Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11931
- Subject:
- XR_001737207.1
- Aligned Length:
- 3951
- Identities:
- 962
- Gaps:
- 2966
Alignment
Query 1 ----------------------------------------------ATGGCGACTGATACGTCTCAAG------ 22
.||||| ||..||.|| ||
Sbjct 1 GGGGGGCGGGGCGGCAGAGCTCGGCGGCTGGGACTGGAGGACAGCGGTGGCG---GAGGCGACT--AGCGGCGG 69
Query 23 -GTGAAC-TCGTCCATCCTA-AGGC--------ACTC-----CCACTTATAGTAGGAGCTCAGCTGATCCACGC 80
|.||.| .|| ||.| |||| ||.| || |||| .|.||.|| ||||
Sbjct 70 CGGGAGCGGCG-----CCGAGAGGCCGTGCGGGACGCGGGCGCC---------AGGA--CCGGCCGA---ACGC 124
Query 81 GGACAAGTTAGGTGAGGTAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTC 154
.||.| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 AGAGA---------AGGTAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTC 189
Query 155 CCAAAAGCAAGCTTGCTGAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACT 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CCAAAAGCAAGCTTGCTGAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACT 263
Query 229 GTAGAAGAACAAGAGAATGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 GTAGAAGAACAAGAGAATGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAA 337
Query 303 TGAAGAGAAGGAAGAAAATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TGAAGAGAAGGAAGAAAATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGA 411
Query 377 AGAAAGTGAAAAAAACAATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACA 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGAAAGTGAAAAAAACAATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACA 485
Query 451 CCGATGGCTTCTTCCCCACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAG 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CCGATGGCTTCTTCCCCACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAG 559
Query 525 TGGTGCATCAGTGGTTGCTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TGGTGCATCAGTGGTTGCTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTT 633
Query 599 ATCTCCTTAAACAAGCACTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCT 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 ATCTCCTTAAACAAGCACTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCT 707
Query 673 GGAAGTTTTGTTGTGGTTCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGC 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GGAAGTTTTGTTGTGGTTCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGC 781
Query 747 AGTGGATCCAGAACCACAAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAG 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AGTGGATCCAGAACCACAAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAG 855
Query 821 AAGCTTCCTACAGTCTCATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 AAGCTTCCTACAGTCTCATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAG 929
Query 895 CTGTTGAAGAACGCTCTGCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGG 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 CTGTTGAAGAACGCTCTGCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGG 1003
Query 969 GACATTCCAGAAATGGGGTTTCGCCG-------TGTTGCCCAGG---CTACTCTTGAACTCC--TGGGTTCAG- 1029
||||||||||.|| |.||| ||.|||..||| ||..||||||.||.| |||| ||
Sbjct 1004 GACATTCCAGGAA--------CTCCGACCCACCTGGTGCAGAGGAGTCTTGTCTTGACCTGCTTTGGG---AGA 1066
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1067 GTGTTGTCTTGATGCTTTTCTCTTCCTCCTTGGAAAACAGCTGAAGAAATCAGGGGAGAAACCCCTGCTTGGTG 1140
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1141 GAAGCCTGATGGAATATGCAATCTTGTCTGCCATTGCTGCCATGAATGAGCCGAAGACCTGCTCTACCACTGCT 1214
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1215 CTGAAGAAGTATGTCCTAGAGAATCACCCAGGAACCAATTCTAACTATCAAATGCATTTGCTGAAAAAAACCCT 1288
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1289 GCAGAAATGCGAAAAGAATGGGTGGATGGAACAGATCTCTGGGAAAGGGTTCAGTGGCACCTTCCAGCTCTGTT 1362
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1363 TTCCCTATTATCCCAGCCCAGGAGTTCTGTTTCCGAAGAAAGAGCCAGATGATTCTAGAGATGAGGATGAAGAT 1436
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1437 GAAGATGAGTCATCAGAAGAAGACTCTGAGGATGAAGAGCCGCCACCTAAGAGAAGGTTGCAGAAGAAAACCCC 1510
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1511 AGCCAAGTCCCCAGGGAAGGCCGCATCTGTGAAGCAGAGAGGGTCCAAACCTGCACCTAAAGTCTCAGCTGCCC 1584
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1585 AGCGGGGGAAAGCTAGGCCCTTGCCTAAGAAAGCACCTCCTAAGGCCAAAACGCCTGCCAAGAAGACCAGACCC 1658
