Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11713
- Subject:
- NM_001002764.1
- Aligned Length:
- 4254
- Identities:
- 1420
- Gaps:
- 2721
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGAGGGGTTGGAGCGTGTGCGGATCTCCGCATCGGAACTGCGAGGGATCCTGGCCACTCTGGCTCCGCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCCGGGAGCAGAGAAAACATGAAGGAACTAAAGGAACCCAGACAGCGCAAAGATAATAGGCGTCCAGATTTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAATCTATAAGCCTGGACTTTCTCGACTAAGGAACAGACCTAAAACTAAGGAGGCTTCTGGGAATGAGGAATTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAGGATGAGATAGTAAATGACAGAGATTCTTCTGCTGTTGGGAATGATACACAGCTTATTCAAGTTTGCAAGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATTGGACAGCCAACAGCAAAATGGCCCTATAGATGCAGAAAATAGTCAGGCACAGGAAACTTTTCCAAAGACTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTGGACTAGAGGACCGAAGTCTAAAGATCATCAAAAGAAGCAAGAAACCAGACCTGCAGATCTACCAGCCTGGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGGCGGTTGCAGACCATTACCAAAGAGTCAGCAGGCAGGGCAGATGAAGAAGAGATCCTCAACCAAGTGGAGCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTTGAGGATAGAGGAGGATGAGTGTAAGGGAGAAGCTATAAAAGAAGAAGTTAATAACAAACCGGATAAAACCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGATAGAAAAGCACCAAAGTAATGACCGTGTAAGAACTGCCAAGGGAGAAAAGGGAAAAAAGATTGAAAAGGGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAGGGGTCAAAGAAGGTGGCTGATGACTCTGTCCCAGGAAAGCCTGGCTCTGTAAAGAGATACTCGAGATCAGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAAGAGAAGGAATCGCTACCGCACTTGCAGTACCAGCTCAGCTGGTAGCAACAACAGTGCTGAGGGAGCTGGCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGACCGATAATGGATGTCGCCGGCGGCGCCAGGATCGGGCCAAGGAGAGGCCACGACTGAAGAAGCAGGTATCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTGTCCTCAACTGATTCCTTAGATGAGGACAGAGTTGATGAGCCTGATGTCCTAGGGTCCAGGAGGAGCTCAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAGGAAGAAGCATTTAGAAAGAAATTGGTCTGGCTGTGGTGAGGGTGAACAGAAAAGCAATGGTAAAGAAAACC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAAGTGCCCTTCGTGTCACTTTTGATGCAGAAACCATGAGTAAAGACTCCCCTGTGGTGAGGTCAGTCAAAGAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AATGTGGATAGAATGAAGTCTGACAAAGGCCCAAGCAGTGGGGGTAAGGGCTCTGAGAAGCAGGAGCTCAGACA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCCGAGACAAGAACTTCGAGATCGTGGTCGTGGTATCCTGATTCTGCCTGCCCACACTGCCCTATCTGTCAGTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CATCAGGTTCTCCGGAGTCTACACCTTTGGGACCTCGACTTTTATTTGGATCTGGTAGTAAGGGATCTCGGAGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGGGGCCGTGGAGGCACTACCCGCCGACTATGGGACCCAAACAATCCTGACCAGAAGCCTGCCCTAAAAAGCCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GACACCTCAGCTACATTTCTTGGACACTGATGATGAAATTAGCCCTACATCTTGGGGTGATTCACGTCAGGCCC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAGCATCTTACTATAAATTTCAAAACTCTGATAACCCCTATTATTACCCTCGGACACCAGGCCCTGCCTCTCAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TATCCCTATGCAGGCTATAGCCCTCTGCAGTACCCAGTAGGCCCTACAAATGGTATGTATCCAGGGGCTTACTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCCGGGCTATCCTGCCCCCTCAGGACAATATGTGTGTAGCCCTCTCCCTGCTAGCACCATGAGTCCTGAGGAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGTGGCTGACAACCAGGAACTG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGCTCAGCAACCTGCTTTCCAGGGACCGCATCAGCACTGAGGGCATGGAGAAGATGGCTCAGCTCAGAACTGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACTACTGCAGCTGTACGAGCGCTGTATTCTATTAGATATTGAATTCTCCGACAGTCAGAATGTAGATCAGATCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGTGGAAGAACGCTTTCTATCAGGTGATTGAGAAGTTCAGGCAGCTTCTCAAGGATCCAAACAGTGAGAACCCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GAGCAGATTCGGAACAGACTCTTGGAGCTCTTAGATGAGGGCAGTGACTTCTTTGATAGTTTGCTTCAGAAACT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ACAGGTTACTTACAAGTTCAAACTGGAGGACTACATGGATGGGCTTGCCATTCGAAGCAAGCCTTTACGAAAAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CAGTGAAATATGCCTTGATCAGTGCTCAACGAAGTATGATTTGCCAAGGAGATATCTCTAGGTATCGGGAGCAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCCAACGATACAGCAAACTATGGGAAGGCTCGCAGTTGGTATCTGAAGGCTCAGCACATTGCTCCCAAGAATGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GCGCCCCTATAACCAGTTGGCTCTACTGGCAGTGTATACGAGGAGGAAGCTTGATGCTGTATATTACTATATGC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GCAGTTTAGCAGCCAGCAACCCTATCCTGACTGCCAAGGAGAGTCTCATGAGTTTATTTGAAGAGACTAAACGA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAGGCTGAACAGATGGAAAAGAAGCAGCATGAGGAATTTGATATGAGCCCTGATAAGTGGCGAAAAGGAAAGAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GTCTACTTTCCGGCATGTTGGGGATGACACTACTCGCCTGGAGATTTGGATTCATCCATCACATTCTCGGTCTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CCCAGGGCACTGAGTCTGGGAAGGATTCTGAGCAGGAGAATGGTCTGGGCAGCCTGAGTCCCAGTGATCTGAAC 2664
Query 1 ---------------------------------------------------------ATGGAGACATTCCCTGC 17
|||||||||||||||||
Sbjct 2665 AAAAGGTTCATCCTCAGTTTTCTCCATGCCCATGGGAAGCTGTTTACCCGGATTGGGATGGAGACATTCCCTGC 2738
Query 18 AGTGGCTGAGAAGGTCCTCAAGGAGTTCCAGGTGTTACTGCAGCACAGCCCCTCTCCCATTGGAAGTACCCGCA 91
||||||||||||||||||.|||||||||||.||.||.||||||||.|||||.|||||.||||||||||||||.|
Sbjct 2739 AGTGGCTGAGAAGGTCCTTAAGGAGTTCCAAGTATTGCTGCAGCATAGCCCATCTCCTATTGGAAGTACCCGTA 2812
Query 92 TGCTGCAGCTTATGACCATCAATATGTTTGCAGTACACAACTCCCAGCTGAAAGACTGCTTCTCGGAGGAGTGC 165
||||||||||||||||||||||.||||||||.||.||.|||||||||.||||||||||||||||.||||||||.
Sbjct 2813 TGCTGCAGCTTATGACCATCAACATGTTTGCCGTGCATAACTCCCAGTTGAAAGACTGCTTCTCAGAGGAGTGT 2886
Query 166 CGCTCTGTGATCCAGGAACAAGCCGCAGCTCTGGGCTTGGCCATGTTTTCTCTACTGGTCCGCCGCTGCACCTG 239
||.||||||||||||||||||||.|||.|..||||||||||.|||||||||||||||||||..||||||||.||
Sbjct 2887 CGTTCTGTGATCCAGGAACAAGCTGCATCCTTGGGCTTGGCTATGTTTTCTCTACTGGTCCAGCGCTGCACATG 2960
Query 240 CTTACTTAAGGAGTCCGCCAAAGCTCAGCTGTCCTCTCCTGAGGACCAGGATGACCAAGACGACATCAAGGTGT 313
|.||||||||||.||.||.|||||||||||||||||||||||||||||.||.||||||||.|||||||||||.|
Sbjct 2961 CCTACTTAAGGACTCTGCTAAAGCTCAGCTGTCCTCTCCTGAGGACCAAGAGGACCAAGATGACATCAAGGTAT 3034
Query 314 CTTCCTTTGTCCCGGACCTGAAGGAGCTGCTCCCCAGTGTCAAAGTCTGGTCAGATTGGATGCTCGGCTACCCG 387
|||||||.||||||||||||||||||||||||||||||||.|||||||||||.|||||||||||.||||||||.
