Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11953
Subject:
NM_001368039.1
Aligned Length:
2011
Identities:
1467
Gaps:
527

Alignment

Query    1  ATGTTAATTGATGAAAGGTTACGATGTGAGCATCATAAAGCTAATTATCAGACACTGAAGGCTGAACACACAAG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GTTGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AACTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTG  222
                                                                             |||||||||
Sbjct    1  -----------------------------------------------------------------ATGAAACTG  9

Query  223  CAGATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   10  CAGATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGA  83

Query  297  ACGTTTTAGGAATCTAGATGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACAT  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   84  ACGTTTTAGGAATCTAGATGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACAT  157

Query  371  TTCTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  158  TTCTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAA  231

Query  445  TCAGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  232  TCAGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGA  305

Query  519  CAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  306  CAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAG  379

Query  593  TAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  380  TAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAG  453

Query  667  TTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGCTT  740
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct  454  TTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGTTT  527

Query  741  GGAAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  528  GGAAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAA  601

Query  815  TAAATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGAG  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  602  TAAATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGAG  675

Query  889  ACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  676  ACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGA  749

Query  963  CAATGAAATTCTCAAAGCAGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  750  CAATGAAATTCTCAAAGCAGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTA  823

Query 1037  AAGTACAAGCTGCCAAAGAAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAAC  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  824  AAGTACAAGCTGCCAAAGAAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAAC  897

Query 1111  AGATTAGCAGATTTGGAGAAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  898  AGATTAGCAGATTTGGAGAAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGA  971

Query 1185  GAAATTGCGGGCTTCACAGATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTCAGC  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  972  GAAATTGCGGGCTTCACAGATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTCAGC  1045

Query 1259  AACAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGT  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046  AACAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGT  1119

Query 1333  TTGCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAAT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120  TTGCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAAT  1193

Query 1407  GGTGGAGAGATTAAAACAAGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194  GGTGGAGAGATTAAAACAAGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGA  1267

Query 1481  CATTGGAAGAGAAACAGATACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAA  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268  CATTGGAAGAGAAACAGATACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAA  1341

Query 1555  AAGTACAATCAAGCTAAGGAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAG---------CTTGA------  1613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||.|      
Sbjct 1342  AAGTACAATCAAGCTAAGGAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAGAGAAAATCTCTTCATGAAAA  1415

Query 1614  ---------------ACAGGA-----------TCTT----------------GAGTTGG---------------  1630
                           |||.||           ||||                ||.||||               
Sbjct 1416  CAAATTGAAAAGACTACAAGAGAAAGTAGAAGTCTTGGAGGCAAAGAAAGAAGAATTGGAAACAGAAAATCAGG  1489

Query 1631  --------------GATG-CCCTTCTG-TGACTGATAC-------------------------ATACAGAGA--  1661
                          .||| .||||.|| .|||| ||||                         |||||||||  
Sbjct 1490  TCTTAAATAGACAAAATGTTCCTTTTGAAGACT-ATACAAGGCTTCAAAAAAGACTAAAAGATATACAGAGAAG  1562

Query 1662  ---------------GAGTGTA-------TTCCCCCCA--CCCCCATTGAAGAGAG-ATCT-------------  1697
                           .|||.||       ||||...||  ||.|||      |.|| ||||             
Sbjct 1563  ACATAATGAATTTCGAAGTCTAATTTTGGTTCCTAACATGCCTCCA------ACAGCATCTATCAATCCTGTTA  1630

Query 1698  -CTTGAAG------------------------------------------------------------------  1704
             |||..||                                                                  
Sbjct 1631  GCTTTCAGTCATCAGCCATGGTTCCAAGCATGGAACTACCATTTCCTCCTCATATGCAGGAGGAACAACATCAA  1704

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 1705  AGGGAACTCTCTCTACTTCGCAAAAGACTAGAAGAACTGGAAACAACACAAAGAAAACAACTAGAGGAACTTGG  1778

Query 1705  -------------  1704
                         
Sbjct 1779  ATCTTCCGGAGAA  1791

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.