Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11696
- Subject:
- NR_156414.2
- Aligned Length:
- 5511
- Identities:
- 1762
- Gaps:
- 3733
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCAGACCGTCGCTAATGAATCTTGGGGCCGGTGTCGGGCCGGGGCGGCTTGATCGGCAACTAGGAAACCCCAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCAGAGGCCAGGAGCGAGGGCAGCGAGGATCAGAGGCCAGGCCTTCCCGGCTGCCGGCGCTCCTCGGAGGTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGGCAGATGAGGAACATGACTCTCCCCCTTCGGAGGAGGAAGGAAGTCCCGCTGCCACCTTATCTCTGCTCCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCCTCCTCCCTGTTCCCAGAGCTTTTTCTCTAGAGAAGATTTTGAAGGCGGCTTTTGTGCTGACGGCCACCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCATCATCTAAAGAAGATAAACTTGGCAAATGACATGCAGGTTCTTCAAGGCAGAATAATTGCAGAAAATCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAAGGACCCTATCTGCAGATGTTCTGAATACCTCTGAGAATAGAGATTGATTATTCAACCAGGATACCTAATTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAGAACTCCAGAAATCAGGAGACGGAGACATTTTGTCAGTTTTGCAACATTGGACCAAATACAATGAAGTATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTGCTGTGCTCTGGTTTTGGCTGTCCTGGGCACAGAATTGCTGGGAAGCCTCTGTTCGACTGTCAGATCCCCGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGTTCAGAGGACGGATACAGCAGGAACGAAAAAACATCCGACCCAACATTATTCTTGTGCTTACCGATGATCAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GATGTGGAGCTGGGGTCCCTGCAAGTCATGAACAAAACGAGAAAGATTATGGAACATGGGGGGGCCACCTTCAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAATGCCTTTGTGACTACACCCATGTGCTGCCCGTCACGGTCCTCCATGCTCACCGGGAAGTATGTGCACAATC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACAATGTCTACACCAACAACGAGAACTGCTCTTCCCCCTCGTGGCAGGCCATGCATGAGCCTCGGACTTTTGCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTATATCTTAACAACACTGGCTACAGAACAGCCTTTTTTGGAAAATACCTCAATGAATATAATGGCAGCTACAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCCCCCTGGGTGGCGAGAATGGCTTGGATTAATCAAGAATTCTCGCTTCTATAATTACACTGTTTGTCGCAATG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCATCAAAGAAAAGCATGGATTTGATTATGCAAAGGACTACTTCACAGACTTAATCACTAACGAGAGCATTAAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TACTTCAAAATGTCTAAGAGAATGTATCCCCATAGGCCCGTTATGATGGTGATCAGCCACGCTGCGCCCCACGG 1184
Query 1 -----------------------------------------ATGTGCT---------ATGGAACTCCTAGTTAT 24
| |||| || |||||||||||||
Sbjct 1185 CCCCGAGGACTCAGCCCCACAGTTTTCTAAACTGTACCCCAA--TGCTTCCCAACACAT--AACTCCTAGTTAT 1254
Query 25 AACTATGCACCAAATATGGATAAACACTGGATTATGCAGTACACAGGACCAATGCTGCCCATCCACATGGAATT 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AACTATGCACCAAATATGGATAAACACTGGATTATGCAGTACACAGGACCAATGCTGCCCATCCACATGGAATT 1328
Query 99 TACAAACATTCTACAGCGCAAAAGGCTCCAGACTTTGATGTCAGTGGATGATTCTGTGGAGAGGCTGTATAACA 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TACAAACATTCTACAGCGCAAAAGGCTCCAGACTTTGATGTCAGTGGATGATTCTGTGGAGAGGCTGTATAACA 1402
Query 173 TGCTCGTGGAGACGGGGGAGCTGGAGAATACTTACATCATTTACACCGCCGACCATGGTTACCATATTGGGCAG 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 TGCTCGTGGAGACGGGGGAGCTGGAGAATACTTACATCATTTACACCGCCGACCATGGTTACCATATTGGGCAG 1476
Query 247 TTTGGACTGGTCAAGGGGAAATCCATGCCATATGACTTTGATATTCGTGTGCCTTTTTTTATTCGTGGTCCAAG 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TTTGGACTGGTCAAGGGGAAATCCATGCCATATGACTTTGATATTCGTGTGCCTTTTTTTATTCGTGGTCCAAG 1550
