Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12167
- Subject:
- XM_011246728.1
- Aligned Length:
- 3019
- Identities:
- 1597
- Gaps:
- 1193
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCCCTCATTGCGCAAAAGAGTGAAAATACAGGCCGAGAATGCAGAACCCAAAGATGAATGCTCTTTCTTCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGAGTTGTCATCTGGCTCTGAAGAAGATAACAAGGAAGACAGCATTTGGGAACCTCAGAAGAAAGTTCCCAGAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCGTAGACAGCCTGCTTCCAAGGGATCCAAACGGAAGCAGGGGCCCAGGGCGAAGAAGAGCTCCCAACAGGTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GATGACGAATCAAAAGATGTGGCTGTTAAGGAGGAGTTGAACAGCCCGGTGGCTATTGTTGATGCAGATTTGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGAGAAAAGCCACAAGTTGCAGACGACAAAGACTCTTAAAACTGCAGCAAAAAAGCAAAAAAAACCAGTTCCGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGGCCAAAAAAAGGTTGAAAGTTGATGAGGAAACCAGCCAGGCCAGCCCCTTGGAGGGTGGAGGCAGTAATGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAGACCCCCTCAACAAGCGCCTGTGGAAATGTGTGCAAGAAGGAGGAGAGCGAGGACAGCTTCACGTTTGGGCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTCCCCGGTAAAGAGGATCAGGACTGAGTCATGTCCTCAGGGGAGGCCGGCCAGGGTTCCCGACGGTGTCAGCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ACATTAAAGAGGAGGTAGAAATGAACTGGGACGTAGTACAGGTTTTATCTGAGAGAACTAATATTGAACCTTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTTTGTGCCAACATCATACGCCTCTTTAATGATGACAACACAATCCCCTTCATTGTACGCTATCGAAAAGAGCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CATTAATAACCTTGATGCTGATTTCTTAAGAGAAGTTCGTCAAACCCTAGATGAGCTACGGGATGTTGCCAAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGGTTCATAGTAGAATCCAGAAAATTAAGAAGGAGGGGAAAATGTCGGAGTGCTTGCTGCAAGCCTTGTTGAAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGTAAAACGTTCGAGGAACTAGAGCATGTGTCTGCTCCATATAAAATGGGGAGCAAGGGCACGAAAGCCCAGAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGCAAAACAGTTGGGGCTAGAAGGAGCAGCGTGGACCCTGCTGGAGAACCCGGGGCAGCTCAACCTGCTGTCTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACATCAAGCCTGATGTTAAAGGCCTTTCTGAGCTCAACGATATCGAAACAGGAGTACAACATATTTTAGCAGAC 1110
Query 1 ATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGGAACTTGTGCCAGAAGAGACATGTTTGTATCCAGTC 74
||||||||||||||||||||.|||||||||||.||||||..||||||..|..|.|||.|..|||||||||||||
Sbjct 1111 ATGATTGCTAAAGACAAAGATACGCTTGACTTTATTCGGGGCTTGTGTAAACATAGATACATTTGTATCCAGTC 1184
Query 75 ATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAGTTTCTGCTCTACCAGCATTTTT 148
||||||.||||||||||||||||||||.|||||||||||.||.|||||||||||||.|||.||||||.||||.|
Sbjct 1185 ATCTCTTGCAAAAGTATCCTCAAAAAAAGTAAATGAGAAGGAAGTTGATAAGTTTCAGCTTTACCAGAATTTCT 1258
Query 149 CCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGGAGAAAATTTGAAGGTACTGACG 222
|||||||||||||.|.|||.||||||||.|||||||||||.||||||||.|||||.|||||||||.|.|||||.