Sbjct 3035 CTTCCTTCGTCCCGGACCTGAAGGAGCTGCTCCCCAGTGTGAAAGTCTGGTCTGATTGGATGCTTGGCTACCCA 3108
Query 388 GACACCTGGAATCCTCCTCCCACATCCCTGGATCTGCCCTCGCATGTTGCTGTGGATGTATGGTCGACGCTGGC 461
|||||||||||||||||.||||||||..||||||||||||.|||.||||||||||||||.|||||.||.||.||
Sbjct 3109 GACACCTGGAATCCTCCACCCACATCTTTGGATCTGCCCTTGCAGGTTGCTGTGGATGTCTGGTCAACACTAGC 3182
Query 462 TGATTTCTGTAACATACTGACTGCAGTGAATCAGTCTGAGGTGCCACTGTACAAGGACCCGGATGATGACCTCA 535
|||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 3183 TGATTTCTGTAACATACTGACTGCAGTCAATCAGTCTGAGGTGCCACTGTACAAGGACCCAGATGATGACCTCA 3256
Query 536 CCCTTCTTATCCTGGAAGAGGATCGGCTTCTCTCGGGCTTTGTCCCCTTGCTGGCTGCCCCTCAGGACCCCTGC 609
||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 3257 CCCTGCTTATCCTGGAAGAGGATCGGCTTCTCTCTGGCTTTGTCCCCTTGCTGGCTGCCCCTCAGGACCCCTGC 3330
Query 610 TACGTGGAGAAAACCTCGGATAAGGTTATTGCAGCTGACTGCAAAAGGGTCACAGTGCTGAAGTATTTTCTGGA 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 TACGTGGAGAAAACCTCGGATAAGGTTATTGCAGCTGACTGCAAAAGGGTCACAGTGCTGAAGTATTTTCTGGA 3404
Query 684 AGCCCTTTGTGGACAAGAAGAGCCTCTGCTGGCATTCAAGGGTGGAAAGTATGTGTCAGTGGCACCCGTCCCAG 757
||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 3405 AGCCCTTTGTGGACAAGAAGAGCCTCTGCTGGCATTCAAGGGTGGAAAATATGTGTCAGTGGCACCCGTCCCAG 3478
Query 758 ACACCATGGGAAAGGAAATGGGAAGCCAAGAGGGAACACGACTGGAAGATGAGGAGGAGGATGTGGTGATTGAA 831
||||||||||||||||||||||||||||||||||||.||.|||||||||||||||.||.|||||||||||||||
Sbjct 3479 ACACCATGGGAAAGGAAATGGGAAGCCAAGAGGGAAAACAACTGGAAGATGAGGAAGAAGATGTGGTGATTGAA 3552
Query 832 GACTTTGAGGAAGATTCAGAGGCTGAAGGCAGCGGAGGCGAGGATGACATCAGGGAGCTTCGGGCCAAGAAGCT 905
||||||||||||||||||||||||||||||||.||.||.|||||||||||||||||.|||||||||||||||||
Sbjct 3553 GACTTTGAGGAAGATTCAGAGGCTGAAGGCAGTGGGGGTGAGGATGACATCAGGGAACTTCGGGCCAAGAAGCT 3626
Query 906 GGCTCTGGCCAGGAAGATAGCTGAGCAGCAGCGTCGCCAGGAAAAGATCCAGGCTGTCCTGGAGGACCACAGTC 979
||||||.||.|||||||||||||||||||||||||||||||||||||||||||||||..||||.|||||.||||