Query 321 TGTAGAACCAGGATCAATAGTCCCACAGATCGTTCTCAACATTGACTTGGCCCCCACGATCCTGGATATTGCTG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 TGTAGAACCAGGATCAATAGTCCCACAGATCGTTCTCAACATTGACTTGGCCCCCACGATCCTGGATATTGCTG 1624
Query 395 GGCTCGACACACCTCCTGATGTGGACGGCAAGTCTGTCCTCAAACTTCTGGACCCAGAAAAGCCAGGTAACAGG 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 GGCTCGACACACCTCCTGATGTGGACGGCAAGTCTGTCCTCAAACTTCTGGACCCAGAAAAGCCAGGTAACAGG 1698
Query 469 TTTCGAACAAACAAGAAGGCCAAAATTTGGCGTGATACATTCCTAGTGGAAAGAGGCAAATTTCTACGTAAGAA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 TTTCGAACAAACAAGAAGGCCAAAATTTGGCGTGATACATTCCTAGTGGAAAGAGGCAAATTTCTACGTAAGAA 1772
Query 543 GGAAGAATCCAGCAAGAATATCCAACAGTCAAATCACTTGCCCAAATATGAACGGGTCAAAGAACTATGCCAGC 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 GGAAGAATCCAGCAAGAATATCCAACAGTCAAATCACTTGCCCAAATATGAACGGGTCAAAGAACTATGCCAGC 1846
Query 617 AGGCCAGGTACCAGACAGCCTGTGAACAACCGGGGCAGAAGTGGCAATGCATTGAGGATACATCTGGCAAGCTT 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 AGGCCAGGTACCAGACAGCCTGTGAACAACCGGGGCAGAAGTGGCAATGCATTGAGGATACATCTGGCAAGCTT 1920
Query 691 CGAATTCACAAGTGTAAAGGACCCAGTGACCTGCTCACAGTCCGGCAGAGCACGCGGAACCTCTACGCTCGCGG 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 CGAATTCACAAGTGTAAAGGACCCAGTGACCTGCTCACAGTCCGGCAGAGCACGCGGAACCTCTACGCTCGCGG 1994
Query 765 CTTCCATGACAAAGACAAAGAGTGCAGTTGTAGGGAGTCTGGTTACCGTGCCAGCAGAAGCCAAAGAAAGAGTC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995 CTTCCATGACAAAGACAAAGAGTGCAGTTGTAGGGAGTCTGGTTACCGTGCCAGCAGAAGCCAAAGAAAGAGTC 2068
Query 839 AACGGCAATTCTTGAGAAACCAGGGGACTCCAAAGTACAAGCCCAGATTTGTCCATACTCGGCAGACACGTTCC 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 AACGGCAATTCTTGAGAAACCAGGGGACTCCAAAGTACAAGCCCAGATTTGTCCATACTCGGCAGACACGTTCC 2142
Query 913 TTGCCCGTCGAATTTGAAGGTGAAATATATGACATAAATCTGGAAGAAGAAGAAGAATTGCAAGTGTTGCAACC 986
|||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 TTGTCCGTCGAATTTGAAGGTGAAATATATGACATAAATCTGGAAGAAGAAGAAGAATTGCAAGTGTTGCAACC 2216
Query 987 AAGAAACATTGCTAAGCGTCATGATGAAGGCCACAAGGGGCCAAGAGATCTCCAGGCTTCCAGTGGTGGCAACA 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 AAGAAACATTGCTAAGCGTCATGATGAAGGCCACAAGGGGCCAAGAGATCTCCAGGCTTCCAGTGGTGGCAACA 2290
Query 1061 GGGGCAGGATGCTGGCAGATAGCAGCAACGCCGTGGGCCCACCTACCACTGTCCGAGTGACACACAAGTGTTTT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2291 GGGGCAGGATGCTGGCAGATAGCAGCAACGCCGTGGGCCCACCTACCACTGTCCGAGTGACACACAAGTGTTTT 2364
Query 1135 ATTCTTCCCAATGACTCTATCCATTGTGAGAGAGAACTGTACCAATCGGCCAGAGCGTGGAAGGACCATAAGGC 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2365 ATTCTTCCCAATGACTCTATCCATTGTGAGAGAGAACTGTACCAATCGGCCAGAGCGTGGAAGGACCATAAGGC 2438
Query 1209 ATACATTGACAAAGAGATTGAAGCTCTGCAAGATAAAATTAAGAATTTAAGAGAAGTGAGAGGACATCTGAAGA 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439 ATACATTGACAAAGAGATTGAAGCTCTGCAAGATAAAATTAAGAATTTAAGAGAAGTGAGAGGACATCTGAAGA 2512
Query 1283 GAAGGAAGCCTGAGGAATGTAGCTGCAGTAAACAAAGCTATTACAATAAAGAGAAAGGTGTAAAAAAGCAAGAG 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2513 GAAGGAAGCCTGAGGAATGTAGCTGCAGTAAACAAAGCTATTACAATAAAGAGAAAGGTGTAAAAAAGCAAGAG 2586