Sbjct 1259 CCTGCAACATAAGGACCATCCACCATCACCAGATTCTGGCCATTAACCGAGGAGAGAATTTGAAGATCCTGACC 1332
Query 223 GTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCATCCAAAACAGGTGGAGACCACG 296
||.||.|||||.||||||||||||||.|||.|.|||||||||.|.|||||.||.||.|||||||||||.|||||
Sbjct 1333 GTCAAAGTCAACATTTCTGATGGAGTAAAGAACGAATTCTGTCGATGGTGTATACAGAACAGGTGGAGGCCACG 1406
Query 297 TAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAATGATTCCTTTAAACGCCTTATTTATC 370
|.||||||||.||||||||||.||||||||||||.|||||||||||.||||.||||||||.|||||.|||..||
Sbjct 1407 TGGCTTTGCACGGCCAGAGTTGATGAAGATCTTACATAATTCACTGGATGACTCCTTTAAGCGCCTCATTGTTC 1480
Query 371 CTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAGAGAAGGAATCAGTAATGATGTTTGGACGG 444
||||.|||||||||||.||||||||||||||.||||||||||||||||||.|||||||||||||||||||||.|
Sbjct 1481 CTCTCCTCTGTAGAGAGTTCAGAGCCAAACTGACATCAGATGCAGAGAAGCAATCAGTAATGATGTTTGGACAG 1554
Query 445 AACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCGCACCTTAATGGGAGTGGATCCTGGTTATAAACA 518
|||||.||.|||||||||||||||||.|||||.|||||.||||||.|.||||||||.||||||||.||.|||||
Sbjct 1555 AACCTCCGCCAGCTCCTTTTAACAAGTCCTGTGCCAGGCCGCACCCTGATGGGAGTAGATCCTGGCTACAAACA 1628
Query 519 TGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAGATACTTCATACTGATGTGGTTTACTTGCATTGTGGAC 592
|||.||||||.||||.||.||||||||||||||||||||.|||||.||.|||||||||||||||||.|||||||
Sbjct 1629 TGGATGCAAACTAGCCATCATTTCTCCTACTAGTCAGATCCTTCACACGGATGTGGTTTACTTGCACTGTGGAC 1702
Query 593 AAGGCTTCCGAGAGGCGGAGAAAATAAAGACACTTTTGCTGAATTTCAACTGCAGCACAGTAGTGATTGGAAAT 666
||||||||||||||||.|||||.||.||||..|||||||||.|||||||||||||.|||||.|||||.||||||
Sbjct 1703 AAGGCTTCCGAGAGGCCGAGAAGATCAAGAGGCTTTTGCTGCATTTCAACTGCAGAACAGTGGTGATCGGAAAT 1776
Query 667 GGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGAATTATTTTGCACCACTGGATGT 740
||||||||||||.|||||||.|||||.|||||||||||||||||||||||.|||||.|||||||||||||||||
Sbjct 1777 GGAACTGCCTGCCGGGAAACTGAAGCCTACTTTGCTGACCTGATAATGAAAAATTACTTTGCACCACTGGATGT 1850
Query 741 TGTTTACTGTATCGTCAGTGAAGCAGGAGCATCAATCTACAGTGTCAGCCCTGAAGCTAACAAAGAGATGCCAG 814
.||||||||.|||||||||||||||||.||.||.|||||||||||||||||.|||||.|||||.||||||||||
Sbjct 1851 CGTTTACTGCATCGTCAGTGAAGCAGGGGCCTCCATCTACAGTGTCAGCCCCGAAGCGAACAAGGAGATGCCAG 1924
Query 815 GGCTGGACCCTAATTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTACAAGATCCATTAGCTGAGCTAGTGAAA 888
|.|||||||||||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 1925 GACTGGACCCTAACTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTTCAAGATCCATTAGCTGAGCTAGTGAAA 1998
Query 889 ATTGAGCCAAAGCACATTGGAGTTGGAATGTATCAGCATGACGTATCCCAGACTTTACTCAAGGCAACACTGGA 962
.||||.||.||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||||
Sbjct 1999 TTTGACCCGAAGCACATTGGAGTTGGAATGTATCAGCATGATGTATCCCAGACATTACTCAAGGCAACACTGGA 2072
Query 963 CAGTGTTGTAGAAGAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGTTCAGAAGTTTTGTTAAGGCATA 1036
||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||||
Sbjct 2073 CAGTGTTGTAGAAGAATGTGTCAGCTTTGTGGGAGTGGATATTAACATTTGTTCTGAGGTTTTGTTAAGGCATA 2146
Query 1037 TTGCAGGACTCAATGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAAAAATGGACCCTTT-ATCAACCG 1109
|||||||||||||||||||.||.|||||||||||||||||.||||||||||||||||| |||||| ||.|||||
Sbjct 2147 TTGCAGGACTCAATGCCAATAGAGCCAAAAATATTATTGAGTGGCGAGAGAAAAATGG-CCCTTTCATTAACCG 2219
Query 1110 AGAACAGCTGAAGAAAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTGCTGGCTTCATCAGAATCAACC 1183
|||||||.|||||||.|||||||||||.||.||||||||||||||.|||||||||||||||.||||.|||||||
Sbjct 2220 AGAACAGTTGAAGAAGGTGAAAGGGCTTGGTCCAAAATCCTTCCAGCAGTGTGCTGGCTTCGTCAGGATCAACC 2293
Query 1184 AGGATTATATCCGAACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATTCAAGGAGTTGCTGTGACATCT 1257
|||||||.|||||.||.||.||||||||.||.|||||..||||||||||.|..||.|.|..||| |||
Sbjct 2294 AGGATTACATCCGGACATTCTGCAGTCAACACACTGACTCTTCAGGCCAGAGCCAGGAAACTGC-----CAT-- 2360
Query 1258 TCAGCAGACGTTGAGGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAACTGCAGTGAATGTTTTACTGAA 1331
|||||||||||||||||.||||||||||||||.|||| |||| |||.....||.|.
