Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12167
- Subject:
- XR_385394.3
- Aligned Length:
- 3604
- Identities:
- 1212
- Gaps:
- 2214
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAGTAAGGCGGGACTTCCGGCGTTTGAAAAACTTCCGGCGGGAACCGGAAGATTCCTCAGCAGAACTCTCTTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCAGATTCGCCAAGCCCGAAGATGCCCTCATTGCGCAAAAGAGTGAAAATACAGGCCGAGAATGCAGAACCCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGATGAATGCTCTTTCTTCTCTGAGTTGTCATCTGGCTCTGAAGAAGATAACAAGGAAGACAGCATTTGGGAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTCAGAAGAAAGTTCCCAGAAATCGTAGACAGCCTGCTTCCAAGGGATCCAAACGGAAGCAGGGGCCCAGGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAAGAAGAGCTCCCAACAGGTGGATGACGAATCAAAAGATGTGGCTGTTAAGGAGGAGTTGAACAGCCCGGTGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTATTGTTGATGCAGATTTGGAAGAGAAAAGCCACAAGTTGCAGACGACAAAGACTCTTAAAACTGCAGCAAAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAGCAAAAAAAACCAGTTCCGAGGGCCAAAAAAAGGTTGAAAGTTGATGAGGAAACCAGCCAGGCCAGCCCCTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGAGGGTGGAGGCAGTAATGTGGAGACCCCCTCAACAAGCGCCTGTGGAAATGTGTGCAAGAAGGAGGAGAGCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGGACAGCTTCACGTTTGGGCAGTCCCCGGTAAAGAGGATCAGGACTGAGTCATGTCCTCAGGGGAGGCCGGCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGGGTTCCCGACGGTGTCAGCGACATTAAAGAGGAGGTAGAAATGAACTGGGACGTAGTACAGGTTTTATCTGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGAACTAATATTGAACCTTGGGTTTGTGCCAACATCATACGCCTCTTTAATGATGACAACACAATCCCCTTCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTGTACGCTATCGAAAAGAGCTCATTAATAACCTTGATGCTGATTTCTTAAGAGAAGTTCGTCAAACCCTAGAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAGCTACGGGATGTTGCCAAGAAGGTTCATAGTAGAATCCAGAAAATTAAGAAGGAGGGGAAAATGTCGGAGTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTGCTGCAAGCCTTGTTGAACTGTAAAACGTTCGAGGAACTAGAGCATGTGTCTGCTCCATATAAAATGGGGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCAAGGGCACGAAAGCCCAGAGAGCAAAACAGTTGGGGCTAGAAGGAGCAGCGTGGACCCTGCTGGAGAACCCG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGGCAGCTCAACCTGCTGTCTTACATCAAGCCTGATGTTAAAGGCCTTTCTGAGCTCAACGATATCGAAACAGG 1184
Query 1 ----------------------ATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGGAACTTGTGCCAGA 52
||||||||||||||||||||.|||||||||||.||||||..||||||..|..
Sbjct 1185 AGTACAACATATTTTAGCAGACATGATTGCTAAAGACAAAGATACGCTTGACTTTATTCGGGGCTTGTGTAAAC 1258
Query 53 AGAGACATGTTTGTATCCAGTCATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAG 126
|.|||.|..|||||||||||||||||||.||||||||||||||||||||.|||||||||||.||.|||||||||
Sbjct 1259 ATAGATACATTTGTATCCAGTCATCTCTTGCAAAAGTATCCTCAAAAAAAGTAAATGAGAAGGAAGTTGATAAG 1332
Query 127 TTTCTGCTCTACCAGCATTTTTCCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGG 200
||||.|||.||||||.||||.||||||||||||||.|.|||.||||||||.|||||||||||.||||||||.||
Sbjct 1333 TTTCAGCTTTACCAGAATTTCTCCTGCAACATAAGGACCATCCACCATCACCAGATTCTGGCCATTAACCGAGG 1406
Query 201 AGAAAATTTGAAGGTACTGACGGTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCA 274
|||.|||||||||.|.|||||.||.||.|||||.||||||||||||||.|||.|.|||||||||.|.|||||.|
Sbjct 1407 AGAGAATTTGAAGATCCTGACCGTCAAAGTCAACATTTCTGATGGAGTAAAGAACGAATTCTGTCGATGGTGTA 1480
Query 275 TCCAAAACAGGTGGAGACCACGTAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAATGAT 348
|.||.|||||||||||.||||||.||||||||.||||||||||.||||||||||||.|||||||||||.||||.