Query 1357 AAATTAAAGAGCCATCTTCACCCATTCAAGGAGGCTGCTCAGGAAGTAGATAGCAAACTGCAACTTTTCAAGGA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2587 AAATTAAAGAGCCATCTTCACCCATTCAAGGAGGCTGCTCAGGAAGTAGATAGCAAACTGCAACTTTTCAAGGA 2660
Query 1431 GAACAACCGTAGGAGGAAGAAGGAGAGGAAGGAGAAGAGACGGCAGAGGAAGGGGGAAGAGTGCAGCCTGCCTG 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2661 GAACAACCGTAGGAGGAAGAAGGAGAGGAAGGAGAAGAGACGGCAGAGGAAGGGGGAAGAGTGCAGCCTGCCTG 2734
Query 1505 GCCTCACTTGCTTCACGCATGACAACAACCACTGGCAGACAGCCCCGTTCTGGAACCTGGGATCTTTCTGTGCT 1578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2735 GCCTCACTTGCTTCACGCATGACAACAACCACTGGCAGACAGCCCCGTTCTGGAACC----------------- 2791
Query 1579 TGCACGAGTTCTAACAATAACACCTACTGGTGTTTGCGTACAGTTAATGAGACGCATAATTTTCTTTTCTGTGA 1652
Sbjct 2792 -------------------------------------------------------------------------- 2791
Query 1653 GTTTGCTACTGGCTTTTTGGAGTATTTTGATATGAATACAGATCCTTATCAGCTCACAAATACAGTGCACACGG 1726
||||||||||||||||||||||
Sbjct 2792 ----------------------------------------------------CTCACAAATACAGTGCACACGG 2813
Query 1727 TAGAACGAGGCATTTTGAATCAGCTACACGTACAACTAATGGAGCTCAGAAGCTGTCAAGGATATAAGCAGTGC 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2814 TAGAACGAGGCATTTTGAATCAGCTACACGTACAACTAATGGAGCTCAGAAGCTGTCAAGGATATAAGCAGTGC 2887
Query 1801 AACCCAAGACCTAAGAATCTTGATGTTGGAAATAAAGATGGAGGAAGCTATGACCTACACAGA--------ATG 1866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2888 AACCCAAGACCTAAGAATCTTGATGTTGGAAATAAAGATGGAGGAAGCTATGACCTACACAGAGGACAGTTATG 2961
Query 1867 ---TTGCTGTTCCTGGTACCCTGTTCGGCCCC-TCTAAC-------------------------------CTCC 1905
|.|.|| ||.|...|..||.||||| |||.|| ||.|
Sbjct 2962 GGATGGATG-----GGAAGGTTAATCAGCCCCGTCTCACTGCAGACATCAACTGGCAAGGCCTAGAGGAGCTAC 3030
Query 1906 AGAG---------------CTATG-GT----------CT-CAGATGCTTCCTTT-------------------- 1932
|.|| ||||| || || |||| |||..|.|
Sbjct 3031 ACAGTGTGAATGAAAACATCTATGAGTACAGACAAAACTACAGA--CTTAGTCTGGTGGACTGGACTAATTACT 3102
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3103 TGAAGGATTTAGATAGAGTATTTGCACTGCTGAAGAGTCACTATGAGCAAAATAAAACAAATAAGACTCAAACT 3176
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3177 GCTCAAAGTGACGGGTTCTTGGTTGTCTCTGCTGAGCACGCTGTGTCAATGGAGATGGCCTCTGCTGACTCAGA 3250
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3251 TGAAGACCCAAGGCATAAGGTTGGGAAAACACCTCATTTGACCTTGCCAGCTGACCTTCAAACCCTGCATTTGA 3324
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3325 ACCGACCAACATTAAGTCCAGAGAGTAAACTTGAATGGAATAACGACATTCCAGAAGTTAATCATTTGAATTCT 3398
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3399 GAACACTGGAGAAAAACCGAAAAATGGACGGGGCATGAAGAGACTAATCATCTGGAAACCGATTTCAGTGGCGA 3472
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3473 TGGCATGACAGAGCTAGAGCTCGGGCCCAGCCCCAGGCTGCAGCCCATTCGCAGGCACCCGAAAGAACTTCCCC 3546
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3547 AGTATGGTGGTCCTGGAAAGGACATTTTTGAAGATCAACTATATCTTCCTGTGCATTCCGATGGAATTTCAGTT 3620
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3621 CATCAGATGTTCACCATGGCCACCGCAGAACACCGAAGTAATTCCAGCATAGCGGGGAAGATGTTGACCAAGGT 3694