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1659 TCATCCACAGTCATCAAGAAACCTAGTGGTGGCTCCTCAAAGAAGCCTGCAACCAGTGCAAGAAAGGAAGTAAA 1732
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1733 ATTGCCGGGCAAGGGCAAATCCACCATGAAGAAGTCTTTCAGAGTGAAAAAGTAAATTTTATAGGAAAAAAGGG 1806
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1807 TATCATGATGAAATTCAAAATCTTATTTTCTAAGGTCAGTGTGCATTTGTTTAGTTTTGATGCTTTTCAAATTA 1880
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1881 CATTATTTTCCTCCCCTATGAACATTGTGGGGAGGGACTCTAAATAAACCAGTTTAGGCATTTGCTAGCTTTAG 1954
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1955 GTGCTTTTATTGGTGCCTGCCCTTTTCCTTGTTCATTTTAATTTCTGCAATAATCCTGGACTTTCCTAAACTAT 2028
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2029 GTAATGTATACTTGTCCTTTTTCTCTGCCTCCCCCAACCCCCTGTTGTTTTTATGGTCAGCTTTGCCTTTTTTT 2102
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2103 TTTCTTCCAATTTTATCTAAACAGTTGCAGAGATTTTTATATTTGTAGAAAGCATCAAGAACGGTATGCCAGTC 2176
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2177 AGGTCCTGGAAGTAAAATGGAGGCACAATATAGCACTGACTGAGTTGTAAAGCCTCCTGCCTGGAGACTTCAGT 2250
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2251 TATAGCTGTAATAATTAATCTTATTTATAAAAGCCACTCCACTAACCTTTTCTCTCCAACTGTAAACACAGAGA 2324
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2325 CAGCTTTGGGAATAAGCCAAAAACAGGGTGATCTCATTAGATTTTGAAGATATATGACTCCTTTGGGCTACATT 2398
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2399 TCATATTGATCAATTTCTAGGTATTTTTCACTGGCCCAAAGTATTGCATTCCCTTAACAGCAAGCACAAGTTCT 2472
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2473 CTATATCACTTGTTTTTTGTTGTTGTTGTTGTTGTCGTCGTTGTTTTGAGACGGAGTCTTGCTCAGGTGCCCCG 2546
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2547 GAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCTTCAGCCTC 2620
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2621 CCGAGTAGCTGGGATTACAGGTGTGTACCACCACGCCTGGCAATTTTTTTGTATTTTTAGTAGAGATGGGGTTT 2694
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2695 CGCCGTGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGG 2768
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2769 GATTACAGGAGTGAGCCACTGTGCCTGGCCTATCCCACTTGGTTTTTGACTGAAGGGGAAGTGTAGAAATATAT 2842
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2843 TGATTTGTGATTTCTGGTGTCACCTGTGTTACCAAAAATCAAAACAAATCTTTTTTATTTTTTATTATTATTAT 2916
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2917 TATTTTTGAGACAGAGTCTCGCTCTGTCGCCCAGTGTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAAACTC 2990
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2991 CGCCTCCCAGGTTCAAGCGATTCTCCCACCTCAGCCTCCTGAGTTGGGTCCTACAGGCGCACACGACCACGCCC 3064
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3065 AGCTAATTTTTTGTATTTTTAGTAGAGTTGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTC 3138
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3139 GTGATCCACTCACCTCAGCCTCCCAAAATCCTGGGGTTACAGATGTGAGCTACCACTCACGGCCCAAATCTTCT 3212
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3213 TGATCATATGTTTAAATATATTTTTTAATATTTGGAGCATGAGTTGTCACTTCTTGTTTGCCTTTTTTATAAGG 3286
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3287 AAATGTTGGAGAGTTACATCATTGCTAATGTAGAAATGTTAAGTGGAAAAATATACAGTTTGGTAAAATAAACT 3360
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3361 AGATTCTACATTTATTTGTGGGTTTTTTTCCCCTCCTTTCTTTCCACAGCACTTTTGATATCAAGCAAGTGGCT 3434
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3435 TCCTTTTTGAGATATTAAAAAAAAAAAGAAAAGGAAAAAAGTAAATGAAGCCCAACTACCTAACCCTTTCTTAT 3508
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3509 TTGTATTTGTTTTAGTATTGTGAAGTTGTGTTAAATAGTACTAGCTAGAAATACAAATTTCTGGTTATCATTTC 3582
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3583 TCTTCCCTGTGGCACTTGACATTTTAATTGTCTTAAAGTTTTTGAAGTACATCTTCTGGCCCCTTGAGTACTGC 3656
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3657 CAGAGGCAAAAGATGTTTGTTTCTTATTCATTCCACTTTTGTCTCCTGGGATCCCTTCTGTAGCCTAAAGTATG 3730
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3731 GCTGGGAAATGGACTTGAGAAGATTGGCTTGAATTAGATCATAATCATGTGTGATCCCATCATGAATTCATTGG 3804
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3805 AATTTGTGTTGCATGTAAGGCAATCTTTCCTGTTGTAAATCTTCCTTTTTTAATGTACATATATTTTGAAAAAT 3878
Query 1030 ----------------------------- 1029
Sbjct 3879 ATGAATAAACATGAAATTTTAAAAGCTGC 3907
