Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11953
Subject:
NR_144441.2
Aligned Length:
3034
Identities:
1447
Gaps:
1439

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACCCCTGAGGATCCCGGTCCACGCGGAGGAGTGGGGCTTTTCACCGCCGCCGCCGCCGCCCTCGGACCTCTCCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGGATACTTCACATTTCCCTAGGGACGGGAGCCCGAGGGGTCCGTTCGGCCCTCTTCCTCTCGCTGGGCCGACA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCCGCTGTAGGACCGTAACCCTTAGTCCCAATGCCTCCGTAAGCGGAGTTGAGTGGGTGCCTGTGGTTGGAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGTGGAGGTGTCCCCGGTGGCGAGCGCGGCCAGAACTGCGGTCACTTAAGTTTTCCGTGTGCGGGTTGCAAGGA  296

Query    1  ------------ATGTTA-ATTGATGAAAGGTTACGATGTGAGCATCATA----------------AAG--CTA  43
                        .||.|| |..||.||.|..|...||| ||||.|||.||                |||  .||
Sbjct  297  GCGTGCGTGCGTCTGGTATAGGGAGGACACCTCTGGAT-TGAGGATCTTATGACCTACTTTAGAGGAAGGTATA  369

Query   44  ATT-------ATCAGACACTG-----------AAGG-------------CT------GAACAC----ACAAGGT  76
            |||       .|.|||..|||           ||||             ||      |||.||    |||  ||
Sbjct  370  ATTTGGCTTCCTGAGATTCTGCCTTAGCAAGAAAGGAGTGGGAAATACCCTTGGAAAGAAAACTAAAACA--GT  441

Query   77  TGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAA  150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  442  TGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAA  515

Query  151  CTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCA  224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516  CTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCA  589

Query  225  GATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAAC  298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  590  GATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAAC  663

Query  299  GTTTTAGGAATCTAGATGA-------------------------------------------------------  317
            |||||||||||||||||||                                                       
Sbjct  664  GTTTTAGGAATCTAGATGAAAATGGAAGTTGCATGAGAGGAGGAACCTTTACCTGTTTTGTTCATTGTTATATT  737

Query  318  -----------------------------AGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGA  362
                                         |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  738  CCAAGTTCCTAGAACAGATTTTGGTATACAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGA  811

Query  363  ACATACATTTCTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAA  436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  812  ACATACATTTCTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAA  885

Query  437  AATATGAATCAGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTC  510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  886  AATATGAATCAGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTC  959

Query  511  ACAAAAGACAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGA  584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  960  ACAAAAGACAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGA  1033

Query  585  GGCTGAAGTAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGG  658
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034  GGCTGAAGTAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGG  1107

Query  659  TGCGGCAGTTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCA  732
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108  TGCGGCAGTTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCA  1181

Query  733  GAACGCTTGGAAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGA  806
            |||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182  GAACGTTTGGAAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGA  1255

Query  807  ACGAGAAATAAATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCA  880
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256  ACGAGAAATAAATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCA  1329

Query  881  AACTGGAGACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGG--AT  952
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct 1330  AACTGGAGACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGTAAT  1403

Query  953  TACAGTCAGACAATGAAATT-------------CTCAAAGCAGCTGTTGAACATCACAAAGTG--CTC---TTA  1008
                        |||..|||             ||    ||.||||.|.|...|||.|.| ||  |||   |||
Sbjct 1404  ------------ATGTGATTTCCCTTGCTGCTGCT----GCTGCTGCTTATTTTCAGATA-TGAACTCAAATTA  1460

Query 1009  GTAGAAAA---GGATCGTGAATT----------AAT-----ACGTAA-----------------AGTACA----  1043
            .||.||.|   |.||| ||||||          |||     ||.|||                 ||||||    
Sbjct 1461  TTAAAATAGTTGAATC-TGAATTTTTATTTCCAAATTTTCAACTTAATTTAGTTTTAATTTTGGAGTACATATG  1533

Query 1044  -------------------AGCTG------CCA----AAG----AAGAAGGTTATCAAAAA------CTTGTGG  1078
                               || ||      .||    |||    ||.||..|||  |||||      |||.||.
Sbjct 1534  AAATGTTTATTATATGTTGAG-TGTTTTGTTCATTGTAAGATTTAATAACTTTA--AAAAAATCAGTCTTATGT  1604

Query 1079  TATTA-CA----------------AGATGAA----------------------------------AAGTTAGAA  1101
            |.||| ||                |.|||||                                  ||.||..||
Sbjct 1605  TTTTATCATAGTTATTGGATACATAAATGAATTTTGTAAATGGGATGCCATACTTCCTGATTTATAAATTTTAA  1678

Query 1102  CTC--------GAGAACAGATTAG---CAG---ATT-------TGGAGAAAATGAAAGTGGAACATGATGTCTG  1154
            .||        |.|.|...|||||   |||   |||       |||||||..|||    ||||.||.||   ||
Sbjct 1679  ATCTATTTATGGTGTAGTTATTAGTCCCAGGACATTTTAAGTCTGGAGAATGTGA----GGAAGATAAT---TG  1745

Query 1155  G-----AGG------------CAATCTGAAAAG-------------------------GATCA--GTA------  1178
            |     |||            |||| |.|||||                         |.|||  |||      
Sbjct 1746  GGTTCCAGGCTTAATTTTTTTCAAT-TAAAAAGATTTTTTTATGTAGACCTCAGGCCAGTTCATTGTAGCCTAG  1818

Query 1179  TGAAGAGAA-----ATT------------------------------------------------------GCG  1193
            ||.||||.|     |||                                                      .|.
Sbjct 1819  TGCAGAGTAGGCTTATTTATTTATTTTTTATTTTTATTTTTTATTTTTGAGATGGAGTCTCGCTCTGTCCCCCT  1892