Sbjct 1481 TACAGAACAGGTGGAGGCCACGTGGCTTTGCACGGCCAGAGTTGATGAAGATCTTACATAATTCACTGGATGAC 1554
Query 349 TCCTTTAAACGCCTTATTTATCCTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAGAGAAGGA 422
||||||||.|||||.|||..||||||.|||||||||||.||||||||||||||.||||||||||||||||||.|
Sbjct 1555 TCCTTTAAGCGCCTCATTGTTCCTCTCCTCTGTAGAGAGTTCAGAGCCAAACTGACATCAGATGCAGAGAAGCA 1628
Query 423 ATCAGTAATGATGTTTGGACGGAACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCGCACCTTAATGG 496
||||||||||||||||||||.||||||.||.|||||||||||||||||.|||||.|||||.||||||.|.||||
Sbjct 1629 ATCAGTAATGATGTTTGGACAGAACCTCCGCCAGCTCCTTTTAACAAGTCCTGTGCCAGGCCGCACCCTGATGG 1702
Query 497 GAGTGGATCCTGGTTATAAACATGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAGATACTTCATACTGAT 570
||||.||||||||.||.||||||||.||||||.||||.||.||||||||||||||||||||.|||||.||.|||
Sbjct 1703 GAGTAGATCCTGGCTACAAACATGGATGCAAACTAGCCATCATTTCTCCTACTAGTCAGATCCTTCACACGGAT 1776
Query 571 GTGGTTTACTTGCATTGTGGACAAGGCTTCCGAGAGGCGGAGAAAATAAAGACACTTTTGCTGAATTTCAACTG 644
||||||||||||||.|||||||||||||||||||||||.|||||.||.||||..|||||||||.||||||||||
Sbjct 1777 GTGGTTTACTTGCACTGTGGACAAGGCTTCCGAGAGGCCGAGAAGATCAAGAGGCTTTTGCTGCATTTCAACTG 1850
Query 645 CAGCACAGTAGTGATTGGAAATGGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGA 718
|||.|||||.|||||.||||||||||||||||||.|||||||.|||||.|||||||||||||||||||||||.|
Sbjct 1851 CAGAACAGTGGTGATCGGAAATGGAACTGCCTGCCGGGAAACTGAAGCCTACTTTGCTGACCTGATAATGAAAA 1924
Query 719 ATTATTTTGCACCACTGGATGTTGTTTACTGTATCGTCAGTGAAGCAGGAGCATCAATCTACAGTGTCAGCCCT 792
||||.|||||||||||||||||.||||||||.|||||||||||||||||.||.||.|||||||||||||||||.
Sbjct 1925 ATTACTTTGCACCACTGGATGTCGTTTACTGCATCGTCAGTGAAGCAGGGGCCTCCATCTACAGTGTCAGCCCC 1998
Query 793 GAAGCTAACAAAGAGATGCCAGGGCTGGACCCTAATTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTACAAGA 866
|||||.|||||.|||||||||||.|||||||||||.||||||||||||||||||||||||||||||||.|||||
Sbjct 1999 GAAGCGAACAAGGAGATGCCAGGACTGGACCCTAACTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTTCAAGA 2072
Query 867 TCCATTAGCTGAGCTAGTGAAAATTGAGCCAAAGCACATTGGAGTTGGAATGTATCAGCATGACGTATCCCAGA 940
||||||||||||||||||||||.||||.||.|||||||||||||||||||||||||
Sbjct 2073 TCCATTAGCTGAGCTAGTGAAATTTGACCCGAAGCACATTGGAGTTGGAATGTATC------------------ 2128
Query 941 CTTTACTCAAGGCAACACTGGACAGTGTTGTAGAAGAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGT 1014
Sbjct 2129 -------------------------------------------------------------------------- 2128
Query 1015 TCAGAAGTTTTGTTAAGGCATATTGCAGGACTCAATGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAA 1088
Sbjct 2129 -------------------------------------------------------------------------- 2128
Query 1089 AAATGGACCCTTTATCAACCGAGAACAGCTGAAGAAAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTG 1162
Sbjct 2129 -------------------------------------------------------------------------- 2128
Query 1163 CTGGCTTCATCAGAATCAACCAGGATTATATCCGAACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATT 1236
Sbjct 2129 -------------------------------------------------------------------------- 2128
Query 1237 CAAGGAGTTGCTGTGACATCTTCAGCAGACGTTGAGGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAAC 1310
Sbjct 2129 -------------------------------------------------------------------------- 2128
Query 1311 TGCAGTGAATGTTTTACTGAAGCCAAATCCTTTGGACCAAACTTGTATTCATCCAGAATCATATGACATAGCAA 1384
Sbjct 2129 -------------------------------------------------------------------------- 2128
Query 1385 TGAGGTTTTTGTCATCCATTGGAGGGACACTGTATGAGGTTGGAAAGCCTGAAATGCAACAAAAAATAAATTCA 1458
||||||||.||.|.||||||.||||||.|||.||||.|||||||||||||||||||.||.|||||||| |.
