Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11696
- Subject:
- NR_156415.2
- Aligned Length:
- 5673
- Identities:
- 1762
- Gaps:
- 3895
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCAGACCGTCGCTAATGAATCTTGGGGCCGGTGTCGGGCCGGGGCGGCTTGATCGGCAACTAGGAAACCCCAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCAGAGGCCAGGAGCGAGGGCAGCGAGGATCAGAGGCCAGGCCTTCCCGGCTGCCGGCGCTCCTCGGAGGTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGGCAGATGAGGAACATGACTCTCCCCCTTCGGAGGAGGAAGGAAGTCCCGCTGCCACCTTATCTCTGCTCCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCCTCCTCCCTGTTCCCAGAGCTTTTTCTCTAGAGAAGATTTTGAAGGCGGCTTTTGGATTCTTCACTTCTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGAACAAGGAACTCACTCAGAGACTAACACAAAGGAAGTAATTTCTTACCTGGTCATTATTTAGTCTACAATAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTTCATCCTTCTTCAGTGTGACCAGTAAATTCTTCCCATACTCTTGAAGAGAGCATAATTGGAATGGAGAGGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTGACGGCCACCCACCATCATCTAAAGAAGATAAACTTGGCAAATGACATGCAGGTTCTTCAAGGCAGAATAAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGCAGAAAATCTTCAAAGGACCCTATCTGCAGATGTTCTGAATACCTCTGAGAATAGAGATTGATTATTCAACC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGGATACCTAATTCAAGAACTCCAGAAATCAGGAGACGGAGACATTTTGTCAGTTTTGCAACATTGGACCAAAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACAATGAAGTATTCTTGCTGTGCTCTGGTTTTGGCTGTCCTGGGCACAGAATTGCTGGGAAGCCTCTGTTCGAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGTCAGATCCCCGAGGTTCAGAGGACGGATACAGCAGGAACGAAAAAACATCCGACCCAACATTATTCTTGTGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTACCGATGATCAAGATGTGGAGCTGGGGTCCCTGCAAGTCATGAACAAAACGAGAAAGATTATGGAACATGGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGGGCCACCTTCATCAATGCCTTTGTGACTACACCCATGTGCTGCCCGTCACGGTCCTCCATGCTCACCGGGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GTATGTGCACAATCACAATGTCTACACCAACAACGAGAACTGCTCTTCCCCCTCGTGGCAGGCCATGCATGAGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTCGGACTTTTGCTGTATATCTTAACAACACTGGCTACAGAACAGCCTTTTTTGGAAAATACCTCAATGAATAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AATGGCAGCTACATCCCCCCTGGGTGGCGAGAATGGCTTGGATTAATCAAGAATTCTCGCTTCTATAATTACAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGTTTGTCGCAATGGCATCAAAGAAAAGCATGGATTTGATTATGCAAAGGACTACTTCACAGACTTAATCACTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACGAGAGCATTAATTACTTCAAAATGTCTAAGAGAATGTATCCCCATAGGCCCGTTATGATGGTGATCAGCCAC 1332
Query 1 -------------------------------------------------------ATGTGCT---------ATG 10
| |||| ||
Sbjct 1333 GCTGCGCCCCACGGCCCCGAGGACTCAGCCCCACAGTTTTCTAAACTGTACCCCAA--TGCTTCCCAACACAT- 1403
Query 11 GAACTCCTAGTTATAACTATGCACCAAATATGGATAAACACTGGATTATGCAGTACACAGGACCAATGCTGCCC 84
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 -AACTCCTAGTTATAACTATGCACCAAATATGGATAAACACTGGATTATGCAGTACACAGGACCAATGCTGCCC 1476
Query 85 ATCCACATGGAATTTACAAACATTCTACAGCGCAAAAGGCTCCAGACTTTGATGTCAGTGGATGATTCTGTGGA 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 ATCCACATGGAATTTACAAACATTCTACAGCGCAAAAGGCTCCAGACTTTGATGTCAGTGGATGATTCTGTGGA 1550
Query 159 GAGGCTGTATAACATGCTCGTGGAGACGGGGGAGCTGGAGAATACTTACATCATTTACACCGCCGACCATGGTT 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 GAGGCTGTATAACATGCTCGTGGAGACGGGGGAGCTGGAGAATACTTACATCATTTACACCGCCGACCATGGTT 1624
