Nucleotide Global Alignment

Description

• Query: ccsbBroad304_12035
• Subject: NM_170601.5
• Aligned Length: 1578
• Identities: 528
• Gaps: 1020

Alignment

Query    1  ATGGTCGCGCCGGGGCTTGTACTCGGGCTGGTGCTGCCATTAATCCTGTGGGCCGACAGAAGTGCAGGTATTGG  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGTCGCGCCGGGGCTTGTACTCGGGCTGGTGCTGCCATTAATCCTGTGGGCCGACAGAAGTGCAGGTATTGG  74

Query   75  TTTTCGCTTTGCTTCATACATCAATAATGATATGGTGCTGCAGAAGGAGCCTGCTGGGGCAGTGATATGGGGCT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TTTTCGCTTTGCTTCATACATCAATAATGATATGGTGCTGCAGAAGGAGCCTGCTGGGGCAGTGATATGGGGCT  148

Query  149  TCGGTACACCTGGAGCCACAGTGACCGTGACCCTGCGCCAAGGTCAGGAAACCATCATGAAGAAAGTGACCAGT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TCGGTACACCTGGAGCCACAGTGACCGTGACCCTGCGCCAAGGTCAGGAAACCATCATGAAGAAAGTGACCAGT  222

Query  223  GTGAAAGCTCACTCTGATACGTGGATGGTGGTACTGGATCCTATGAAGCCTGGAGGACCTTTCGAAGTGATGGC  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GTGAAAGCTCACTCTGATACGTGGATGGTGGTACTGGATCCTATGAAGCCTGGAGGACCTTTCGAAGTGATGGC  296

Query  297  ACAACAGACTTTGGAGAAAATAAACTTCACCCTGAGAGTTCATGACGTCCTGTTTGGAGATGTCTGGCTCTGTA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACAACAGACTTTGGAGAAAATAAACTTCACCCTGAGAGTTCATGACGTCCTGTTTGGAGATGTCTGGCTCTGTA  370

Query  371  GTGGGCAGAGTAACATGCAGATGACTGTGTTACAGGTAATT--------------------------TGCAG--  416
            |||||||||||||||||||||||||||||||||||.||.||                          |||.|  
Sbjct  371  GTGGGCAGAGTAACATGCAGATGACTGTGTTACAGATATTTAATGCTACAAGGGAGTTGTCTAACACTGCGGCA  444

Query  417  ----AGTC--TCAGCAAT---------------AATACA--CAG-------------------TGTTGGTGATG  448
                ||||  ||.|| ||               .||.||  |||                   |||||..|.||
Sbjct  445  TATCAGTCTGTCCGC-ATCCTCTCTGTCTCTCCCATTCAAGCAGAGCAGGAGCTGGAGGACCTTGTTGCGGTTG  517

Query  449  A-----AG------AAG---------GAAAA-GAAGG--AGGAATAAGGGGGCAACAAGGAGA----AGCAG--  493
            |     ||      |||         ||||| ..|||  |.|.|||      ...||||.|.|    |||||  
Sbjct  518  ACTTGCAGTGGTCTAAGCCCACCTCAGAAAACTTAGGCCATGGATA------TTTCAAGTACATGTCAGCAGTG  585

Query  494  ----GGCTGTTTCTA-------TTTAGTG---------AGTA--CCAT--------------------------  519
                ||||.|||..|       |||| ||         ||||  ||||                          
Sbjct  586  TGCTGGCTCTTTGGACGTCACCTTTA-TGACACTCTGCAGTATCCCATCGGGCTGATCGCCTCCAGCTGGGGCG  658

Query  520  ------------GAGCC----------------------AAG-------------------------------A  528
                        .||||                      |||                               |
Sbjct  659  GGACACCCATTGAAGCCTGGTCATCTGGACGGTCACTGAAAGCCTGTGGGGTCCCTAAACAAGGGTCCATTCCA  732

Query  529  TA------------------------------TGTTCT---AAATGCTTTGAATGAATTCATT----AATTTGA  565
            ||                              ||||||   .|||||..|| ||..||.||.|    |||.|||
Sbjct  733  TACGATTCTGTAACTGGTCCCAGTAAGCACTCTGTTCTCTGGAATGCCATG-ATCCATCCACTGTGCAATATGA  805

Query  566  CT------------------------------------------------------------------------  567
            ||                                                                        
Sbjct  806  CTCTGAAAGGGGTAGTATGGTACCAGGGGGAGTCCAATATAAATTATAACACGGATCTGTACAATTGCACATTC  879

Query  568  --------------------------------------------------------------------------  567
                                                                                      
Sbjct  880  CCTGCACTCATCGAAGACTGGCGTGAAACCTTCCACCGTGGTTCCCAGGGGCAGACGGAGCGTTTCTTCCCATT  953

Query  568  --------------------------------------------------------------------------  567
                                                                                      
Sbjct  954  TGGACTTGTCCAGTTATCTTCAGATTTGTCTAAGAAGAGCTCAGACGATGGATTTCCCCAGATCCGTTGGCATC  1027

Query  568  --------------------------------------------------------------------------  567
                                                                                      
Sbjct 1028  AAACAGCAGACTTCGGCTATGTCCCCAACCCAAAGATGCCCAATACTTTCATGGCTGTAGCTATGGATCTCTGT  1101

Query  568  --------------------------------------------------------------------------  567
                                                                                      
Sbjct 1102  GATAGAGACTCGCCTTTTGGCAGCATCCACCCTCGAGATAAACAGACTGTGGCTTATCGGCTGCATTTGGGGGC  1175

Query  568  --------------------------------------------------------------------------  567
                                                                                      
Sbjct 1176  CCGTGCTCTGGCTTATGGTGAGAAGAATTTGACCTTTGAAGGACCACTGCCTGAGAAGATAGAACTCTTGGCTC  1249

Query  568  --------------------------------------------------------------------------  567
                                                                                      
Sbjct 1250  ACAAGGGGCTGCTCAATCTCACATATTACCAGCAAATCCAGGTGCAGAAAAAGGACAACAAGATATTTGAGATC  1323

Query  568  --------------------------------------------------------------------------  567
                                                                                      
Sbjct 1324  TCCTGTTGCAGTGACCATCGATGCAAGTGGCTTCCAGCTTCTATGAACACCGTCTCCACCCAGTCCCTGACCCT  1397

Query  568  --------------------------------------------------------------------------  567
                                                                                      
Sbjct 1398  GGCGATCGATTCTTGTCATGGCACTGTGGTTGCTCTCCGCTATGCTTGGACCACGTGGCCTTGTGAATATAAGC  1471

Query  568  --------------------------------------------------------------------------  567
                                                                                      
Sbjct 1472  AGTGTCCCCTATACCACCCCAGTAGTGCCCTGCCAGCCCCTCCCTTCATTGCTTTCATTACAGACCAGGGTCCT  1545

Query  568  ------------------------  567
                                    
Sbjct 1546  GGACATCAGAGCAATGTTGCTAAA  1569