Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- XR_247045.3
- Aligned Length:
- 4212
- Identities:
- 173
- Gaps:
- 4014
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCCAGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTGAGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTGTGAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGGGCTACGGCCACTGTGTGGTGGGAAGAGGCCGATACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTGATAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATATACTTTCACAAGATTTACTGGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGACACTGGAATTCCAGAAGTGACCACCTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCAGAAAAGGAAGATGTTGCTGGGCACCCAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTCACTTCTTACAGAACAAGACTTATGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGCCTTTATTGGCAAAGTTCAGACTTGAGCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTAAGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCATATCA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTCTCTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAATTGACAGTGATTTTTAAATATAATGCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTATCTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGAGTTC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAACCAGCCATTGTTTAGTTTGTTTTTGAAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTTATTACTGTCCTGAGCCATGTAATATGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTGTAAAGCTCACTCTTTCACCCTGGAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTGTTTCCCTAGCATTTTTATTTATTTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCAATCT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCTGGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCACTGC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAACCAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGTTAAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTAAATA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATGAGAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAATTTT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAAGGAATTATATGCATTTTTACTAAGTAG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAATAGAATGCTTCACCTTAAATTGGAAAAC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTATTTTTAAAAAAACAAACAGATGAAA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTAATTGAATATGTTTAAATATTTAATT 3330
Query 1 -------------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGT 37
||||.|||||||.||.||.||||||||||||||||||
Sbjct 3331 TCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCACGCTATCGCCCAGGCTGGAGTGCAGT 3404
Query 38 GGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGC 111
||||.||.||.||||||||||||||||.|||||||||||||||||||||||||..|||||||||||||||||||
Sbjct 3405 GGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGC 3478
Query 112 TGGGATTACAGACGTGTGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTG 185
|||||||||||.|.||..|||||||.||..|.|||||||||.|||||||||.||||.|||.|||..||||||||
Sbjct 3479 TGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCATGTTG 3552
Query 186 GCCAGGTTGGTCT------------------------------------------------------------- 198
||||||.||||||
Sbjct 3553 GCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTACAG 3626
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3627 GCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTAATTATAGTTCTAGGATTTCCCACAT 3700
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3701 TTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATATAGACATTATCAAATTATAATGATAGT 3774
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3775 ATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGTGTGA 3848
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3849 ATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAACAAACATCCCTGAAAACCTCTGTGAAAA 3922
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3923 TTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAGAGTT 3996
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3997 AATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGTCAA 4070
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4071 TGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCCACTTGTCTTTACTTTTGTTGACCAGAA 4144
Query 199 -------------------------------------------------------------------- 198
Sbjct 4145 TAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTAAATCTGGTTAATGCCTGAAA 4212
