGCTGGATGAAGATATGCAAGACTTATGAACTTTATT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCCTCCTCACCTCTTTTTGGCATCAGCGGCAAATCTTTTCATGAAGCCCCAAGGACACAAAACATTTTCCCATT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TAAAGGAAAACACTCTAGTTTTGCAAGTATATGCATACAAGAGACTTTAGATTGATCTGCATGAAGATCACAGT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TAAGTATACAGGAGTAGAACTGCATTATTGCAGCCTTTTTGTTCACTTATAAATTTCTCTTTTAAATAGATGGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GACAAAGGACAAGGTGAAATGTATCAAGTCAAAGTGAATCATTTAGTTGACTCTATAATTCTAAGGTCAAAATG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GAACTTGATAGTTTTTTAAATTAAAAAATGTATACACCTAACATAGAAAATTAAAGATAGCTGCAGACCATTAG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAATAATACAATTGTTTTTGTTTACTTTTACTCCATGGGCATTGAAAAGGTTAAGAAACATAAATGGTACATAT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTTTAAAGTTAAGTAGCATGCATATATATATGCACACACACCTCTTTTTCAGCATTTTTTGAGAAAGTCTTGGG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCTCAAACACATTTGTCTCAACACATTTCCAAATGTGATTTCTAATAGCTCAGTGTGGCTGAGAAAGTGCGGAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTCCACTAAAAACTCTGAAACTTCAGTATAAATGTAAATATATCAGTTCTATAAGCAGGATTTGAGTAATTACA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GTGAATTTTATTTTTAATGTATATGTTTCTCTTCAGGCGCTATGAACTGAAAAATATGTTTTCTTACTGTTTAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTATTTTTATTGTTTGAACAGGAAGTGAACATAGTCGTTTCCAACAAAGTTTTACTTTTTGTAGGATTTTAAA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AATAATGATTTTTACCAGGAATCTATTAAGGTCAATATTAATAACACTGAAACAGGAAATCTAACTCCCAATAT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TGGAATTTTGGTACTTTTTTTCACATCCTTGTTCTTTATTTAGCAACTCTGATTCATTTAAATATGTTTTTTAT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AGAATTCTATGTGCCTTTTTACCTCGTGGCCTTTTTATTGGTAGTAAGGTACAGAAGTGTCAACAGAAGCACTG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ATGGTTCTTTTCTACTATCTAACAGGGTTAATTTCACCACAAAATTGCTTTAAATCTGAAGAACTTAAGTTTCA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CTAAATAATATATATGACATTTATCACACAAATGGATAAACAACTAATTATTGTTGATACTTTTCATTACAAGG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AAAATAAGTTATAAATACCATGTCAAATTGATTATACAGGCTATGAAAACCATTTTAAAGGAAAGAAAATATGT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AAATTCTATTGAGCAAAATTCTGTCCTGTTGAAACTTAGTTCTAAAGGTTTTGAATCAGTTGTTACACTCTGAC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 ACATGACTGTTGTTTGCACTATATTATCATGTCTTCTTTAAAAGTAAATATTTTTGGTTTCTGTAAGAAGCTTG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TTTAATAATGTTGTAAGCCGTGGCTATAGTTTTATCAAGACTCTGAACACAAGATGTAACAATGCAAATAAATT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TATGTAGTGAGTAAAGTTGCTCTCTAGTCTCTGAAAAGCAAAAAAAGTGAGAAAATAATTTCTTCAGAGATAAC 4144
Query 1 ---------------------------------------------------------------ATGGAGTCTCA 11
||||||||||.