Sbjct 2129 --AGGTTTTTATCGTTCATTGGGGGGACAATGTGTGAGATTGGAAAGCCTGAAATGCAGCAGAAAATAAA--CG 2198
Query 1459 T-TC-CTTGAAAAGGAAGGAATGGAGAAAATTGCAGAAAGATTGCAAACAACAGTACACACCTTACAGGTCATC 1530
| || ||.|..||.|||||.||.|||.|||.|||.|||||.||.||.|||||.||.|||||..|.|||||||||
Sbjct 2199 TGTCTCTCGGGAAAGAAGGCATAGAGGAAACTGCTGAAAGGTTACAGACAACTGTGCACACACTGCAGGTCATC 2272
Query 1531 ATAGATGGTCTCAGCCAGCCTGAAAGCTTTGACTTTCGAACAGATTTTGATAAACCTGATTTCAAGAGAAGCAT 1604
||||||||.||.||||||||..|||.|||||||.|.|||||||||||||||||.|||||.||||||||||||||
Sbjct 2273 ATAGATGGACTGAGCCAGCCCAAAACCTTTGACATCCGAACAGATTTTGATAAGCCTGACTTCAAGAGAAGCAT 2346
Query 1605 AGTATGCCTGGAAGATCTGCAGATTGGGACAGTTCTTACAGGCAAAGTTGAGAATGCCACTCTCTTTGGAATTT 1678
|||.||.||||||||.||||||.|||||||||||||||||||||||||.||||||||.|||||.|||||..|.|
Sbjct 2347 AGTGTGTCTGGAAGACCTGCAGGTTGGGACAGTTCTTACAGGCAAAGTGGAGAATGCTACTCTGTTTGGGGTCT 2420
Query 1679 TTGTGGATATAGGAGTGGGGAAATCTGGGCTGATTCCCATACGAAATG----TAACAGAAGCAAAACTTTCAAA 1748
||||||||||||||||||||||..|.|||||||||||.||.|| | ||||||||||.||.||.||.||
Sbjct 2421 TTGTGGATATAGGAGTGGGGAAGGCGGGGCTGATTCCTATCCG----GTTCATAACAGAAGCCAAGCTGTCCAA 2490
Query 1749 AACAAAGAAGAGAAGAAGCCTTGGACTGGGCCCCGGAGAAAGAGTGGAAGTCCAAGTACTCAACATTGACATCC 1822
||||||||.||||||||||||.||.||||||||||||||.|.||||||.||..||||.|||||..|.|||||.|
Sbjct 2491 AACAAAGAGGAGAAGAAGCCTGGGCCTGGGCCCCGGAGAGAAAGTGGAGGTGAAAGTCCTCAATGTCGACATTC 2564
Query 1823 CCCGATCTAGGATTACTCTGGACCTCATTCGGGTGTTA------------------------------------ 1860
||||||||.|||||.|.||.||||||.|.||||||||.
Sbjct 2565 CCCGATCTCGGATTTCGCTCGACCTCCTCCGGGTGTTGTGAGTGCCCCACCGAAGGCCAAACACCAATGTGTTC 2638
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 2639 CCTCACTTCTACAGCCTGACAAGGACGAGCCAGAGCTCATGGAACCTAGAGAGCGGGGGGGGGGGGGCTCCTGG 2712
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 2713 GTAGAAGTGTTCATCACACTATCCTGACTCCCACGGAAAGCAACAGGAGACCTCGCATGGTGTCCTACAGCAGC 2786
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 2787 AGTTTCTGTCTTTGTAATTCCTTGTTGACCACATACAGCAGGCAGCTTCACGTCCTCCCGCTAACATCTGCTGC 2860
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 2861 CTTAGACCTGGGTGGGATGTCTTGCTTATTTGAAATGTGTAGTGTTGATTGACACATTAAGACTAGCAGTCTTT 2934
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 2935 AATCCTGCCACTTTATTGAGGTGTTATTAGCACTTTTGTTCATAATTCATAATTTTGTAATAATCTTTATTTTC 3008
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 3009 CCTTAGCAAACCAAGTAAAAATAAACTAGTAAAAGATTATCATGTTTTATGACCATCAACGGAATCATTTTAAT 3082
Query 1861 ---------------------------------------------------- 1860
Sbjct 3083 GTGTTCCTCAGAACGTATGTATTGACTTCTACAATAAATGACTGGCTGGTGA 3134
