Nucleotide Global Alignment

Description

• Query: ccsbBroad304_11921
• Subject: NM_001144905.2
• Aligned Length: 1272
• Identities: 901
• Gaps: 279

Alignment

Query    1  ATGGCCTCAGCCTGCCCAGGCTCTGATTTCACGTCTATCCATTCAGAGGAGGAACAGCTGAGAGGCCT--TGGA  72
            |||     ||             |||.|.||.|  .|.|||   || ||.|.|.||||||   |||||  ||||
Sbjct    1  ATG-----AG-------------TGACTCCAAG--GAACCA---AG-GGTGCAGCAGCTG---GGCCTCCTGGA  47

Query   73  -----------------------------TTCCGACAGAC-------TCGAG--GAT--------ACAAGAG--  98
                                         ||||.|.||||       ||.||  |||        |||||||  
Sbjct   48  AGATCCAACAACCAGTGGCATCAGACTTTTTCCAAGAGACTTTCAATTCCAGCAGATACATGGCCACAAGAGCT  121

Query   99  -----------CTTAGC---------------------------------------------------------  104
                       |||.||                                                         
Sbjct  122  CTACAGGGTGTCTTGGCCATGGCGCCCTGGTGCTGCAACTCCTCTCCTTCATGCTCTTGGCTGGGGTCCTGGTG  195

Query  105  --------------AGTGTCCAAGGTCCCCAGCTCCATAAGTCAGGAACAATCCAGGCAAGACGCGATCTACCA  164
                          ||||||||||||||||||||||.|||||||||||||||||..|||||||||.||||||||
Sbjct  196  GCCATCCTTGTCCAAGTGTCCAAGGTCCCCAGCTCCCTAAGTCAGGAACAATCCGAGCAAGACGCAATCTACCA  269

Query  165  GAACCTGACCCAGCTTAAAGCTGCAGTGGGTGAGCTCTCAGAGAAATCCAAGCTGCAGGAGATCTACCAGGAGC  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  270  GAACCTGACCCAGCTTAAAGCTGCAGTGGGTGAGCTCTCAGAGAAATCCAAGCTGCAGGAGATCTACCAGGAGC  343

Query  239  TGACCCAGCTGAAGGCTGCAGTGGGTGAGCTTCCAGAGAAATCTAAGCTGCAGGAGATCTACCAGGAGCTGACC  312
            |||||||||||||||||||||||||||||.|.|||||||||||.||||||||||||||||||||||||||||||
Sbjct  344  TGACCCAGCTGAAGGCTGCAGTGGGTGAGTTGCCAGAGAAATCCAAGCTGCAGGAGATCTACCAGGAGCTGACC  417

Query  313  CGGCTGAAGGCTGCAGTGGGTGAGCTTCCAGAGAAATCTAAGCTGCAGGAGATCTACCAGGAGCTGACCTGGCT  386
            ||||||||||||||||||||||||.|.|||||||||||.||||||||||||||||||||||||||||||.||||
Sbjct  418  CGGCTGAAGGCTGCAGTGGGTGAGTTGCCAGAGAAATCCAAGCTGCAGGAGATCTACCAGGAGCTGACCCGGCT  491

Query  387  GAAGGCTGCAGTGGGTGAGCTTCCAGAGAAATCTAAGATGCAGGAGATCTACCAGGAGCTGACTCGGCTGAAGG  460
            |||||||||||||||||||.|.|||||||||||.|||.|||||||||||||||||||||||||           
Sbjct  492  GAAGGCTGCAGTGGGTGAGTTGCCAGAGAAATCCAAGCTGCAGGAGATCTACCAGGAGCTGAC-----------  554

Query  461  CTGCAGTGGGTGAGCTTCCAGAGAAATCTAAGCAGCAGGAGATCTACCAGGAGCTGACCCGGCTGAAGGCTGCA  534
                                                 |||                     |||||||||||||
Sbjct  555  -------------------------------------GGA---------------------GCTGAAGGCTGCA  570

