Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11662
Subject:
NM_001161576.2
Aligned Length:
1897
Identities:
728
Gaps:
1163

Alignment

Query    1  ATGATGTTTCGCGACCAGGTCGGGGTGCTGGCGGGCTGGTTTAAGGGCTGGAACGAGTGCGAGCAGACTGTTGC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGATGTTTCGCGACCAGGTCGGGGTGCTGGCGGGCTGGTTTAAGGGCTGGAACGAGTGCGAGCAGACTGTTGC  74

Query   75  GCTGCTGTCGCTGCTCAAGCGCGTGAGCCAGACCCAGGCCCGCTTCCTCCAGCTCTGCCTGGAGCACTCGCTGG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GCTGCTGTCGCTGCTCAAGCGCGTGAGCCAGACCCAGGCCCGCTTCCTCCAGCTCTGCCTGGAGCACTCGCTGG  148

Query  149  CCGACTGCGCCGAGCTGCACGTCCTCGAACGCGAGGCCAACAGCCCCGGAATCATTAACCAATGGCAACAGGAA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CCGACTGCGCCGAGCTGCACGTCCTCGAACGCGAGGCCAACAGCCCCGGAATCATTAACCAATGGCAACAGGAA  222

Query  223  TCCAAGGATAAAGTGATTTCCCTCCTGTTAACTCATCTGCCTTTGCTGAAGCCAGGAAACCTCGACGCGAAAGT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TCCAAGGATAAAGTGATTTCCCTCCTGTTAACTCATCTGCCTTTGCTGAAGCCAGGAAACCTCGACGCGAAAGT  296

Query  297  AGAATATATGAAACTGCTGCCCAAAACCCTGGCTCACTCTATTGAACACAACCAGCACATTGAGGAGAGCAGGC  370
            ||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGAATATATGAAACTGCTGCCCAAAATCCTGGCTCACTCTATTGAACACAACCAGCACATTGAGGAGAGCAGGC  370

Query  371  AGCTGCTGTCCTATGCTTTGATACATCCAGCCACTTCGTTAGAAGACCGTAGTGCTTTAGCCATGTGGCTGAAT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGCTGCTGTCCTATGCTTTGATACATCCAGCCACTTCGTTAGAAGACCGTAGTGCTTTAGCCATGTGGCTGAAT  444

Query  445  CACTTGGAGGACCGCACGTCGACCAGCTTTGGTGGCCAGAACCGAGGCCGCTCAGACTCTGTGGATTATGGACA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CACTTGGAGGACCGCACGTCGACCAGCTTTGGTGGCCAGAACCGAGGCCGCTCAGACTCTGTGGATTATGGACA  518

Query  519  GACACACTACTATCACCAAAGACAGAACTCTGATGACAAGCTCAATGGGTGGCAGAACTCTCGGGATTCTGGGA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GACACACTACTATCACCAAAGACAGAACTCTGATGACAAGCTCAATGGGTGGCAGAACTCTCGGGATTCTGGGA  592

Query  593  TTTGCATCAATGCCTCCAACTGGCAGGACAAAAGCATGGGGTGTGAGAATGGCCATGTGCCCCTCTACTCCTCC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TTTGCATCAATGCCTCCAACTGGCAGGACAAAAGCATGGGGTGTGAGAATGGCCATGTGCCCCTCTACTCCTCC  666

Query  667  TCATCTGTCCCCACCACAATCAATACGATTGGAACCAGCACAAGTACAAGTAAGTTCCCCGGAATCC---CTTT  737
            |||||||||||||||||||||||||||||||||||||||||||||||||  |.|||||     |.||   ||..
Sbjct  667  TCATCTGTCCCCACCACAATCAATACGATTGGAACCAGCACAAGTACAA--ATGTTCC-----AGCCTGGCTGA  733

Query  738  AACG----------------------------------------------------------------------  741
            ||.|                                                                      
Sbjct  734  AAAGCCTCCGCCTGCACAAATATGCCGCGCTTTTCTCCCAGATGACCTATGAGGAGATGATGGCCCTCACCGAG  807

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct  808  TGCCAGCTGGAGGCGCAGAATGTTACCAAAGGTGCAAGACACAAAATTGTCATCAGTATTCAGAAGCTCAAAGA  881

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct  882  AAGACAAAATCTCCTGAAGTCTTTGGAAAGGGACATCATCGAGGGGGGCAGCCTGCGCATCCCGCTCCAGGAAC  955

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct  956  TGCACCAGATGATCCTGACTCCGATCAAGGCCTACAGCTCCCCGAGCACCACCCCCGAGGCTCGCCGCCGGGAG  1029

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct 1030  CCCCAGGCCCCGCGTCAGCCCTCACTGATGGGCCCCGAGAGCCAGAGCCCCGACTGCAAAGATGGGGCCGCAGC  1103

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct 1104  CACTGGCGCCACGGCCACCCCCTCGGCCGGGGCCAGCGGGGGGCTCCAGCCGCACCAGCTGAGCAGCTGCGATG  1177

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct 1178  GGGAGCTGGCCGTCGCCCCCCTGCCAGAGGGGGACCTCCCCGGGCAGTTCACACGCGTCATGGGGAAAGTGTGC  1251

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct 1252  ACACAGCTCTTGGTCTCCAGACCTGATGAGGAAAATATAAGTTCCTATTTACAGCTCATAGACAAGTGTCTAAT  1325

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct 1326  TCATGAGGCATTTACAGAGACACAGAAAAAAAGATTGTTGTCATGGAAACAGCAGGTGCAGAAGCTCTTTCGGT  1399

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct 1400  CTTTCCCTCGGAAAACCCTTCTAGACATATCAGGATATCGACAGCAAAGAAATCGAGGCTTTGGGCAATCCAAC  1473

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct 1474  TCCCTCCCGACGGCTGGCTCTGTGGGCGGTGGCATGGGCAGACGGAACCCGCGCCAGTACCAGATCCCCTCTCG  1547

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct 1548  GAACGTCCCTTCCGCCCGCCTGGGCCTCTTGGGCACCAGTGGATTCGTCAGCTCCAACCAGCGCAACACCACAG  1621

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct 1622  CTACCCCCACCATCATGAAACAAGGAAGACAGAACCTGTGGTTTGCCAACCCCGGGGGCAGCAATAGCATGCCA  1695

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct 1696  AGCCGCACCCACAGCTCAGTCCAGAGGACCCGCTCGCTGCCCGTGCACACTTCCCCACAGAACATGCTGATGTT  1769

Query  742  --------------------------------------------------------------------------  741
                                                                                      
Sbjct 1770  CCAGCAGCCAGAATTCCAGCTTCCCGTGACCGAACCTGACATCAACAACAGGCTGGAGTCGTTGTGCCTCAGTA  1843

Query  742  -----------------------------------------------  741
                                                           
Sbjct 1844  TGACCGAACACGCCCTGGGAGACGGGGTTGACCGGACCTCCACCATC  1890

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