Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12232
- Subject:
- XR_002957465.1
- Aligned Length:
- 4214
- Identities:
- 660
- Gaps:
- 3554
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGCGCGCTCCGCTCGGCAGCCTGTGGGACGCGACCGCGGCGCTAGTCTCGTTCCTTTGTGCTGCGGCGGCGGC 74
Query 1 ---------------------------------------------------------------ATGTCGGCGGC 11
|||||||||||
Sbjct 75 TTCTCGAGTCCTCCCCGACGCGTCCTCTAGGCCAGCGAGCCCCGCGCTCTCCGGTGACGGACCATGTCGGCGGC 148
Query 12 GGGAGCGGGCGCGGGCGTAGAGGCGGGCTTCTCCAGCGAGGAGCTGCTCTCGCTCCGTTTCCCGCTGCACCGCG 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGGAGCGGGCGCGGGCGTAGAGGCGGGCTTCTCCAGCGAGGAGCTGCTCTCGCTCCGTTTCCCGCTGCACCGCG 222
Query 86 CCTGCCGCGACGGGGACCTGGCCACGCTCTGCTCGCTGCTGCAGCAGACACCCCACGCCCACCTGGCCTCTGAG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTGCCGCGACGGGGACCTGGCCACGCTCTGCTCGCTGCTGCAGCAGACACCCCACGCCCACCTGGCCTCTGAG 296
Query 160 GACTCCTTCTATGGCTGGACGCCCGTGCACTGGGCCGCGCATTTCGGCAAGTTGGAGTGCTTAGTGCAGTTGGT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACTCCTTCTATGGCTGGACGCCCGTGCACTGGGCCGCGCATTTCGGCAAGTTGGAGTGCTTAGTGCAGTTGGT 370
Query 234 GAGAGCGGGAGCCACACTCAACGTCTCCACCACACGGTACGCGCAGACGCCAGCCCACATTGCAGCCTTTGGGG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAGAGCGGGAGCCACACTCAACGTCTCCACCACACGGTACGCGCAGACGCCAGCCCACATTGCAGCCTTTGGGG 444
Query 308 GACATCCTCAGTGCCTGGTCTGGCTGATTCAAGCAGGAGCCAACATTAACAAACCGGATTGTGAGGGTGAAACT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GACATCCTCAGTGCCTGGTCTGGCTGATTCAAGCAGGAGCCAACATTAACAAACCGGATTGTGAGGGTGAAACT 518
Query 382 CCCATTCACAAGGCAGCTCGCTCTGGGAGCCTAGAATGCATCAGTGCCCTTGTGGCGAATGGGGCTCACGTCGA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCCATTCACAAGGCAGCTCGCTCTGGGAGCCTAGAATGCATCAGTGCCCTTGTGGCGAATGGGGCTCACGTCGA 592
Query 456 -------------------------------------------------------------------------- 455
Sbjct 593 TAACCCCAAGAAAGGCATCAGGGTTCTGGAGTGGTTGTTTGAGTGACACAGCACAAGGCCTTGATTTCATCATG 666
Query 456 -------------------------------------------------------------------------- 455
Sbjct 667 CTTTTGCTGTGGATGTAGTGTAGCTTGCTGAACAGGTATGGAAGCTGTCTTTGCTGTTAAGTACTTCTCCCGTT 740
Query 456 -------------------------------------------GTTTATTTCACAGAGCAGTGTACATTCTTGT 486
|||||||||||||||||||||||||||||||
Sbjct 741 TGTTTATCAACCTGCAGCTAACAGGATGTCTGCTTTTTTACAGGTTTATTTCACAGAGCAGTGTACATTCTTGT 814
Query 487 CTTCCAGGGGAACTTCAACATGGAGTTACTTTTGATCCCTCAGTTTTAATTCAGTGTCTAA------------- 547
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTTCCAGGGGAACTTCAACATGGAGTTACTTTTGATCCCTCAGTTTTAATTCAGTGTCTAAAGGTTTACAAGTT 888
Query 548 -------------------------------------------------------------------------- 547
Sbjct 889 CAACTTACTCTATTTTATTCAGCTCTTTCACTTACTCTGCCATCACTTCCTACTTGAATCTGAGTTTTAGCTAC 962
Query 548 -------------------------------------------------------------------------- 547
Sbjct 963 TGTAGAGGTCTCAGACCTTTCCTTTTTAGTACTATTAGCCAGGTAAAACTTTGGTTCTTGTGAGTGGTAGGGAT 1036
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1037 GAGTTTTTAGGACAGTATTCAAAGCCTTTTTAAAGGAACCAACTACTCAAATGCTCTACAATGCCAAAAATACA 1110
