Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12232
- Subject:
- XR_002957460.1
- Aligned Length:
- 3581
- Identities:
- 660
- Gaps:
- 2921
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGCGCGCTCCGCTCGGCAGCCTGTGGGACGCGACCGCGGCGCTAGTCTCGTTCCTTTGTGCTGCGGCGGCGGC 74
Query 1 ---------------------------------------------------------------ATGTCGGCGGC 11
|||||||||||
Sbjct 75 TTCTCGAGTCCTCCCCGACGCGTCCTCTAGGCCAGCGAGCCCCGCGCTCTCCGGTGACGGACCATGTCGGCGGC 148
Query 12 GGGAGCGGGCGCGGGCGTAGAGGCGGGCTTCTCCAGCGAGGAGCTGCTCTCGCTCCGTTTCCCGCTGCACCGCG 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGGAGCGGGCGCGGGCGTAGAGGCGGGCTTCTCCAGCGAGGAGCTGCTCTCGCTCCGTTTCCCGCTGCACCGCG 222
Query 86 CCTGCCGCGACGGGGACCTGGCCACGCTCTGCTCGCTGCTGCAGCAGACACCCCACGCCCACCTGGCCTCTGAG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTGCCGCGACGGGGACCTGGCCACGCTCTGCTCGCTGCTGCAGCAGACACCCCACGCCCACCTGGCCTCTGAG 296
Query 160 GACTCCTTCTATGGCTGGACGCCCGTGCACTGGGCCGCGCATTTCGGCAAGTTGGAGTGCTTAGTGCAGTTGGT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACTCCTTCTATGGCTGGACGCCCGTGCACTGGGCCGCGCATTTCGGCAAGTTGGAGTGCTTAGTGCAGTTGGT 370
Query 234 GAGAGCGGGAGCCACACTCAACGTCTCCACCACACGGTACGCGCAGACGCCAGCCCACATTGCAGCCTTTGGGG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAGAGCGGGAGCCACACTCAACGTCTCCACCACACGGTACGCGCAGACGCCAGCCCACATTGCAGCCTTTGGGG 444
Query 308 GACATCCTCAGTGCCTGGTCTGGCTGATTCAAGCAGGAGCCAACATTAACAAACCGGATTGTGAGGGTGAAACT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GACATCCTCAGTGCCTGGTCTGGCTGATTCAAGCAGGAGCCAACATTAACAAACCGGATTGTGAGGGTGAAACT 518
Query 382 CCCATTCACAAGGCAGCTCGCTCTGGGAGCCTAGAATGCATCAGTGCCCTTGTGGCGAATGGGGCTCACGTCGA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCCATTCACAAGGCAGCTCGCTCTGGGAGCCTAGAATGCATCAGTGCCCTTGTGGCGAATGGGGCTCACGTCGA 592
Query 456 GTTTATTTCACAGAGCAGTGTACATTCTTGTCTTCCAGGGGAACTTCAACATGGAGTTACTTTTGATCCCTCAG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTTTATTTCACAGAGCAGTGTACATTCTTGTCTTCCAGGGGAACTTCAACATGGAGTTACTTTTGATCCCTCAG 666
Query 530 TTTTAATTCAGTGTCTAA-------------------------------------------------------- 547
||||||||||||||||||
Sbjct 667 TTTTAATTCAGTGTCTAAAGGTTTACAAGTTCAACTTACTCTATTTTATTCAGCTCTTTCACTTACTCTGCCAT 740
Query 548 -------------------------------------------------------------------------- 547
Sbjct 741 CACTTCCTACTTGAATCTGAGTTTTAGCTACTGTAGAGGTCTCAGACCTTTCCTTTTTAGTACTATTAGCCAGG 814
Query 548 -------------------------------------------------------------------------- 547
Sbjct 815 TAAAACTTTGGTTCTTGTGAGTGGTAGGGATGAGTTTTTAGGACAGTATTCAAAGCCTTTTTAAAGGAACCAAC 888
Query 548 -------------------------------------------------------------------------- 547
Sbjct 889 TACTCAAATGCTCTACAATGCCAAAAATACAATACTCCTGCAGGTTTTCCCAAGCAAGGCCAAAACAATCAAAA 962
Query 548 -------------------------------------------------------------------------- 547
Sbjct 963 TCTGACAGAAAAACACAGCTGTTCAGCTCTGGAATCTGATGATAGGCTACTTTTTAATGTCAGGACATCCTTCT 1036
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1037 AAACTTCCACTTACAGTGTCACATGTAAGCATGAAGGCTGGCTCGTTGGTGAGCCATTGCTTTGTTTTTAGGAA 1110
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1111 GACAGTTATGAATGCCATGGACAATCTCAGTACATGTTGTTTGTTATGATTTTATTCACGCTAAAGGAATGGGT 1184
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1185 ATTAAAATTAAGTGCATATAATATAGAATTCAGTTTCAAGTCTGAAGTTAGCGTAAATTTAGATTCTTCAGACT 1258
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1259 AACATAAAACATGATTTTGAGAAGTTAAATAGGAAGATGCCTTTTTTAGAAGTTTAGCATATTTAGTTTATCTC 1332
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1333 CCAAATCTTGCTTAGAAATCAAATGTATATAAGAGAAGTTAGTTACAGAGCTAGATTGATTAACTACTTCTTTA 1406
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1407 ATGAAGATTTGCTATGAATTTGTTTACTCTTTCATACCACCTTCAGATAGCTAGTCAGTTCAGCAGGAGCAGAG 1480
Query 548 -------------------------------------------------AGCCTGAGAAATGCCAGTGGCCTGA 572
|||||||||||||||||||||||||
Sbjct 1481 ACCAGGTTAGCACGCGGATGGGGTGTAATTCAGTGTTTTTGTGTTGTACAGCCTGAGAAATGCCAGTGGCCTGA 1554
