Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12211
- Subject:
- XR_002957031.1
- Aligned Length:
- 2423
- Identities:
- 1364
- Gaps:
- 929
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGTGCCGGGCGCCCAGGGGTTGCCGCGCTGGGCGGGAGGGCAGCGCCTGAGAGGGCGGTGGGGTGGCGGGGTT 74
Query 1 -----------------------------------------------------ATGGGCATCTACCAGATGTAC 21
|||||||||||||||||||||
Sbjct 75 CCTGCGCGCGGCCCGCCATGGAGGTGGAGGAGGCGTTCCAGGCGGTGGGGGAGATGGGCATCTACCAGATGTAC 148
Query 22 TTGTGCTTCCTGCTGGCCGTGCTGCTGCAGCTCTACGTGGCCACGGAGGCCATCCTCATTGCACTGGTTGGGGC 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TTGTGCTTCCTGCTGGCCGTGCTGCTGCAGCTCTACGTGGCCACGGAGGCCATCCTCATTGCACTGGTTGGGGC 222
Query 96 CACGCCATCCTACCACTGGGACCTGGCAGAGCTCCTGCCAAATCAGAGCCACGGTAACCAGTCAGCTGGTGAAG 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CACGCCATCCTACCACTGGGACCTGGCAGAGCTCCTGCCAAATCAGAGCCACGGTAACCAGTCAGCTGGTGAAG 296
Query 170 ACCAGGCCTTTGGGGACTGGCTCCTGACAGCCAACGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAGCAGC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCAGGCCTTTGGGGACTGGCTCCTGACAGCCAACGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAGCAGC 370
Query 244 TTCACCTCCATCGCCTCGGAGTGGTTTTTAATTGCCAACAGATCCTACAAAGTCAGTGCAGCAAGCTCTTTTTT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTCACCTCCATCGCCTCGGAGTGGTTTTTAATTGCCAACAGATCCTACAAAGTCAGTGCAGCAAGCTCTTTTTT 444
Query 318 CTTCAGTGGTGTATTTGTTGGAGTTATCTCTTTTGGTCAGCTTTCAGATCGCTTCGGAAGGAAAAAAGTCTATC 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTTCAGTGGTGTATTTGTTGGAGTTATCTCTTTTGGTCAGCTTTCAGATCGCTTCGGAAGGAAAAAAGTCTATC 518
Query 392 TCACAGGTTTTGCTCTTGACATCTTATTTGCAATTGCAAATGGATTTTCCCCCTCATATGAGTTCTTTGCAGTA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCACAGGTTTTGCTCTTGACATCTTATTTGCAATTGCAAATGGATTTTCCCCCTCATATGAGTTCTTTGCAGTA 592
Query 466 ACTCGCTTCCTGGTGGGCATGATGAATGGAGGGATGTCGCTGGTGGCCTTTGTCTTGCTTAATGAGTGTGTGGG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 593 ACTCGCTTCCTGGTGGGCATGATGAATGGAGGGATGTCGCTGGTGGCCTTTGTCTTGCTTAATGAATGTGTGGG 666
Query 540 CACCGCCTACTGGGCACTTGCAGGATCGATTGGCGGCCTCTTCTTTGCAGTTGGCATTGCCCAATATGCCCTGT 613
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 667 CACCGCCTACTGGGCACTTGCAGGATCGATTGGCGGCCTGTTCTTTGCAGTTGGCATTGCCCAATATGCCCTGT 740
Query 614 TAGGATACTTCATCCGCTCCTGGAGGACCCTAGCCATTCTGGTTAACCTGCAGGGAACGGTGGTCTTTCTCTTA 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TAGGATACTTCATCCGCTCCTGGAGGACCCTAGCCATTCTGGTTAACCTGCAGGGAACGGTGGTCTTTCTCTTA 814