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1111 ATACTCCTGCAGGTTTTCCCAAGCAAGGCCAAAACAATCAAAATCTGACAGAAAAACACAGCTGTTCAGCTCTG 1184
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1185 GAATCTGATGATAGGCTACTTTTTAATGTCAGGACATCCTTCTAAACTTCCACTTACAGTGTCACATGTAAGCA 1258
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1259 TGAAGGCTGGCTCGTTGGTGAGCCATTGCTTTGTTTTTAGGAAGACAGTTATGAATGCCATGGACAATCTCAGT 1332
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1333 ACATGTTGTTTGTTATGATTTTATTCACGCTAAAGGAATGGGTATTAAAATTAAGTGCATATAATATAGAATTC 1406
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1407 AGTTTCAAGTCTGAAGTTAGCGTAAATTTAGATTCTTCAGACTAACATAAAACATGATTTTGAGAAGTTAAATA 1480
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1481 GGAAGATGCCTTTTTTAGAAGTTTAGCATATTTAGTTTATCTCCCAAATCTTGCTTAGAAATCAAATGTATATA 1554
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1555 AGAGAAGTTAGTTACAGAGCTAGATTGATTAACTACTTCTTTAATGAAGATTTGCTATGAATTTGTTTACTCTT 1628
Query 548 -------------------------------------------------------------------------- 547
Sbjct 1629 TCATACCACCTTCAGATAGCTAGTCAGTTCAGCAGGAGCAGAGACCAGGTTAGCACGCGGATGGGGTGTAATTC 1702
Query 548 ------------------AGCCTGAGAAATGCCAGTGGCCTGACAGCAGCAGACATTGCACAAACCCAGGGTTT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AGTGTTTTTGTGTTGTACAGCCTGAGAAATGCCAGTGGCCTGACAGCAGCAGACATTGCACAAACCCAGGGTTT 1776
Query 604 CCAAGAGTGTGCCCAGTTTCTCTTGAACCTCCAGAATTGTCATCTGAACCATTTCTA----------------- 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CCAAGAGTGTGCCCAGTTTCTCTTGAACCTCCAGAATTGTCATCTGAACCATTTCTATAACAATGGCATCTTAA 1850
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1851 ATGGGGGTCATCAGAATGTATTTCCTAATCATATTAGTGTGGGAACAAATCGAAAGAGATGCTTGGAAGACTCA 1924
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1925 GAAGACTTTGGAGTAAAGAAAGCTAGAACTGAAGCTCAAAGCTTGGATTCTGCCGTGCCACTCACGAATGGCGA 1998
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1999 CACAGAAGACGATGCTGACAAAATGCACGTTGATAGGGAGTTTGCTGTTGTAACAGGTGGGAGTGGACAGTTTC 2072
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2073 CTGTTAGCTGCAACAACAATCCAATGGTTGAAGACACCAAACAGCAGGAGAGTGGTTCTGTTGGACCAAAAGAA 2146
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2147 ATAGAAATATATACTGTGTCAGCAATGCAGACCCCCTGTCGTTGCAGGAATCAGTATGCATATTATTTCTAACA 2220
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2221 TAAGTTTTTCTCAGATGTTTTGCACTTTGTTGTCCAGTGTCTTTTTAAAAATGTTATACTATAATTTGCATATC 2294
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2295 TTGGGCAAGTTTGTAGATACAAGAAGTGTTTTGGGTATATTCTGTGGACATGAAAAATGTAAGTGCAATCTTTA 2368
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2369 TTCTGATTTGAAGCTATTGCTTAATGTGCCTTGCTTATTTTTAATGAGGTTTGCATTTTTAATTTTCTGACATA 2442
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2443 TGGCCTTTGGGTGAATATACCGAACATGCTACAGTTAATATTTTCAAACCAATATACCACAAAGAGGACGACTA 2516
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2517 GCAGTAAACACTGAGAAACTAGTAAATGTGGTTCTGACTCAGCCCAGTCACTCCAGCATGGAATCTTTTACCCA 2590
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2591 GGACTTGGTTGCTCTGGTTTCTGTGGTCTTCATTCTGAGTCTGTTAAAATGATATGAAAAACAGTAGCTCCGTA 2664