Query 573 CAGCAGCAGACATTGCACAAACCCAGGGTTTCCAAGAGTGTGCCCAGTTTCTCTTGAACCTCCAGAATTGTCAT 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAGCAGCAGACATTGCACAAACCCAGGGTTTCCAAGAGTGTGCCCAGTTTCTCTTGAACCTCCAGAATTGTCAT 1628
Query 647 CTGAACCATTTCTA------------------------------------------------------------ 660
||||||||||||||
Sbjct 1629 CTGAACCATTTCTATAACAATGGCATCTTAAATGGGGGTCATCAGAATGTATTTCCTAATCATATTAGTGTGGG 1702
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1703 AACAAATCGAAAGAGATGCTTGGAAGACTCAGAAGACTTTGGAGTAAAGAAAGCTAGAACTGAAGCTCAAAGCT 1776
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1777 TGGATTCTGCCGTGCCACTCACGAATGGCGACACAGAAGACGATGCTGACAAAATGCACGTTGATAGGGAGTTT 1850
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1851 GCTGTTGTAACAGGTGGGAGTGGACAGTTTCCTGTTAGCTGCAACAACAATCCAATGGTTGAAGACACCAAACA 1924
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1925 GCAGGAGAGTGGTTCTGTTGGACCAAAAGAAATAGAAATATATACTGTGTCAGCAATGCAGACCCCCTGTCGTT 1998
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1999 GCAGGAATCAATATGAAAAACAGTAGCTCCGTATCGAATACATTGACAAATGGATGTGTCATCAATGGACATTT 2072
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2073 GGACTTCCCCTCCACGACCCCGCTCAGTGGGATGGAAAGCAGGAATGGCCAGTGCTTGACAGGAACTAACGGAA 2146
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2147 TTAGCAGTGGATTAGCCCCAGGACAGCCGTTTCCGAGTAGCCAGGGTTCTCTCTGCATTAGTGGGACTGAGGAG 2220
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2221 CCAGAGAAGACCCTGAGAGCTAACCCTGAGTTGTGCGGTTCTCTGCACCTGAACGGGAGTCCAAGTAGCTGCAT 2294
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2295 AGCCAGTAGGCCTTCCTGGGTGGAAGACATTGGGGATAACCTGTACTATGGACACTACCACGGGTTTGGGGACA 2368
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2369 CTGCTGAAAGCATCCCAGAACTGAACAGTGTGGTCGAGCATTCCAAGTCCGTGAAGGTGCAGGAGCGGTACGAC 2442
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2443 AGTGCCGTGCTGGGCACCATGCACCTGCACCACGGCTCCTAGAGACGCTGACCTGGCTCTCGGAAACGCAGGAG 2516
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2517 TCCTTCCTGGTAGCCAGCTCAGAATACCCATGTAGCAGCAACTTGAACGAATGTCACAACTTGTACGTTTTTTA 2590
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2591 TATACTTCAACTTTCTGAAAAAGTAAACTTCGACAAGTTCCCAGCAACTGCTTGTTTGTGCATGAGTAGGGCTT 2664
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2665 ACTAAGTGCATAGATGTTTCTACAGTGAGGTGTCCTTTTTATAAGGTGCACTTTTGGAGTTTTTCTGATGCCAA 2738
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2739 TCTCAACATTGTCTTTTTAATACTGTCACCAGATATTGCCATTTTTCTTTTTGTTAAAAGATTATATGATCAAG 2812
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2813 ATAAATTGGGGTGGTAAATCAGGTGCCTGGTAATTTATCTCTTTGCACATGGGCATCATTTTAAAAAGCTTGCT 2886
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2887 TCCACTCTTTTCTGTAGAATTTGACGGAACACAGCTATTTCCCTATGCAAGGTACAGCCTTACAAAGATTTCTG 2960
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2961 CAGTGATTTGTGTGAAGAAGAGAACGTTTGTCTTTTTCAATGAAGCTTTGCAGATCACCATGTGGTTGAAGGTT 3034
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3035 TTAGTTGTGGACACAGTGGTCCCTCCTTAATGATGAAGATCACTGCCTTGGGCTTCATGGAAAACAGGCCCAGC 3108
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3109 CTGGGGCTGCGTTTGGATTTATTGTTTTTATTCCACACTTCCTACTTGGTCTCTGGAAGTTTTACCACATGTAA 3182
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3183 CAGATTCCTTTATATGTAGTGGAAATCACTATTTGTAGAAACTGTCAGGTCAAAATATTTAACTGACTGTTGAC 3256
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3257 ATGTATTTTCTTTTTTCCTTGTTTTTGTTTTTTGGGGTTTTCTGCTTTAAGATATATACCACTATGTATATCCA 3330
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3331 GTTAACTGAGAGAATTTTGACTCTCTTAATAAAACTGCATTAAGTTTTTGATTTTGTAGAAATTAGCTTTTGTC 3404
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3405 TAGGCAACTAGTGGTTATACTCTGCAAATATTGTAATGAATTTTTACTTTTTTGATTTTTGTAATAAAAATTGG 3478
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3479 TGCAGATAAAATGTCAAATGAACAAACCAGTGTTCTAAGAGTGTTACTAACATTTTGTTCTAAAACTGTCCTTC 3552
Query 661 ----------------------------- 660
Sbjct 3553 ACAAATTGAATAAAAAACTCTCACACTCA 3581