Query 233 ACCATATTGGGCAGTTTGGACTGGTCAAGGGGAAATCCATGCCATATGACTTTGATATTCGTGTGCCTTTTTTT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 ACCATATTGGGCAGTTTGGACTGGTCAAGGGGAAATCCATGCCATATGACTTTGATATTCGTGTGCCTTTTTTT 1698
Query 307 ATTCGTGGTCCAAGTGTAGAACCAGGATCAATAGTCCCACAGATCGTTCTCAACATTGACTTGGCCCCCACGAT 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 ATTCGTGGTCCAAGTGTAGAACCAGGATCAATAGTCCCACAGATCGTTCTCAACATTGACTTGGCCCCCACGAT 1772
Query 381 CCTGGATATTGCTGGGCTCGACACACCTCCTGATGTGGACGGCAAGTCTGTCCTCAAACTTCTGGACCCAGAAA 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 CCTGGATATTGCTGGGCTCGACACACCTCCTGATGTGGACGGCAAGTCTGTCCTCAAACTTCTGGACCCAGAAA 1846
Query 455 AGCCAGGTAACAGGTTTCGAACAAACAAGAAGGCCAAAATTTGGCGTGATACATTCCTAGTGGAAAGAGGCAAA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 AGCCAGGTAACAGGTTTCGAACAAACAAGAAGGCCAAAATTTGGCGTGATACATTCCTAGTGGAAAGAGGCAAA 1920
Query 529 TTTCTACGTAAGAAGGAAGAATCCAGCAAGAATATCCAACAGTCAAATCACTTGCCCAAATATGAACGGGTCAA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 TTTCTACGTAAGAAGGAAGAATCCAGCAAGAATATCCAACAGTCAAATCACTTGCCCAAATATGAACGGGTCAA 1994
Query 603 AGAACTATGCCAGCAGGCCAGGTACCAGACAGCCTGTGAACAACCGGGGCAGAAGTGGCAATGCATTGAGGATA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995 AGAACTATGCCAGCAGGCCAGGTACCAGACAGCCTGTGAACAACCGGGGCAGAAGTGGCAATGCATTGAGGATA 2068
Query 677 CATCTGGCAAGCTTCGAATTCACAAGTGTAAAGGACCCAGTGACCTGCTCACAGTCCGGCAGAGCACGCGGAAC 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 CATCTGGCAAGCTTCGAATTCACAAGTGTAAAGGACCCAGTGACCTGCTCACAGTCCGGCAGAGCACGCGGAAC 2142
Query 751 CTCTACGCTCGCGGCTTCCATGACAAAGACAAAGAGTGCAGTTGTAGGGAGTCTGGTTACCGTGCCAGCAGAAG 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 CTCTACGCTCGCGGCTTCCATGACAAAGACAAAGAGTGCAGTTGTAGGGAGTCTGGTTACCGTGCCAGCAGAAG 2216
Query 825 CCAAAGAAAGAGTCAACGGCAATTCTTGAGAAACCAGGGGACTCCAAAGTACAAGCCCAGATTTGTCCATACTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 CCAAAGAAAGAGTCAACGGCAATTCTTGAGAAACCAGGGGACTCCAAAGTACAAGCCCAGATTTGTCCATACTC 2290
Query 899 GGCAGACACGTTCCTTGCCCGTCGAATTTGAAGGTGAAATATATGACATAAATCTGGAAGAAGAAGAAGAATTG 972
|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2291 GGCAGACACGTTCCTTGTCCGTCGAATTTGAAGGTGAAATATATGACATAAATCTGGAAGAAGAAGAAGAATTG 2364
Query 973 CAAGTGTTGCAACCAAGAAACATTGCTAAGCGTCATGATGAAGGCCACAAGGGGCCAAGAGATCTCCAGGCTTC 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2365 CAAGTGTTGCAACCAAGAAACATTGCTAAGCGTCATGATGAAGGCCACAAGGGGCCAAGAGATCTCCAGGCTTC 2438
Query 1047 CAGTGGTGGCAACAGGGGCAGGATGCTGGCAGATAGCAGCAACGCCGTGGGCCCACCTACCACTGTCCGAGTGA 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439 CAGTGGTGGCAACAGGGGCAGGATGCTGGCAGATAGCAGCAACGCCGTGGGCCCACCTACCACTGTCCGAGTGA 2512
Query 1121 CACACAAGTGTTTTATTCTTCCCAATGACTCTATCCATTGTGAGAGAGAACTGTACCAATCGGCCAGAGCGTGG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2513 CACACAAGTGTTTTATTCTTCCCAATGACTCTATCCATTGTGAGAGAGAACTGTACCAATCGGCCAGAGCGTGG 2586
Query 1195 AAGGACCATAAGGCATACATTGACAAAGAGATTGAAGCTCTGCAAGATAAAATTAAGAATTTAAGAGAAGTGAG 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2587 AAGGACCATAAGGCATACATTGACAAAGAGATTGAAGCTCTGCAAGATAAAATTAAGAATTTAAGAGAAGTGAG 2660