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2665 TCGAATACATTGACAAATGGATGTGTCATCAATGGACATTTGGACTTCCCCTCCACGACCCCGCTCAGTGGGAT 2738
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2739 GGAAAGCAGGAATGGCCAGTGCTTGACAGGAACTAACGGAATTAGCAGTGGATTAGCCCCAGGACAGCCGTTTC 2812
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2813 CGAGTAGCCAGGGTTCTCTCTGCATTAGTGGGACTGAGGAGCCAGAGAAGACCCTGAGAGCTAACCCTGAGTTG 2886
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2887 TGCGGTTCTCTGCACCTGAACGGGAGTCCAAGTAGCTGCATAGCCAGTAGGCCTTCCTGGGTGGAAGACATTGG 2960
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2961 GGATAACCTGTACTATGGACACTACCACGGGTTTGGGGACACTGCTGAAAGCATCCCAGAACTGAACAGTGTGG 3034
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3035 TCGAGCATTCCAAGTCCGTGAAGGTGCAGGAGCGGTACGACAGTGCCGTGCTGGGCACCATGCACCTGCACCAC 3108
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3109 GGCTCCTAGAGACGCTGACCTGGCTCTCGGAAACGCAGGAGTCCTTCCTGGTAGCCAGCTCAGAATACCCATGT 3182
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3183 AGCAGCAACTTGAACGAATGTCACAACTTGTACGTTTTTTATATACTTCAACTTTCTGAAAAAGTAAACTTCGA 3256
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3257 CAAGTTCCCAGCAACTGCTTGTTTGTGCATGAGTAGGGCTTACTAAGTGCATAGATGTTTCTACAGTGAGGTGT 3330
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3331 CCTTTTTATAAGGTGCACTTTTGGAGTTTTTCTGATGCCAATCTCAACATTGTCTTTTTAATACTGTCACCAGA 3404
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3405 TATTGCCATTTTTCTTTTTGTTAAAAGATTATATGATCAAGATAAATTGGGGTGGTAAATCAGGTGCCTGGTAA 3478
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3479 TTTATCTCTTTGCACATGGGCATCATTTTAAAAAGCTTGCTTCCACTCTTTTCTGTAGAATTTGACGGAACACA 3552
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3553 GCTATTTCCCTATGCAAGGTACAGCCTTACAAAGATTTCTGCAGTGATTTGTGTGAAGAAGAGAACGTTTGTCT 3626
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3627 TTTTCAATGAAGCTTTGCAGATCACCATGTGGTTGAAGGTTTTAGTTGTGGACACAGTGGTCCCTCCTTAATGA 3700
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3701 TGAAGATCACTGCCTTGGGCTTCATGGAAAACAGGCCCAGCCTGGGGCTGCGTTTGGATTTATTGTTTTTATTC 3774
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3775 CACACTTCCTACTTGGTCTCTGGAAGTTTTACCACATGTAACAGATTCCTTTATATGTAGTGGAAATCACTATT 3848
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3849 TGTAGAAACTGTCAGGTCAAAATATTTAACTGACTGTTGACATGTATTTTCTTTTTTCCTTGTTTTTGTTTTTT 3922
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3923 GGGGTTTTCTGCTTTAAGATATATACCACTATGTATATCCAGTTAACTGAGAGAATTTTGACTCTCTTAATAAA 3996
Query 661 -------------------------------------------------------------------------- 660
Sbjct 3997 ACTGCATTAAGTTTTTGATTTTGTAGAAATTAGCTTTTGTCTAGGCAACTAGTGGTTATACTCTGCAAATATTG 4070
Query 661 -------------------------------------------------------------------------- 660
Sbjct 4071 TAATGAATTTTTACTTTTTTGATTTTTGTAATAAAAATTGGTGCAGATAAAATGTCAAATGAACAAACCAGTGT 4144
Query 661 ---------------------------------------------------------------------- 660
Sbjct 4145 TCTAAGAGTGTTACTAACATTTTGTTCTAAAACTGTCCTTCACAAATTGAATAAAAAACTCTCACACTCA 4214
