Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12211
- Subject:
- XR_002957027.1
- Aligned Length:
- 3299
- Identities:
- 1432
- Gaps:
- 1734
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGTGCCGGGCGCCCAGGGGTTGCCGCGCTGGGCGGGAGGGCAGCGCCTGAGAGGGCGGTGGGGTGGCGGGGTT 74
Query 1 -----------------------------------------------------ATGGGCATCTACCAGATGTAC 21
|||||||||||||||||||||
Sbjct 75 CCTGCGCGCGGCCCGCCATGGAGGTGGAGGAGGCGTTCCAGGCGGTGGGGGAGATGGGCATCTACCAGATGTAC 148
Query 22 TTGTGCTTCCTGCTGGCCGTGCTGCTGCAGCTCTACGTGGCCACGGAGGCCATCCTCATTGCACTGGTTGGGGC 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TTGTGCTTCCTGCTGGCCGTGCTGCTGCAGCTCTACGTGGCCACGGAGGCCATCCTCATTGCACTGGTTGGGGC 222
Query 96 CACGCCATCCTACCACTGGGACCTGGCAGAGCTCCTGCCAAATCAGAGCCACGGTAACCAGTCAGCTGGTGAAG 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CACGCCATCCTACCACTGGGACCTGGCAGAGCTCCTGCCAAATCAGAGCCACGGTAACCAGTCAGCTGGTGAAG 296
Query 170 ACCAGGCCTTTGGGGACTGGCTCCTGACAGCCAACGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAGCAGC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCAGGCCTTTGGGGACTGGCTCCTGACAGCCAACGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAGCAGC 370
Query 244 TTCACCTCCATCGCCTCGGAGTGGTTTTTAATTGCCAACAGATCCTACAAAGTCAGTGCAGCAAGCTCTTTTTT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTCACCTCCATCGCCTCGGAGTGGTTTTTAATTGCCAACAGATCCTACAAAGTCAGTGCAGCAAGCTCTTTTTT 444
Query 318 CTTCAGTGGTGTATTTGTTGGAGTTATCTCTTTTGGTCAGCTTTCAGATCGCTTCGGAAGGAAAAAAGTCTATC 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTTCAGTGGTGTATTTGTTGGAGTTATCTCTTTTGGTCAGCTTTCAGATCGCTTCGGAAGGAAAAAAGTCTATC 518
Query 392 TCACAGGTTTTGCTCTTGACATCTTATTTGCAATTGCAAATGGATTTTCCCCCTCATATGAGTTCTTTGCAGTA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCACAGGTTTTGCTCTTGACATCTTATTTGCAATTGCAAATGGATTTTCCCCCTCATATGAGTTCTTTGCAGTA 592
Query 466 ACTCGCTTCCTGGTGGGCATGATGAATGGAGGGATGTCGCTGGTGGCCTTTGTCTTGCTTAATGAGTGTGTGGG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 593 ACTCGCTTCCTGGTGGGCATGATGAATGGAGGGATGTCGCTGGTGGCCTTTGTCTTGCTTAATGAATGTGTGGG 666
Query 540 CACCGCCTACTGGGCACTTGCAGGATCGATTGGCGGCCTCTTCTTTGCAGTTGGCATTGCCCAATATGCCCTGT 613
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 667 CACCGCCTACTGGGCACTTGCAGGATCGATTGGCGGCCTGTTCTTTGCAGTTGGCATTGCCCAATATGCCCTGT 740
Query 614 TAGGATACTTCATCCGCTCCTGGAGGACCCTAGCCATTCTGGTTAACCTGCAGGGAACGGTGGTCTTTCTCTTA 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TAGGATACTTCATCCGCTCCTGGAGGACCCTAGCCATTCTGGTTAACCTGCAGGGAACGGTGGTCTTTCTCTTA 814
Query 688 TCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGACTGAGTGAGGCTGAAGAGGCGCTGTA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGACTGAGTGAGGCTGAAGAGGCGCTGTA 888
Query 762 CCTCATTGCCAAGAGGAACCGCAAACTCAAGTGCACGTTCTCACTAACACACCCAGCCAACAGGAGCTGCAGGG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCTCATTGCCAAGAGGAACCGCAAACTCAAGTGCACGTTCTCACTAACACACCCAGCCAACAGGAGCTGCAGGG 962
Query 836 AGACTGGAAGTTTCCTGGATCTCTTTCGTTACCGGGTCCTGTTAGGACACACTTTGATCCTGATGTTCAT---- 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGACTGGAAGTTTCCTGGATCTCTTTCGTTACCGGGTCCTGTTAGGACACACTTTGATCCTGATGTTCATCTGC 1036