Sbjct 4145 TTCAAGTTGTTGAACATAAAGGTGTTAGATGTTAGCACATCTTGCTTTTTTTTTTTTTTTGAGATGGAGTCTCG 4218
Query 12 CTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAAT 85
||||||..|||||||||||||||||||||..||||||||||||||||||.||||||||||||||||||.||.||
Sbjct 4219 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAAGCTCTGCCTCCTGGGTTCACGCCAT 4292
Query 86 TCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGT-AATTTTTGCATTTT 158
|||||..||||||||||||.|||||||||||.|||||.|...|||||||||.||.||.| ||||||||.|||||
Sbjct 4293 TCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCTGCCACCATGCCCGGCTAAATTTTTGTATTTT 4366
Query 159 TAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT---------------------------------- 198
||||.||||.||.||||||||.||||.||||||.||||||
Sbjct 4367 TAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCTGCCCGCCTCGGC 4440
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4441 CTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGTGCCTGGCCACATCTTGCTTTTTTTTTTATGATCAGAA 4514
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4515 CAAAGGGCCCACTCTAGTTCTCTACATGTCAATCAATCAAGCATGTTGAATAAGGGACATAGAGGATTTAACTT 4588
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4589 TTGTTATCATAAATGGAACTTGCAGGCATATATCAAGAACCCTATGAAGAATTCCTCTCCCATCATTTTGATAA 4662
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4663 AGAACTACATCATTTTTGATAGAATTGGTGAATGTTCCTAAACTGCTGAAGCTACATGTTTTTTGTTTTGTTTT 4736
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4737 ACAAAGTCAGGTGTTTGAGAGTTCTTTTCCACTCTACTACTACTCATAGAGCTTGTTTTTTCTTTGGGTGTGTG 4810
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4811 CTGATCCTGTTACTGAGATTAATTACATGGCTCTGCAGTGTAGTTTACATAAAAATGATGTTTTCCACTTGATT 4884
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4885 GCTGCAGATATCAAGAGTTTGTTATTTTCAAATACCCATCCAACAAGAGAGATGGGGAGGTTTTTAGTTATATA 4958
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4959 TGCTATATATATATATATAACTGGAAATGTTTTATATGTTTTCCGAAAATACAATAAGCCTCTCTTTTATTCAG 5032
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5033 TGTTCTTCCTCTTTTCTCCCTTATGAAAAAGAAAAGATAGCACAAAACTTAAGACTTACCTAGGAAACCCATTC 5106
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5107 ATATTCCCACCATGATGTAATTATAACCCTACAATTACTTCAGGTAGCTACACAATATACCAGGTAAGAATCAA 5180
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5181 TGCACAGTATAAAGAACTTATTGTTCTTTTCTATTCTTTCAGTTGAATAAGGGCCAGTTGGTATGCAGCCCATG 5254
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5255 TATATGTGAATGGAGTAAGATAAACCCCATGATCTCCTTGCACAGAATTGCAAATGTCTTTTGCCATACCAAGG 5328
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5329 GCCAGACTCAGAACCCTTGGAGTCATGTGGCAGAATTTCCCTCTTACATAAACCAATGCTTGAAAATGCTGCAA 5402
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5403 ATGACCCTCTAATGATCCCTGAAGATCAAAACAGGGGTAAATGACTCCCTGCAAAACCCAACCCATGCTGCTGG 5476
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5477 CTGTGGGATTTTTGGTGTAAGCCTATCTATGCACTCTATCAGCCAGAATTTGGCATTTAGCTCTTAGTTAAATC 5550
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5551 TAGTAAAGGACAGTCTATTGTTTAAAGAGAAGGTGCATTTGTTCCTCAATCAAGCAAGAGCACCTGTGTTGTAC 5624
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5625 TGCTTTATATCTCATGTATATTTATAGTAATGAAAAGACTTTTTAAATTGTACACGTTTCAGTGCCTTTCTTGT 5698
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5699 GTTATGAAAGGCAGGTAGATATTATAGCCATAGGTAAAAATCCATAGTTAAATTGCACACTGACCTTAAATCTC 5772
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5773 TCTGTGTATGCCCTTGTATCTTGCATGTTAAAAGTTGGATTATTGGGCATGTGTGGCAGCCTGCCCTGCTACAT 5846
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5847 GCTAGACAAGTGTGCTTTAGTACATAGCCACAAGTTCTTCATTCTTTAAAATGTTTTGACAGATCATCTCATAA 5920
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5921 TAAAAATAATTCAGGAAAACTATGGGGAAATAGTTACATTTCACAAAAGATATTTTAAACTCTTTGTAAAACTT 5994
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5995 AGATAATAGAGCCTAGCAGTTACTTTGTATCTAATTGATACATTTTATGTTAATTTACCACCATACATTTTATT 6068
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6069 AATCAAAATTGTATAGCATGTGACTCTTTTGGCTTTCAGAGTTCTCAAAAATATTATTTTGTTGCATGTACTGT 6142
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6143 ATGTTTAGAGGCAACCAATTATATACTCAATATGGTTTTACTGTGCCTTACACAAAGAGAAACTCTATACAGAA 6216
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6217 TGTATATCATGGGGTGGGGTAACAGAGTCTTTACTGCACTGTTAGGTGATGGCACACAGAGCATGTCCCAGAAC 6290
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6291 ATTTCTGTGCTTAATTACCCAACCAAAGAGATCTGAAGTATGTATGTCGTACTGTAATGGGGGTTTATGCCTGG 6364
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6365 ACAATTAAGTGTTTTATTTGTTTTCTGAAATGATGTGAACTTATTTTTCTAAACACTATGCTAAATAAACTTTA 6438
Query 199 ------------ 198
Sbjct 6439 TATTTATACATA 6450