Sbjct 3627 GGCTCTAGCAAGGAAGATAGCTGAGCAGCAGCGTCGCCAGGAAAAGATCCAGGCTGTTTTGGAAGACCAGAGTC 3700
Query 980 AGATGAGGCAGATGGAGCTCGAAATCAGACCTTTGTTCCTCGTACCAGACACCAACGGCTTCATTGACCACCTG 1053
|||||||||||||||||||.||.||||||||.|||||||||||||||||.||||||||||||||||||||||||
Sbjct 3701 AGATGAGGCAGATGGAGCTGGAGATCAGACCCTTGTTCCTCGTACCAGATACCAACGGCTTCATTGACCACCTG 3774
Query 1054 GCCAGTCTGGCGCGGCTGCTGGAGAGCAGGAAGTACATCCTGGTGGTGCCCCTCATCGTGATCAATGAGCTGGA 1127
|||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 GCCAGTCTGGCTCGGCTGCTGGAGAGCAGGAAGTACATCCTGGTGGTGCCCCTCATCGTGATCAATGAGCTGGA 3848
Query 1128 CGGCCTGGCCAAGGGGCAGGAGACAGACCACCGGGCTGGGGGCTACGCCCGTGTGGTACAAGAGAAGGCCCGCA 1201
||||||.|||||.||||||||||||||||||||||||||||||||.|||||||||||.|||||.||||||||.|
Sbjct 3849 CGGCCTCGCCAAAGGGCAGGAGACAGACCACCGGGCTGGGGGCTATGCCCGTGTGGTGCAAGAAAAGGCCCGAA 3922
Query 1202 AGTCCATCGAGTTCCTCGAGCAGCGATTCGAGAGTCGGGACTCTTGCCTGCGAGCCCTGACCAGCCGTGGCAAT 1275
|.|||||.|||||||||||.|.|.||||.||||||||||||||.||||||||.|||.|||||||||||||||||
Sbjct 3923 AATCCATTGAGTTCCTCGAACGGAGATTTGAGAGTCGGGACTCCTGCCTGCGGGCCTTGACCAGCCGTGGCAAT 3996
Query 1276 GAACTCGAATCCATCGCCTTCCGCAGTGAGGACATCACTGGCCAGCTGGGTAACAACGATGATCTCATCCTGTC 1349
|||||.|||||.|||||||||||.|||||||||||.|||||.||||||||||||||||||||.||.|||||.||
Sbjct 3997 GAACTTGAATCTATCGCCTTCCGAAGTGAGGACATTACTGGACAGCTGGGTAACAACGATGACCTGATCCTCTC 4070
Query 1350 CTGCTGCCTCCACTACTGCAAAGACAAGGCTAAGGACTTCATGCCCGCCAGCAAAGAGGAGCCAATCCGGCTAC 1423
.||||||||.||||||||||||||||||||||||||.|.|||||||.||||||||||||||||||||||.||..
Sbjct 4071 TTGCTGCCTGCACTACTGCAAAGACAAGGCTAAGGATTACATGCCCACCAGCAAAGAGGAGCCAATCCGCCTGT 4144
Query 1424 TGCGGGAGGTGGTGCTGTTGACGGATGACCGGAACCTGCGTGTGAAGGCGCTCACAAGGAATGTTCCTGTACGG 1497
|.||||||||||||.||.||||.|||||.||||||||.|||||.||||||||.|||||||||||.|||||..||
Sbjct 4145 TACGGGAGGTGGTGTTGCTGACCGATGATCGGAACCTTCGTGTAAAGGCGCTGACAAGGAATGTGCCTGTGAGG 4218
Query 1498 GACATCCCAGCCTTCCTCACGTGGGCCCAGGTGGGC 1533
|||||||||||||||||.||||||||||||||||||
Sbjct 4219 GACATCCCAGCCTTCCTTACGTGGGCCCAGGTGGGC 4254