Query 906 ---------------------CTGGTTT-----GTGTGCAGCTTGGTGTATT------------ATG-----GC 936
||||||| .||.|||||...||.| || ||| ||
Sbjct 1037 AAGTCTCCTGATCCTTAGCGCCTGGTTTTCTGCTTGCGCAGCCCCGTCT-TTCTCAAGTAGCAGATGATAGTGC 1109
Query 937 CTAA----------CTCTGAGTGCGGGT------------------GATCT---------AGGT-------GGA 966
||.| |.|||||...|.|| .|||| |||| ..|
Sbjct 1110 CTGATGGGCAGGTCCACTGAGCTTGAGTAAGTAGACATCAGAAGCACATCTTTGCTTTTGAGGTATTTATCATA 1183
Query 967 AGTATTTATGCCAACCTGGCCCTGT---CTG------------------------GCCTCATAGAGA------- 1006
|.||||||.|||..||||.|||| | ||| ||.|..||||.|
Sbjct 1184 AATATTTAAGCCTTCCTGCCCCT-TCCCCTGCAAAAAAGGAAAGAAAGCAAATAAGCATGGTAGAAATAGATGA 1256
Query 1007 ----TTCAAT---------------CTTACC------------------------------------------- 1018
||.||| ||||||
Sbjct 1257 GTTTTTAAATAGGACTTTAAAAATACTTACCTTTGGCACTGGCATCAAGCAGTTTGCTAGCACATTCTGATTGC 1330
Query 1019 ----CTC------------TCTGTATCTACT-----TGATTAA--------------CCAAAAATG-------- 1049
||| |||||..| ||| |.|.||| |.|||.|||
Sbjct 1331 GGTGCTCCATGCTGCATTTTCTGTGGC-ACTCCCACTCACTAACTCACTGAGGTGGGCTAAATATGATCCCTTG 1403
Query 1050 -------------------GTTTG--GT-------CGGAAGC---------------------GAACATTATCA 1074
||||| || |..|||| |||| |.||.|
Sbjct 1404 TACAGATGGGACCCCAGGAGTTTGAAGTGATGAACCCTAAGCCACATATGTAAATCAGTGATTGAAC-TGATGA 1476
Query 1075 GCA-TTTCTGTGCCTAGGAGGA-----CTGGCTTGT----CTTAT----------------------------- 1109
||| ||||||..||| || |||| |||| |||||
Sbjct 1477 GCACTTTCTGAACCT-----GATTTTTCTGG-TTGTTTAGCTTATTCCCACCTACCTTTCAAAATGCTCTCAGC 1544
Query 1110 -----TGTAATGTTTC---------TTCCAGA-----------AAAGAA---------AGACACAGGTG----- 1144
||||| |||.| |||.||| |||||| |||.|.|||.|
Sbjct 1545 GTGAGTGTAA-GTTGCATTCAGCGGTTCAAGATGGTTTCATTTAAAGAATGAAGTTGTAGAAAGAGGAGAAATG 1617
Query 1145 --TGTTTGCA--------GTGG--TGAACA-------------------------------GCCAT-------- 1167
||..|||| |||| ||.||| |||||
Sbjct 1618 GATGGGTGCATACAATTTGTGGATTGCACATGTGTTTTGATATTGTACATACTGCTAATGTGCCATAAGTGTTA 1691
Query 1168 ------------------TCCTTGTCCT------------TGCTGGG-------------------GAAGC--- 1189
|.||.| ||| |||||.| |||||
Sbjct 1692 TCTGGGCAAAATCATACCTACTAG-CCTAAAGGACAGTTGTGCTGTGGCTTATATGTATTTGCCATGAAGCCTG 1764
Query 1190 -----------------------------------------------------TGACCATCAGT-----GCTGC 1205
|||.|.|..|| |||.|
Sbjct 1765 CATGGAGCCCTACATTTCATGCAGGGATAAAGGAAAGTGATTTTATATGAAAGTGATCTTATGTATAAAGCTAC 1838
Query 1206 ------------CTTTA------------------ACATTGTT-TATATC-TA--------------------- 1226
||||| |.|||.|| |||||| ||
Sbjct 1839 AAAGAATAGTAGCTTTAGAATAAGAAGCTGCAAAGATATTTTTCTATATCATATACTCTTTTTCTACCCAAGCA 1912
Query 1227 --------CACCT--------------------------CTG-AGCTTTACCCTACAG--TCATC--------A 1255
||||| ||| .|||||.|||.|||| .|||| |
Sbjct 1913 GTGGCTGCCACCTGTATGGTTGGGGGCCATGTTAACCAACTGCTGCTTTCCCCCACAGAACCATCACAGCACTA 1986
Query 1256 GG--------------------AATGTTG-GGCTTGG---------------------------------AACT 1275
|| ||||||| ||||||| |||.