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3695 GGAGAAGAATCACGAAAAGGAGAAGTCACAGCACCTAGAAGGCAGCGCCTCCTCTTCACTCTCCTCTGATTAGA 3768
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3769 TGAAACTGTTACCTTACCCTAAACACAGTATTTCTTTTTAACTTTTTTATTTGTAAACTAATAAAGGTAATCAC 3842
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3843 AGCCACCAACATTCCAAGCTACCCTGGGTACCTTTGTGCAGTAGAAGCTAGTGAGCATGTGAGCAAGCGGTGTG 3916
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3917 CACACGGAGACTCATCGTTATAATTTACTATCTGCCAAGAGTAGAAAGAAAGGCTGGGGATATTTGGGTTGGCT 3990
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3991 TGGTTTTGATTTTTTGCTTGTTTGTTTGTTTTGTACTAAAACAGTATTATCTTTTGAATATCGTAGGGACATAA 4064
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4065 GTATATACATGTTATCCAATCAAGATGGCTAGAATGGTGCCTTTCTGAGTGTCTAAAACTTGACACCCCTGGTA 4138
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4139 AATCTTTCAACACACTTCCACTGCCTGCGTAATGAAGTTTTGATTCATTTTTAACCACTGGAATTTTTCAATGC 4212
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4213 CGTCATTTTCAGTTAGATGATTTTGCACTTTGAGATTAAAATGCCATGTCTATTTGATTAGTCTTATTTTTTTA 4286
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4287 TTTTTACAGGCTTATCAGTCTCACTGTTGGCTGTCATTGTGACAAAGTCAAATAAACCCCCAAGGACGACACAC 4360
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4361 AGTATGGATCACATATTGTTTGACATTAAGCTTTTGCCAGAAAATGTTGCATGTGTTTTACCTCGACTTGCTAA 4434
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4435 AATCGATTAGCAGAAAGGCATGGCTAATAATGTTGGTGGTGAAAATAAATAAATAAGTAAACAAAATGAAGATT 4508
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4509 GCCTGCTCTCTCTGTGCCTAGCCTCAAAGCGTTCATCATACATCATACCTTTAAGATTGCTATATTTTGGGTTA 4582
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4583 TTTTCTTGACAGGAGAAAAAGATCTAAAGATCTTTTATTTTCATCTTTTTTGGTTTTCTTGGCATGACTAAGAA 4656
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4657 GCTTAAATGTTGATAAAATATGACTAGTTTTGAATTTACACCAAGAACTTCTCAATAAAAGAAAATCATGAATG 4730
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4731 CTCCACAATTTCAACATACCACAAGAGAAGTTAATTTCTTAACATTGTGTTCTATGATTATTTGTAAGACCTTC 4804
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4805 ACCAAGTTCTGATATCTTTTAAAGACATAGTTCAAAATTGCTTTTGAAAATCTGTATTCTTGAAAATATCCTTG 4878
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4879 TTGTGTATTAGGTTTTTAAATACCAGCTAAAGGATTACCTCACTGAGTCATCAGTACCCTCCTATTCAGCTCCC 4952
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4953 CAAGATGATGTGTTTTTGCTTACCCTAAGAGAGGTTTTCTTCTTATTTTTAGATAATTCAAGTGCTTAGATAAA 5026
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 5027 TTATGTTTTCTTTAAGTGTTTATGGTAAACTCTTTTAAAGAAAATTTAATATGTTATAGCTGAATCTTTTTGGT 5100
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 5101 AACTTTAAATCTTTATCATAGACTCTGTACATATGTTCAAATTAGCTGCTTGCCTGATGTGTGTATCATCGGTG 5174
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 5175 GGATGACAGAACAAACATATTTATGATCATGAATAATGTGCTTTGTAAAAAGATTTCAAGTTATTAGGAAGCAT 5248
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 5249 ACTCTGTTTTTTAATCATGTATAATATTCCATGATACTTTTATAGAACAATTCTGGCTTCAGGAAAGTCTAGAA 5322
Query 1933 ----------------------------------- 1932
Sbjct 5323 GCAATATTTCTTCAAATAAAAGGTGTTTAAACTTT 5357