Query 688 TCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGACTGAGTGAGGCTGAAGAGGCGCTGTA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGACTGAGTGAGGCTGAAGAGGCGCTGTA 888
Query 762 CCTCATTGCCAAGAGGAACCGCAAACTCAAGTGCACGTTCTCACTAACACACCCAGCCAACAGGAGCTGCAGGG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCTCATTGCCAAGAGGAACCGCAAACTCAAGTGCACGTTCTCACTAACACACCCAGCCAACAGGAGCTGCAGGG 962
Query 836 AGACTGGAAGTTTCCTGGATCTCTTTCGTTACCGGGTCCTGTTAGGACACACTTTGATCCTGATGTTCAT---- 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGACTGGAAGTTTCCTGGATCTCTTTCGTTACCGGGTCCTGTTAGGACACACTTTGATCCTGATGTTCATCTGC 1036
Query 906 ---------------------CTGGTTT-----GTGTGCAGCTTGGTGTATT------------ATG-----GC 936
||||||| .||.|||||...||.| || ||| ||
Sbjct 1037 AAGTCTCCTGATCCTTAGCGCCTGGTTTTCTGCTTGCGCAGCCCCGTCT-TTCTCAAGTAGCAGATGATAGTGC 1109
Query 937 CTAA----------CTCTGAGTGCGGGT------------------GATCT---------AGGT-------GGA 966
||.| |.|||||...|.|| .|||| |||| ..|
Sbjct 1110 CTGATGGGCAGGTCCACTGAGCTTGAGTAAGTAGACATCAGAAGCACATCTTTGCTTTTGAGGTATTTATCATA 1183
Query 967 AGTATTTATGCCAACCTGGCCCTGT---CTG------------------------GCCTCATAGAGA------- 1006
|.||||||.|||..||||.|||| | ||| ||.|..||||.|
Sbjct 1184 AATATTTAAGCCTTCCTGCCCCT-TCCCCTGCAAAAAAGGAAAGAAAGCAAATAAGCATGGTAGAAATAGATGA 1256
Query 1007 ----TTCAAT---------------CTTACC------------------------------------------- 1018
||.||| ||||||
Sbjct 1257 GTTTTTAAATAGGACTTTAAAAATACTTACCTTTGGCACTGGCATCAAGCAGTTTGCTAGCACATTCTGATTGC 1330
Query 1019 ----CTC------------TCTGTATCTACT-----TGATTAA--------------CCAAAAATG-------- 1049
||| |||||..| ||| |.|.||| |.|||.|||
Sbjct 1331 GGTGCTCCATGCTGCATTTTCTGTGGC-ACTCCCACTCACTAACTCACTGAGGTGGGCTAAATATGATCCCTTG 1403
Query 1050 -------------------GTTTG--GT-------CGGAAGC---------------------GAACATTATCA 1074
||||| || |..|||| |||| |.||.|
Sbjct 1404 TACAGATGGGACCCCAGGAGTTTGAAGTGATGAACCCTAAGCCACATATGTAAATCAGTGATTGAAC-TGATGA 1476
Query 1075 GCA-TTTCTGTGCCTAGGAGGA-----CTGGCTTGT----CTTAT----------------------------- 1109
||| ||||||..||| || |||| |||| |||||
Sbjct 1477 GCACTTTCTGAACCT-----GATTTTTCTGG-TTGTTTAGCTTATTCCCACCTACCTTTCAAAATGCTCTCAGC 1544
Query 1110 -----TGTAATGTTTC---------TTCCAGA-----------AAAGAA---------AGACACAGGTG----- 1144
||||| |||.| |||.||| |||||| |||.|.|||.|
Sbjct 1545 GTGAGTGTAA-GTTGCATTCAGCGGTTCAAGATGGTTTCATTTAAAGAATGAAGTTGTAGAAAGAGGAGAAATG 1617