Sbjct 1987 GGAATATCACAGATGCATAATAAATGTTGAGGCTTGGAGGCATGGAGATTAAGAAAACCGTTGAAAGCCAAACC 2060
Query 1276 TG------------------------TTCCATGTTCTCCC----------------------GAGTTGGT---G 1300
|| ||..|.|||||.|| .|||..|| |
Sbjct 2061 TGACAACACAACATAGGAGCTGCTAATTTGAGGTTCTACCCATTCAAAAGCAAATACTTACAAAGTATGTTCAG 2134
Query 1301 GGA-TTATTGCTCCCT-----------------------------------TCATCCCCTCACT-----GAA-- 1331
|.| |||..|||||.| |||.||.||..|| |||
Sbjct 2135 GTACTTAGGGCTCCATAAAACTTTACATTTGTGTATCACATAGACAGTCAGTCAACCTCTGCCTTGGAGGAACC 2208
Query 1332 ----ATATG-TGCA-ATGGTCTTTACCATT--------------CATTGT-------CTTCGGAGCCACGGGTC 1378
|..|| |||| || |.||.||.||| || ||| ||||.| ||.||
Sbjct 2209 ACCTACTTGTTGCAGAT--TATTCACTATTTTTATTTTTTCCCCCA-TGTATATTAACTTCTG------GGTTC 2273
Query 1379 TGACCTCC----------------------------------GGCC-----------TCCTGAGTT--TGTTAT 1405
||.|||.| |||| .||| ||| |.||||
Sbjct 2274 TGGCCTTCAATGGATAAACAAACAAACAAACCCTAGACTTAGGGCCAGGGAAACTGTCCCT--GTTCATTTTAT 2345
Query 1406 T-------------------------------GCCGGAGACCCTTA------------------ACAGTC---- 1426
| |.|.||||...||| ||||||
Sbjct 2346 TTCTTACACAGCCAAATAAACTTCTTCCCTGAGGCTGAGAATGTTAAAACATGTGATAATAGAGACAGTCACTC 2419
Query 1427 ----------------------CGCTGCTAGAAACATTCTCCGACCTTC-------AGGTGT-ATTC--GTATC 1468
.|.|||||.||| |||||...|.|||| |..||| |||| |.|
Sbjct 2420 CACATATTGCCGTTCTTTTTGAAGATGCTATAAA-ATTCTAAAATCTTCTCTGTGGATCTGTCATTCAAGAA-- 2490
Query 1469 GCAGGCT------GGGA--GAAGAAGCATTAT-----------------------CTTTACAGGCTTTGGACCC 1511
||.|| |||| .|| ||||| |||||.....||| ||
Sbjct 2491 --AGCCTTAACTGGGGATTCAA-----ATTATACCTCTGTGTTAAACATCTGTTCCTTTAGTTATTTT----CC 2553
Query 1512 CCAACAGTG----TGTGGACAAGGA---GA-GCTCT-----------------TTAGG-----------GAGTG 1549
.|||.|||| |.|..|.||..| || ||||| |||.| ||.|.
Sbjct 2554 ACAATAGTGCCTTTTTAAATAATTATTTGATGCTCTAAATATACTGTTAAATATTATGCAAGCATTTTAGATTT 2627
Query 1550 AGAGTGAGG------AAGAGG-----AAGAATTTT----------ATGATG-----CAGATGAAGAGACTCAGA 1597
.|..||.|| |||||| ||..||||| ||.||| || ||||..| |||| .|
Sbjct 2628 TGTTTGGGGGACATAAAGAGGATTGAAATGATTTTAATAGCTGTAATTATGGATCCCA-ATGACCA-ACTC-TA 2698
Query 1598 TGATCAAG------------------------------------------------------------------ 1605
|||..|||
Sbjct 2699 TGACGAAGGCAACTTGCAGAGCAGAGGCCCAGCCCTGGGGACAATGGGCCTTCCATGCTTCATGCTCTCCCCGT 2772
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 2773 TCTCTCTCACCACCAGCTGGGAACTAAATTCCACTATTGTCCTGAACTGGCTTGTCTATTCTTGCCCTGACTTG 2846
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 2847 ATACTGTCACAGCTTGATTTAAATAGGGGTGTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGT 2920
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 2921 GTGTGTGGCTGGAATTTCTATTGTAAATGCAGAACAGACACAGAAAACCAACTGGGAAACAGCATTATGTAAAT 2994
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 2995 GCTGTTTCTGCAGGTGTAAGGGATTTTAAAAACGTTTTAGAAAACTGCATGGATTTAAATTTATTTTGCCTTCT 3068
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 3069 GCTTTCATGCAAGATACCTGGGAGACAGTGAGAACAGACAATGCAGTGTCACCTTGCATCCTTACATGTGATGT 3142
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 3143 CCTGGCTACAATCCTGCCCGTTGTCCTTGGTTTGTGTGCAGCTTGGTGTATTATGGCCTAACTCTGAGTGCGGG 3216
Query 1606 ------------------------------------------- 1605
Sbjct 3217 TGATCTAGGTGGAAGTATTTATGCCAACCTGGCCCTGTCTGGC 3259