Query 1269 AGGACATCTGAAGAGAAGGAAGCCTGAGGAATGTAGCTGCAGTAAACAAAGCTATTACAATAAAGAGAAAGGTG 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2661 AGGACATCTGAAGAGAAGGAAGCCTGAGGAATGTAGCTGCAGTAAACAAAGCTATTACAATAAAGAGAAAGGTG 2734
Query 1343 TAAAAAAGCAAGAGAAATTAAAGAGCCATCTTCACCCATTCAAGGAGGCTGCTCAGGAAGTAGATAGCAAACTG 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2735 TAAAAAAGCAAGAGAAATTAAAGAGCCATCTTCACCCATTCAAGGAGGCTGCTCAGGAAGTAGATAGCAAACTG 2808
Query 1417 CAACTTTTCAAGGAGAACAACCGTAGGAGGAAGAAGGAGAGGAAGGAGAAGAGACGGCAGAGGAAGGGGGAAGA 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2809 CAACTTTTCAAGGAGAACAACCGTAGGAGGAAGAAGGAGAGGAAGGAGAAGAGACGGCAGAGGAAGGGGGAAGA 2882
Query 1491 GTGCAGCCTGCCTGGCCTCACTTGCTTCACGCATGACAACAACCACTGGCAGACAGCCCCGTTCTGGAACCTGG 1564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2883 GTGCAGCCTGCCTGGCCTCACTTGCTTCACGCATGACAACAACCACTGGCAGACAGCCCCGTTCTGGAACC--- 2953
Query 1565 GATCTTTCTGTGCTTGCACGAGTTCTAACAATAACACCTACTGGTGTTTGCGTACAGTTAATGAGACGCATAAT 1638
Sbjct 2954 -------------------------------------------------------------------------- 2953
Query 1639 TTTCTTTTCTGTGAGTTTGCTACTGGCTTTTTGGAGTATTTTGATATGAATACAGATCCTTATCAGCTCACAAA 1712
||||||||
Sbjct 2954 ------------------------------------------------------------------CTCACAAA 2961
Query 1713 TACAGTGCACACGGTAGAACGAGGCATTTTGAATCAGCTACACGTACAACTAATGGAGCTCAGAAGCTGTCAAG 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2962 TACAGTGCACACGGTAGAACGAGGCATTTTGAATCAGCTACACGTACAACTAATGGAGCTCAGAAGCTGTCAAG 3035
Query 1787 GATATAAGCAGTGCAACCCAAGACCTAAGAATCTTGATGTTGGAAATAAAGATGGAGGAAGCTATGACCTACAC 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3036 GATATAAGCAGTGCAACCCAAGACCTAAGAATCTTGATGTTGGAAATAAAGATGGAGGAAGCTATGACCTACAC 3109
Query 1861 AGA--------ATG---TTGCTGTTCCTGGTACCCTGTTCGGCCCC-TCTAAC--------------------- 1901
||| ||| |.|.|| ||.|...|..||.||||| |||.||
Sbjct 3110 AGAGGACAGTTATGGGATGGATG-----GGAAGGTTAATCAGCCCCGTCTCACTGCAGACATCAACTGGCAAGG 3178
Query 1902 ----------CTCCAGAG---------------CTATG-GT----------CT-CAGATGCTTCCTTT------ 1932
||.||.|| ||||| || || |||| |||..|.|
Sbjct 3179 CCTAGAGGAGCTACACAGTGTGAATGAAAACATCTATGAGTACAGACAAAACTACAGA--CTTAGTCTGGTGGA 3250
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3251 CTGGACTAATTACTTGAAGGATTTAGATAGAGTATTTGCACTGCTGAAGAGTCACTATGAGCAAAATAAAACAA 3324
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3325 ATAAGACTCAAACTGCTCAAAGTGACGGGTTCTTGGTTGTCTCTGCTGAGCACGCTGTGTCAATGGAGATGGCC 3398
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3399 TCTGCTGACTCAGATGAAGACCCAAGGCATAAGGTTGGGAAAACACCTCATTTGACCTTGCCAGCTGACCTTCA 3472
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3473 AACCCTGCATTTGAACCGACCAACATTAAGTCCAGAGAGTAAACTTGAATGGAATAACGACATTCCAGAAGTTA 3546
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3547 ATCATTTGAATTCTGAACACTGGAGAAAAACCGAAAAATGGACGGGGCATGAAGAGACTAATCATCTGGAAACC 3620
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3621 GATTTCAGTGGCGATGGCATGACAGAGCTAGAGCTCGGGCCCAGCCCCAGGCTGCAGCCCATTCGCAGGCACCC 3694
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3695 GAAAGAACTTCCCCAGTATGGTGGTCCTGGAAAGGACATTTTTGAAGATCAACTATATCTTCCTGTGCATTCCG 3768
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3769 ATGGAATTTCAGTTCATCAGATGTTCACCATGGCCACCGCAGAACACCGAAGTAATTCCAGCATAGCGGGGAAG 3842