Query 1145 --TGTTTGCA--------GTGG--TGAACA--------GCCATTCCTTGTCCTTGCTGGGGAAGCTGA----CC 1194
||..|||| |||| ||.||| |..| ||||.|.|.|| |||.| ||
Sbjct 1618 GATGGGTGCATACAATTTGTGGATTGCACATGTGTTTTGATA----TTGTACATACT------GCTAATGTGCC 1681
Query 1195 ATCAGTGCT------------------------GCCTTTA--ACA-TTGT--------TTATATCTA-----CA 1228
||.||||.| ||||..| ||| |||| ||||||.|| ||
Sbjct 1682 ATAAGTGTTATCTGGGCAAAATCATACCTACTAGCCTAAAGGACAGTTGTGCTGTGGCTTATATGTATTTGCCA 1755
Query 1229 -----CCT---CTGAGCTTTACCCTACA-GTCAT-CAGG----AATGTTGGGCTTGGAACTTGTTCCATGTTCT 1288
||| ..||| ||||||| .|||| |||| || ||||..|| ||.||
Sbjct 1756 TGAAGCCTGCATGGAG-----CCCTACATTTCATGCAGGGATAAA----------GGAAAGTG----ATTTT-- 1808
Query 1289 CCCGAGTTG---GTGGGATTAT------TGCTCC------------CTTCATCCCCTCACTGAAATATG----T 1337
|..|| |||...|||| .|||.| ||| |..||||.| |
Sbjct 1809 ----ATATGAAAGTGATCTTATGTATAAAGCTACAAAGAATAGTAGCTT-----------TAGAATAAGAAGCT 1867
Query 1338 GCAA------TGGTCTTTACCAT----TCATTGTCTTCGGAGCCACG----GGTCTGACCTCCGGCCTCCTGAG 1397
|||| |..|||.||.||| ||.||.||| |.|||.| || |.|||.||||
Sbjct 1868 GCAAAGATATTTTTCTATATCATATACTCTTTTTCT----ACCCAAGCAGTGG---------CTGCCACCTG-- 1926
Query 1398 TTTGTTATTGCCGGAGACC--CTTAACAGTCCGCTGCT---------AGAAACATTCTCCGACCT--------- 1451
|||.|..||.|.|| .|||||...|.|||||| ||||.|| ||.|.|..||
Sbjct 1927 -----TATGGTTGGGGGCCATGTTAACCAACTGCTGCTTTCCCCCACAGAACCA-TCACAGCACTAGGAATATC 1994
Query 1452 TCAGGTGTAT--------TCGTATCGCAGGCTGGGAG--AAGAAGCATTATCTTTACAG----GCTTTGGACCC 1511
.|||.||.|| |.| |||||.|||| |.|.|| |||| || .|.|||.|..|
Sbjct 1995 ACAGATGCATAATAAATGTTG------AGGCTTGGAGGCATGGAG-ATTA-------AGAAAACCGTTGAAAGC 2054
Query 1512 CCAACAGTGTGTGGACA---------AGGAG-AGCTCTTTAGGGAGTGAGAGTGAGG------------AAGAG 1563
|.||| ..|||| ||||| .|||..|| ||||| ||.||
Sbjct 2055 CAAAC------CTGACAACACAACATAGGAGCTGCTAATT------------TGAGGTTCTACCCATTCAAAAG 2110
Query 1564 GAAGAATTT------TATGATGCAGAT-----GAAGAGACT-----CAGATGATCAAG---------------- 1605
.||..|.|| |||| |.||||| |.|||.|.| ||||..||..||
Sbjct 2111 CAAATACTTACAAAGTATG-TTCAGATACCTGGGAGACAGTGAGAACAGACAATGCAGTGTCACCTTGCATCCT 2183
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 2184 TACATGTGATGTCCTGGCTACAATCCTGCCCGTTGTCCTTGGTTTGTGTGCAGCTTGGTGTATTATGGCCTAAC 2257
Query 1606 ------------------------------------------------------- 1605
Sbjct 2258 TCTGAGTGCGGGTGATCTAGGTGGAAGTATTTATGCCAACCTGGCCCTGTCTGGC 2312