Sbjct 2361 --------------GGTCACAAATGAGAAGCTGGGCAAAAAGAAGAACAAA---GCAG---ATGCCACCCTCAT 2414
Query 1332 GCCAAATCCTTTGGACCAAACTTGTATTCATCCAGAATCATATGACATAGCAATGA------------------ 1387
.|||||.||..|||||||.|||||.||.|||||.|||||.||||||||||||.|.|
Sbjct 2415 ACCAAACCCACTGGACCAGACTTGCATCCATCCGGAATCCTATGACATAGCAGTCAGTAAAAGAGACACTAATT 2488
Query 1388 ------------------------GGTTTTTGTCATCCATTGGAGGGACACTGTATGAGGTTGGAAAGCCTGAA 1437
|||||||.||.|.||||||.||||||.|||.||||.||||||||||||||
Sbjct 2489 TCTGGAGCCTCTACATTCTATACTGGTTTTTATCGTTCATTGGGGGGACAATGTGTGAGATTGGAAAGCCTGAA 2562
Query 1438 ATGCAACAAAAAATAAATTCAT-TC-CTTGAAAAGGAAGGAATGGAGAAAATTGCAGAAAGATTGCAAACAACA 1509
|||||.||.|||||||| |.| || ||.|..||.|||||.||.|||.|||.|||.|||||.||.||.|||||.
Sbjct 2563 ATGCAGCAGAAAATAAA--CGTGTCTCTCGGGAAAGAAGGCATAGAGGAAACTGCTGAAAGGTTACAGACAACT 2634
Query 1510 GTACACACCTTACAGGTCATCATAGATGGTCTCAGCCAGCCTGAAAGCTTTGACTTTCGAACAGATTTTGATAA 1583
||.|||||..|.|||||||||||||||||.||.||||||||..|||.|||||||.|.|||||||||||||||||
Sbjct 2635 GTGCACACACTGCAGGTCATCATAGATGGACTGAGCCAGCCCAAAACCTTTGACATCCGAACAGATTTTGATAA 2708
Query 1584 ACCTGATTTCAAGAGAAGCATAGTATGCCTGGAAGATCTGCAGATTGGGACAGTTCTTACAGGCAAAGTTGAGA 1657
.|||||.|||||||||||||||||.||.||||||||.||||||.|||||||||||||||||||||||||.||||
Sbjct 2709 GCCTGACTTCAAGAGAAGCATAGTGTGTCTGGAAGACCTGCAGGTTGGGACAGTTCTTACAGGCAAAGTGGAGA 2782
Query 1658 ATGCCACTCTCTTTGGAATTTTTGTGGATATAGGAGTGGGGAAATCTGGGCTGATTCCCATACGAAATG----T 1727
||||.|||||.|||||..|.|||||||||||||||||||||||..|.|||||||||||.||.|| | |
Sbjct 2783 ATGCTACTCTGTTTGGGGTCTTTGTGGATATAGGAGTGGGGAAGGCGGGGCTGATTCCTATCCG----GTTCAT 2852
Query 1728 AACAGAAGCAAAACTTTCAAAAACAAAGAAGAGAAGAAGCCTTGGACTGGGCCCCGGAGAAAGAGTGGAAGTCC 1801
|||||||||.||.||.||.||||||||||.||||||||||||.||.||||||||||||||.|.||||||.||..
Sbjct 2853 AACAGAAGCCAAGCTGTCCAAAACAAAGAGGAGAAGAAGCCTGGGCCTGGGCCCCGGAGAGAAAGTGGAGGTGA 2926
Query 1802 AAGTACTCAACATTGACATCCCCCGATCTAGGATTACTCTGGACCTCATTCGGGTGTTA 1860
||||.|||||..|.|||||.|||||||||.|||||.|.||.||||||.|.||||||||.
Sbjct 2927 AAGTCCTCAATGTCGACATTCCCCGATCTCGGATTTCGCTCGACCTCCTCCGGGTGTTG 2985