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3843 ATGTTGACCAAGGTGGAGAAGAATCACGAAAAGGAGAAGTCACAGCACCTAGAAGGCAGCGCCTCCTCTTCACT 3916
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3917 CTCCTCTGATTAGATGAAACTGTTACCTTACCCTAAACACAGTATTTCTTTTTAACTTTTTTATTTGTAAACTA 3990
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 3991 ATAAAGGTAATCACAGCCACCAACATTCCAAGCTACCCTGGGTACCTTTGTGCAGTAGAAGCTAGTGAGCATGT 4064
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4065 GAGCAAGCGGTGTGCACACGGAGACTCATCGTTATAATTTACTATCTGCCAAGAGTAGAAAGAAAGGCTGGGGA 4138
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4139 TATTTGGGTTGGCTTGGTTTTGATTTTTTGCTTGTTTGTTTGTTTTGTACTAAAACAGTATTATCTTTTGAATA 4212
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4213 TCGTAGGGACATAAGTATATACATGTTATCCAATCAAGATGGCTAGAATGGTGCCTTTCTGAGTGTCTAAAACT 4286
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4287 TGACACCCCTGGTAAATCTTTCAACACACTTCCACTGCCTGCGTAATGAAGTTTTGATTCATTTTTAACCACTG 4360
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4361 GAATTTTTCAATGCCGTCATTTTCAGTTAGATGATTTTGCACTTTGAGATTAAAATGCCATGTCTATTTGATTA 4434
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4435 GTCTTATTTTTTTATTTTTACAGGCTTATCAGTCTCACTGTTGGCTGTCATTGTGACAAAGTCAAATAAACCCC 4508
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4509 CAAGGACGACACACAGTATGGATCACATATTGTTTGACATTAAGCTTTTGCCAGAAAATGTTGCATGTGTTTTA 4582
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4583 CCTCGACTTGCTAAAATCGATTAGCAGAAAGGCATGGCTAATAATGTTGGTGGTGAAAATAAATAAATAAGTAA 4656
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4657 ACAAAATGAAGATTGCCTGCTCTCTCTGTGCCTAGCCTCAAAGCGTTCATCATACATCATACCTTTAAGATTGC 4730
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4731 TATATTTTGGGTTATTTTCTTGACAGGAGAAAAAGATCTAAAGATCTTTTATTTTCATCTTTTTTGGTTTTCTT 4804
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4805 GGCATGACTAAGAAGCTTAAATGTTGATAAAATATGACTAGTTTTGAATTTACACCAAGAACTTCTCAATAAAA 4878
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4879 GAAAATCATGAATGCTCCACAATTTCAACATACCACAAGAGAAGTTAATTTCTTAACATTGTGTTCTATGATTA 4952
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 4953 TTTGTAAGACCTTCACCAAGTTCTGATATCTTTTAAAGACATAGTTCAAAATTGCTTTTGAAAATCTGTATTCT 5026
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 5027 TGAAAATATCCTTGTTGTGTATTAGGTTTTTAAATACCAGCTAAAGGATTACCTCACTGAGTCATCAGTACCCT 5100
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 5101 CCTATTCAGCTCCCCAAGATGATGTGTTTTTGCTTACCCTAAGAGAGGTTTTCTTCTTATTTTTAGATAATTCA 5174
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 5175 AGTGCTTAGATAAATTATGTTTTCTTTAAGTGTTTATGGTAAACTCTTTTAAAGAAAATTTAATATGTTATAGC 5248
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 5249 TGAATCTTTTTGGTAACTTTAAATCTTTATCATAGACTCTGTACATATGTTCAAATTAGCTGCTTGCCTGATGT 5322
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 5323 GTGTATCATCGGTGGGATGACAGAACAAACATATTTATGATCATGAATAATGTGCTTTGTAAAAAGATTTCAAG 5396
Query 1933 -------------------------------------------------------------------------- 1932
Sbjct 5397 TTATTAGGAAGCATACTCTGTTTTTTAATCATGTATAATATTCCATGATACTTTTATAGAACAATTCTGGCTTC 5470
Query 1933 ------------------------------------------------- 1932
Sbjct 5471 AGGAAAGTCTAGAAGCAATATTTCTTCAAATAAAAGGTGTTTAAACTTT 5519
