Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11953
Subject:
NM_001368042.1
Aligned Length:
1707
Identities:
513
Gaps:
1191

Alignment

Query    1  ATGTTAATTGATGAAAGGTTACGATGTGAGCATCATAAAGCTAATTATCAGACACTGAAGGCTGAACACACAAG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GTTGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AACTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CAGATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  ACGTTTTAGGAATCTAGATGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACAT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  TTCTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAA  444
                                                                                 |||||
Sbjct    1  ---------------------------------------------------------------------ATGAA  5

Query  445  TCAG-AGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAG  517
            .|.| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    6  ACTGCAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAG  79

Query  518  ACAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAA  591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   80  ACAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAA  153

Query  592  GTAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCA  665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  154  GTAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCA  227

Query  666  GTTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGCT  739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  228  GTTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGTT  301

Query  740  TGGAAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAA  813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  TGGAAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAA  375

Query  814  ATAAATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGA  887
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  376  ATAAATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGA  449

Query  888  GACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGG--ATTACAGTC  959
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||       
Sbjct  450  GACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGTAAT-------  516

Query  960  AGACAATGAAATTCTCAAAGCAGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATAC  1033
                 |||                                                                  
Sbjct  517  -----ATG------------------------------------------------------------------  519

Query 1034  GTAAAGTACAAGCTGCCAAAGAAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAG  1107
                                                                                      
Sbjct  520  --------------------------------------------------------------------------  519

Query 1108  AACAGATTAGCAGATTTGGAGAAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGA  1181
                                                                                      
Sbjct  520  --------------------------------------------------------------------------  519

Query 1182  AGAGAAATTGCGGGCTTCACAGATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTC  1255
                                                                                      
Sbjct  520  --------------------------------------------------------------------------  519

Query 1256  AGCAACAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGT  1329
                                                                                      
Sbjct  520  --------------------------------------------------------------------------  519

Query 1330  AGTTTGCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGA  1403
                                                                                      
Sbjct  520  --------------------------------------------------------------------------  519

Query 1404  AATGGTGGAGAGATTAAAACAAGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAA  1477
                                                                                      
Sbjct  520  --------------------------------------------------------------------------  519

Query 1478  AGACATTGGAAGAGAAACAGATACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAA  1551
                                                                                      
Sbjct  520  --------------------------------------------------------------------------  519

Query 1552  GAAAAGTACAATCAAGCTAAGGAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAGCTTGAACAGGATCTTGA  1625
                                                                                      
Sbjct  520  --------------------------------------------------------------------------  519

Query 1626  GTTGGGATGCCCTTCTGTGACTGATACATACAGAGAGAGTGTATTCCCCCCACCCCCATTGAAGAGAGATCTCT  1699
                                                                                      
Sbjct  520  --------------------------------------------------------------------------  519

Query 1700  TGAAG  1704
                 
Sbjct  520  -----  519

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