Query 1194  GGCTTCA---CAGATGGCAGAAGAGATCAC------CAGGAAG--GAGCTTCAGAGTGTT-AGG---TTAAAAC  1252
            ||||..|   ||| ||||    |.||||.|      |.|||||  ..||.||..|| ||| |.|   ||    |
Sbjct 1893  GGCTGGAGTGCAG-TGGC----GTGATCTCGGCTCACTGGAAGCTCTGCCTCCCAG-GTTCACGCCATT----C  1956

Query 1253  T------TCAGC--AACAAAT---TGTGACTA------------------------------TTGAA-----AA  1280
            |      |||||  ..|||||   ||.|||||                              |||.|     ||
Sbjct 1957  TCCTGCCTCAGCCTCCCAAATAGCTGGGACTACAGGCGCCCACCACCAGGCTGGCTATTTTTTTGTATTTTTAA  2030

Query 1281  TGCAGAGA---------------------AGGAAAAAAATG-----AAAATTCTGACCT---------------  1313
             |.|||||                     |||      |||     .|..|.|||||||               
Sbjct 2031  -GTAGAGACAGCGTTTCACCGTGTTAGCCAGG------ATGGTCTTGATCTCCTGACCTCGTGATCTGCCTGCC  2097

Query 1314  ----------AAA-----------ACAG--------------CAAATCAGTAG------TTTGCAGATCCAAGT  1346
                      |||           ||||              ||....|||||      |||..||.||| |||
Sbjct 2098  TCGGCCTCCCAAAGTACTGGGATTACAGGCATGAGCCACGCCCAGCCGAGTAGGCTTATTTTTAAGTTCC-AGT  2170

Query 1347  GACTTCA-CTTG----------CACAGTCAGA------------GAATG---------ACTTGCTGAATTCAAA  1388
               ||.| ||||          |.|| |||||            ..|||         |||||..|.|||.|||
Sbjct 2171  ---TTAATCTTGGAACATCTGTCTCA-TCAGATTTCCTCATTATTTATGTTGTTTCTAACTTGAAGTATTTAAA  2240

Query 1389  CCAA---------------------ATGCTGAAG--GAAATG--GTGG--------------AGAGATTAAAAC  1423
             .||                     |||||..||  ||..||  ||.|              ||||.||  |..
Sbjct 2241  -TAAGCTTACCTTTGGCCTGTAGCTATGCTTGAGTTGATCTGTAGTTGAACTCATTTCAGACAGAGTTT--ATG  2311

Query 1424  AAGAATGCC-----------GAAAT------------TTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAA----  1470
            |.|||||||           |||||            |.|.|  .|||.|||     |||    ||.|||    
Sbjct 2312  ATGAATGCCTTTCATGTTTTGAAATGGGGTCTCACCATGTTG--CCCAGGCT-----AGC----CTTGAACTCC  2374

Query 1471  ---GCTGAAAAGACATTGG-----------AAG-------AGAA---------ACAG------ATACAGTGGTT  1508
               |||.|||      |||           |||       ||.|         ||||      |.||.|||..|
Sbjct 2375  TGGGCTCAAA------TGGTCCTCCTGCCTAAGCCTCCTCAGTAGCTGGGACTACAGGTGCTAACACCGTGTCT  2442

Query 1509  GG-----AAGAA-----------AA--GCATAA------------GCTTCATGAGCG-TATCACAGACAG---A  1548
            ||     |.|||           ||  | .|||            |..|||||   | |.|| ||.|.||   |
Sbjct 2443  GGCTGCTATGAATGATTTTTTCCAATTG-TTAATTTCTATTTATTGACTCATG---GATTTC-CATAGAGTTAA  2511

Query 1549  GAAGAAAAGT---------------ACAAT----CA----------------AGCTA-AGGAGAAACTGC---A  1583
            ||||.|||.|               |.|||    ||                ||.|| |.|.|||..|||   |
Sbjct 2512  GAAGTAAATTTTTTTAGGAACTTAAAGAATGCTGCATTTTGTTTTCACTTTGAGTTAGATGTGAATTTGCTTTA  2585

Query 1584  G-----CGAGCTGCAA-----TTGCC----CA--GAAAA-------------AGCTTGAACAGGATCTTGAGTT  1628
            |     |.|.||||||     |||||    ||  |.|||             |  |||.|||  |.|||||   
Sbjct 2586  GTTATTCCATCTGCAAAGTATTTGCCATTTCATTGCAAAGATTTCTGAATTCA--TTGTACA--AACTTGA---  2652

Query 1629  GGGA--TGCCCTTCTGTGACTGATACATACAG--AGAGAGTGT----ATTCCCCCCACCCCCATTG-AAGAGAG  1693
               |  ||.||  .|||.|.|.|||| |.|.|  ||||| |.|    ||||             || .|||   
Sbjct 2653  ---AAGTGTCC--ATGTTATTTATAC-TTCTGCTAGAGA-TCTAGCAATTC-------------TGCTAGA---  2703

Query 1694  ATC------TCTTGAAG---------------------------------------------------------  1704
            |||      |.||||||                                                         
Sbjct 2704  ATCAATAGGTTTTGAAGGGTTTTGTGATTTATTTCACTCTGCTATCAGCCAGCTTTTTCTATGAGGCTTAGGTC  2777

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 2778  ACAGAACCTCTTTAGAGGTGAAGTAAGTAAACCTCTGGTTATCATCCAGTTTGATCTCAACTCTCAATGTTCGA  2851

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 2852  ATGAGTAAATGTATACAGCTTTTATTAAAGTTTTTATATGTGTATGCACTAAATAAACAGTGACAGGAAAATTT  2925

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