Query  535  GTGGGTGAGCTTCCAGAGAAATCTAAGCAGCAGGAGATCTACCAGGAGCTGACCCGGCTGAAGGCTGCAGTGGG  608
            |||||||||.|.|||||||||||.||||.||||||||||||||||||||||||||.||||||||||||||||||
Sbjct  571  GTGGGTGAGTTGCCAGAGAAATCCAAGCTGCAGGAGATCTACCAGGAGCTGACCCAGCTGAAGGCTGCAGTGGG  644

Query  609  TGAGCTTCCAGAGAAATCTAAGCAGCAGGAGATCTACCAGGAGCTGACCCAGCTGAAGGCTGCAGTGGAACGCC  682
            ||||.|.|||||..|.||.|||||||||.|.|||||.||.||.||||||.|..|||||.|||||.|.|||||||
Sbjct  645  TGAGTTGCCAGACCAGTCCAAGCAGCAGCAAATCTATCAAGAACTGACCGATTTGAAGACTGCATTTGAACGCC  718

Query  683  TGTGCCACCCCTGTCCCTGGGAATGGACATTCTTCCAAGGAAACTGTTACTTCATGTCTAACTCCCAGCGGAAC  756
            ||||||.||.|||||||..|||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  719  TGTGCCGCCACTGTCCCAAGGACTGGACATTCTTCCAAGGAAACTGTTACTTCATGTCTAACTCCCAGCGGAAC  792

Query  757  TGGCACGACTCCATCACCGCCTGCAAAGAAGTGGGGGCCCAGCTCGTCGTAATCAAAAGTGCTGAGGAGCAGAA  830
            ||||||||||||.|||||||||||.|.||||||.||||||||||||||||||||||||.|||||||||||||||
Sbjct  793  TGGCACGACTCCGTCACCGCCTGCCAGGAAGTGAGGGCCCAGCTCGTCGTAATCAAAACTGCTGAGGAGCAGAA  866

Query  831  CTTCCTACAGCTGCAGTCTTCCAGAAGTAACCGCTTCACCTGGATGGGACTTTCAGATCTAAATCAGGAAGGCA  904
            ||||||||||||||||.|||||||.||||||||||||.|||||||||||||||||||.||||||||||||||||
Sbjct  867  CTTCCTACAGCTGCAGACTTCCAGGAGTAACCGCTTCTCCTGGATGGGACTTTCAGACCTAAATCAGGAAGGCA  940

Query  905  CGTGGCAATGGGTGGACGGCTCACCTCTGTTGCCCAGCTTCAAGCAGTATTGGAACAGAGGAGAGCCCAACAAC  978
            ||||||||||||||||||||||||||||||..|||||||||.|||.|||.||||||||.|||||.||||||||.
Sbjct  941  CGTGGCAATGGGTGGACGGCTCACCTCTGTCACCCAGCTTCCAGCGGTACTGGAACAGTGGAGAACCCAACAAT  1014

Query  979  GTTGGGGAGGAAGACTGCGCGGAATTTAGTGGCAATGGCTGGAACGACGACAAATGTAATCTTGCCAAATTCTG  1052
            ...|||.|.||||||||.||||||||||||||||.|||||||||||||.|...||||.|..|||.|||.|.|||
Sbjct 1015  AGCGGGAATGAAGACTGTGCGGAATTTAGTGGCAGTGGCTGGAACGACAATCGATGTGACGTTGACAATTACTG  1088

Query 1053  GATCTGCAAAAAGTCCGCAGCCTCCTGCTCCAGGGATGAAGAACAGTTTCTTTCTCCAGCCCCTGCCACCCCAA  1126
            |||||||||||||.||||||   ||||||.|||.||.|||                                  
Sbjct 1089  GATCTGCAAAAAGCCCGCAG---CCTGCTTCAGAGACGAA----------------------------------  1125

Query 1127  ACCCCCCTCCTGCG  1140
                          
Sbjct 1126  --------------  1125